Iron in PDB 6y8j: Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta

Enzymatic activity of Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta

All present enzymatic activity of Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta:
1.14.13.239;

Protein crystallography data

The structure of Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta, PDB code: 6y8j was solved by M.Quareshy, M.Shanmugam, T.D.Bugg, A.Cameron, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.05
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 91.600, 91.600, 82.960, 90.00, 90.00, 120.00
R / Rfree (%) 20.1 / 24.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta (pdb code 6y8j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta, PDB code: 6y8j:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6y8j

Go back to Iron Binding Sites List in 6y8j
Iron binding site 1 out of 2 in the Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:53.3
occ:1.00
FE1 A:FES401 0.0 53.3 1.0
S1 A:FES401 2.2 37.7 1.0
S2 A:FES401 2.2 38.9 1.0
ND1 A:HIS88 2.3 60.5 1.0
ND1 A:HIS109 2.3 59.0 1.0
FE2 A:FES401 2.9 49.1 1.0
CG A:HIS109 3.1 60.6 1.0
CE1 A:HIS88 3.2 55.0 1.0
CG A:HIS88 3.2 51.3 1.0
CB A:HIS109 3.3 51.1 1.0
CE1 A:HIS109 3.3 57.4 1.0
CB A:HIS88 3.5 48.5 1.0
N A:HIS109 3.8 49.2 1.0
CB A:TYR108 4.1 55.0 1.0
CA A:HIS109 4.1 53.9 1.0
N A:ARG89 4.2 43.4 1.0
CD2 A:HIS109 4.3 59.5 1.0
CD2 A:TYR108 4.3 47.6 1.0
CG A:TYR108 4.3 52.3 1.0
NE2 A:HIS88 4.3 56.6 1.0
NE2 A:HIS109 4.3 60.7 1.0
CD2 A:HIS88 4.4 53.2 1.0
CB A:ARG89 4.5 50.2 1.0
SG A:CYS86 4.6 39.9 1.0
C A:TYR108 4.7 53.7 1.0
SG A:CYS106 4.7 46.0 1.0
CA A:HIS88 4.7 47.3 1.0
C A:HIS88 4.9 50.6 1.0
C A:HIS109 4.9 50.9 1.0
CG A:ARG89 4.9 52.5 1.0
CA A:ARG89 4.9 49.5 1.0
CA A:TYR108 5.0 54.1 1.0

Iron binding site 2 out of 2 in 6y8j

Go back to Iron Binding Sites List in 6y8j
Iron binding site 2 out of 2 in the Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Apo Form of A Quaternary Ammonium Rieske Monooxygenase Cnta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:49.1
occ:1.00
FE2 A:FES401 0.0 49.1 1.0
S2 A:FES401 2.2 38.9 1.0
S1 A:FES401 2.2 37.7 1.0
SG A:CYS106 2.3 46.0 1.0
SG A:CYS86 2.4 39.9 1.0
FE1 A:FES401 2.9 53.3 1.0
CB A:CYS86 3.1 37.9 1.0
CB A:CYS106 3.2 45.1 1.0
CB A:TYR108 4.1 55.0 1.0
CB A:HIS88 4.2 48.5 1.0
N A:HIS109 4.4 49.2 1.0
CB A:HIS91 4.4 41.4 1.0
CA A:CYS86 4.6 43.6 1.0
ND1 A:HIS88 4.6 60.5 1.0
CA A:CYS106 4.6 47.6 1.0
N A:ARG89 4.8 43.4 1.0
N A:TYR108 4.8 51.6 1.0
CG A:HIS88 4.9 51.3 1.0
N A:HIS91 4.9 44.5 1.0
CA A:TYR108 5.0 54.1 1.0
N A:HIS88 5.0 46.7 1.0
C A:CYS106 5.0 44.1 1.0

Reference:

M.Quareshy, M.Shanmugam, E.Townsend, E.Jameson, T.D.H.Bugg, A.D.Cameron, Y.Chen. Structural Basis of Carnitine Monooxygenase Cnta Substrate Specificity, Inhibition and Inter-Subunit Electron Transfer. J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
PubMed: 33158989
DOI: 10.1074/JBC.RA120.016019
Page generated: Sun Dec 13 17:30:57 2020

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