Atomistry » Iron » PDB 6xz8-6yf4 » 6y0o
Atomistry »
  Iron »
    PDB 6xz8-6yf4 »
      6y0o »

Iron in PDB 6y0o: Isopenicillin N Synthase in Complex with Acv and Fe Under Anaerobic Environment Using Ft-Ssx Methods

Enzymatic activity of Isopenicillin N Synthase in Complex with Acv and Fe Under Anaerobic Environment Using Ft-Ssx Methods

All present enzymatic activity of Isopenicillin N Synthase in Complex with Acv and Fe Under Anaerobic Environment Using Ft-Ssx Methods:
1.21.3.1;

Protein crystallography data

The structure of Isopenicillin N Synthase in Complex with Acv and Fe Under Anaerobic Environment Using Ft-Ssx Methods, PDB code: 6y0o was solved by P.Rabe, J.H.Beale, P.A.Lang, A.S.Dirr, T.M.Leissing, A.Butryn, P.Aller, J.J.A.G.Kamps, D.Axford, M.A.Mcdonough, A.M.Orville, R.Owen, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.85 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.889, 75.797, 102.034, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 24.7

Iron Binding Sites:

The binding sites of Iron atom in the Isopenicillin N Synthase in Complex with Acv and Fe Under Anaerobic Environment Using Ft-Ssx Methods (pdb code 6y0o). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Isopenicillin N Synthase in Complex with Acv and Fe Under Anaerobic Environment Using Ft-Ssx Methods, PDB code: 6y0o:

Iron binding site 1 out of 1 in 6y0o

Go back to Iron Binding Sites List in 6y0o
Iron binding site 1 out of 1 in the Isopenicillin N Synthase in Complex with Acv and Fe Under Anaerobic Environment Using Ft-Ssx Methods


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Isopenicillin N Synthase in Complex with Acv and Fe Under Anaerobic Environment Using Ft-Ssx Methods within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe404

b:27.0
occ:1.00
 OD1 A:ASP216 1.9 36.2 1.0
O A:HOH578 2.0 19.5 1.0
NE2 A:HIS214 2.1 18.1 1.0
NE2 A:HIS270 2.2 29.1 1.0
S17 A:ACV403 2.5 24.4 1.0
HS7 A:ACV403 2.7 29.3 1.0
H332 A:ACV403 2.9 41.1 1.0
CG A:ASP216 3.0 36.3 1.0
CD2 A:HIS214 3.0 17.2 1.0
CE1 A:HIS270 3.1 23.5 1.0
CE1 A:HIS214 3.1 16.1 1.0
HD2 A:HIS214 3.2 20.7 1.0
CD2 A:HIS270 3.2 22.6 1.0
HE1 A:HIS270 3.2 28.2 1.0
HE1 A:HIS214 3.3 19.4 1.0
OD2 A:ASP216 3.3 38.4 1.0
H161 A:ACV403 3.3 33.3 1.0
HD2 A:HIS270 3.4 27.1 1.0
C16 A:ACV403 3.5 27.8 1.0
H331 A:ACV403 3.5 41.1 1.0
C33 A:ACV403 3.7 34.2 1.0
H162 A:ACV403 3.9 33.3 1.0
HA A:ASP216 4.0 24.4 1.0
O A:HOH599 4.1 25.8 1.0
H373 A:ACV403 4.1 42.2 1.0
ND1 A:HIS270 4.2 23.5 1.0
ND1 A:HIS214 4.2 17.6 1.0
CG A:HIS214 4.2 17.6 1.0
CG A:HIS270 4.3 21.9 1.0
CB A:ASP216 4.3 25.9 1.0
H333 A:ACV403 4.4 41.1 1.0
H371 A:ACV403 4.5 42.2 1.0
HE1 A:PHE285 4.5 21.3 1.0
CA A:ASP216 4.6 20.4 1.0
O A:HOH598 4.6 25.7 1.0
C37 A:ACV403 4.7 35.2 1.0
N A:ASP216 4.8 17.4 1.0
HB3 A:ASP216 4.8 31.1 1.0
HD21 A:ASN252 4.8 18.1 1.0
C32 A:ACV403 4.8 33.0 1.0
HG21 A:THR221 4.8 23.1 1.0
HNT A:ACV403 4.9 29.0 1.0
HB2 A:ASP216 4.9 31.1 1.0
H A:ASP216 4.9 20.9 1.0
HG1 A:THR221 4.9 25.1 1.0
C12 A:ACV403 4.9 27.1 1.0
HD1 A:HIS270 4.9 28.2 1.0
HD1 A:HIS214 4.9 21.1 1.0
N29 A:ACV403 5.0 24.2 1.0

Reference:

P.Rabe, J.H.Beale, A.Butryn, P.Aller, A.Dirr, P.A.Lang, D.N.Axford, S.B.Carr, T.M.Leissing, M.A.Mcdonough, B.Davy, A.Ebrahim, J.Orlans, S.L.S.Storm, A.M.Orville, C.J.Schofield, R.L.Owen. Anaerobic Fixed-Target Serial Crystallography. Iucrj V. 7 901 2020.
ISSN: ESSN 2052-2525
PubMed: 32939282
DOI: 10.1107/S2052252520010374
Page generated: Wed Aug 7 15:48:51 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy