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Iron in PDB 6y12: Arginine Hydroxylase Vioc in Complex with (3S)-Oh-Arg, Succinate and Fe After Oxygen Exposure Using Ft-Ssx Methods

Enzymatic activity of Arginine Hydroxylase Vioc in Complex with (3S)-Oh-Arg, Succinate and Fe After Oxygen Exposure Using Ft-Ssx Methods

All present enzymatic activity of Arginine Hydroxylase Vioc in Complex with (3S)-Oh-Arg, Succinate and Fe After Oxygen Exposure Using Ft-Ssx Methods:
1.14.11.41;

Protein crystallography data

The structure of Arginine Hydroxylase Vioc in Complex with (3S)-Oh-Arg, Succinate and Fe After Oxygen Exposure Using Ft-Ssx Methods, PDB code: 6y12 was solved by P.Rabe, J.H.Beale, P.A.Lang, A.S.Dirr, T.M.Leissing, A.Butryn, P.Aller, J.J.A.G.Kamps, D.Axford, M.A.Mcdonough, A.M.Orville, R.Owen, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.07 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 82.369, 67.125, 63.984, 90.00, 110.15, 90.00
R / Rfree (%) 18.2 / 21

Iron Binding Sites:

The binding sites of Iron atom in the Arginine Hydroxylase Vioc in Complex with (3S)-Oh-Arg, Succinate and Fe After Oxygen Exposure Using Ft-Ssx Methods (pdb code 6y12). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Arginine Hydroxylase Vioc in Complex with (3S)-Oh-Arg, Succinate and Fe After Oxygen Exposure Using Ft-Ssx Methods, PDB code: 6y12:

Iron binding site 1 out of 1 in 6y12

Go back to Iron Binding Sites List in 6y12
Iron binding site 1 out of 1 in the Arginine Hydroxylase Vioc in Complex with (3S)-Oh-Arg, Succinate and Fe After Oxygen Exposure Using Ft-Ssx Methods


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Arginine Hydroxylase Vioc in Complex with (3S)-Oh-Arg, Succinate and Fe After Oxygen Exposure Using Ft-Ssx Methods within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:19.1
occ:1.00
 NE2 A:HIS316 2.0 20.8 1.0
OE1 A:GLU170 2.0 23.9 1.0
NE2 A:HIS168 2.2 21.0 1.0
O4 A:SIN401 2.2 25.0 1.0
O3 A:SIN401 2.3 25.7 1.0
OB A:ZZU403 2.6 52.9 0.7
C4 A:SIN401 2.6 25.3 1.0
HC A:ZZU403 2.8 63.4 0.7
CE1 A:HIS316 2.8 19.4 1.0
CE1 A:HIS168 3.0 19.8 1.0
HE1 A:HIS316 3.0 23.3 1.0
CD2 A:HIS316 3.0 18.6 1.0
CD A:GLU170 3.1 20.0 1.0
HE1 A:HIS168 3.1 23.8 1.0
HD2 A:HIS316 3.3 22.3 1.0
CD2 A:HIS168 3.3 18.9 1.0
OE2 A:GLU170 3.4 21.8 1.0
HD2 A:HIS168 3.6 22.7 1.0
HH11 A:ARG334 3.9 36.7 1.0
CB A:ZZU403 3.9 53.1 0.7
ND1 A:HIS316 3.9 18.9 1.0
HB A:ZZU403 4.0 63.7 0.7
HG2C A:ZZU403 4.0 62.5 0.7
CG A:HIS316 4.0 17.6 1.0
HB2 A:GLU170 4.1 16.3 1.0
C3 A:SIN401 4.1 24.5 1.0
ND1 A:HIS168 4.2 19.9 1.0
HN1 A:ZZU403 4.2 65.1 0.7
HD22 A:LEU165 4.2 24.6 1.0
HA A:GLU170 4.3 16.4 1.0
CG A:HIS168 4.3 19.2 1.0
HH12 A:ARG334 4.4 36.7 1.0
CG A:GLU170 4.4 16.4 1.0
NH1 A:ARG334 4.4 30.6 1.0
CG A:ZZU403 4.6 52.1 0.7
H31 A:SIN401 4.6 29.4 1.0
CB A:GLU170 4.6 13.6 1.0
H21 A:SIN401 4.6 28.8 1.0
H32 A:SIN401 4.7 29.4 1.0
HD1 A:HIS316 4.7 22.7 1.0
H22 A:SIN401 4.7 28.8 1.0
HD2 A:ARG334 4.8 31.1 1.0
C2 A:SIN401 4.8 24.0 1.0
HG2 A:GLU170 4.9 19.6 1.0
HG12 A:VAL181 4.9 21.6 1.0
HD1 A:HIS168 4.9 23.9 1.0
CA A:GLU170 4.9 13.7 1.0
HD21 A:LEU165 5.0 24.6 1.0
HG3 A:GLU170 5.0 19.6 1.0
CA A:ZZU403 5.0 54.2 0.7
N A:ZZU403 5.0 54.2 0.7
HG13 A:VAL181 5.0 21.6 1.0

Reference:

P.Rabe, J.H.Beale, A.Butryn, P.Aller, A.Dirr, P.A.Lang, D.N.Axford, S.B.Carr, T.M.Leissing, M.A.Mcdonough, B.Davy, A.Ebrahim, J.Orlans, S.L.S.Storm, A.M.Orville, C.J.Schofield, R.L.Owen. Anaerobic Fixed-Target Serial Crystallography. Iucrj V. 7 901 2020.
ISSN: ESSN 2052-2525
PubMed: 32939282
DOI: 10.1107/S2052252520010374
Page generated: Wed Aug 7 15:48:51 2024

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