Iron in PDB 6y9c: The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer

Enzymatic activity of The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer

All present enzymatic activity of The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer:
1.14.13.239;

Protein crystallography data

The structure of The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer, PDB code: 6y9c was solved by M.Quareshy, M.Shanmugam, T.D.Bugg, A.Cameron, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.23 / 1.80
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 91.242, 91.242, 87.366, 90, 90, 120
R / Rfree (%) 24.6 / 29.2

Iron Binding Sites:

The binding sites of Iron atom in the The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer (pdb code 6y9c). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer, PDB code: 6y9c:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 6y9c

Go back to Iron Binding Sites List in 6y9c
Iron binding site 1 out of 3 in the The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:41.1
occ:1.00
 N A:SCN403 2.2 34.6 1.0
OD1 A:ASP323 2.3 38.8 1.0
O A:HOH517 2.3 40.4 1.0
NE2 A:HIS208 2.4 44.6 1.0
OD2 A:ASP323 2.5 37.0 1.0
NE2 A:HIS213 2.6 69.2 1.0
CG A:ASP323 2.7 37.2 1.0
C A:SCN403 2.8 55.2 1.0
CD2 A:HIS213 3.0 72.3 1.0
CD2 A:HIS208 3.3 47.7 1.0
CE1 A:HIS208 3.4 43.2 1.0
CE1 A:HIS213 3.7 70.2 1.0
H41 A:152402 4.0 50.1 1.0
S A:SCN403 4.2 61.8 1.0
OD1 A:ASN202 4.2 39.7 1.0
CB A:ASP323 4.3 27.1 1.0
CG A:HIS213 4.3 71.4 1.0
H21 A:152402 4.3 44.2 1.0
ND2 A:ASN202 4.4 42.5 1.0
CG A:HIS208 4.5 46.5 1.0
O A:HOH576 4.5 28.7 1.0
ND1 A:HIS208 4.5 44.4 1.0
ND1 A:HIS213 4.6 71.5 1.0
O A:ASN202 4.6 26.2 1.0
CG A:ASN202 4.7 37.0 1.0
CE1 A:PHE319 4.7 47.6 1.0
H5C1 A:152402 4.7 53.3 1.0
C4 A:152402 5.0 41.6 1.0
CA A:ASP323 5.0 27.6 1.0
CZ A:PHE319 5.0 46.2 1.0
CD1 A:LEU326 5.0 27.7 1.0

Iron binding site 2 out of 3 in 6y9c

Go back to Iron Binding Sites List in 6y9c
Iron binding site 2 out of 3 in the The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe404

b:20.6
occ:1.00
 FE1 A:FES404 0.0 20.6 1.0
S2 A:FES404 2.2 30.9 1.0
SG A:CYS106 2.2 36.3 1.0
S1 A:FES404 2.3 27.7 1.0
SG A:CYS86 2.3 87.4 1.0
FE2 A:FES404 2.8 31.8 1.0
CB A:CYS86 2.8 60.4 1.0
CB A:CYS106 3.1 26.9 1.0
CB A:HIS88 4.3 27.5 1.0
CA A:CYS86 4.3 36.5 1.0
CB A:HIS91 4.5 29.2 1.0
CB A:TYR108 4.5 31.1 1.0
ND1 A:HIS88 4.5 32.4 1.0
CA A:CYS106 4.5 29.9 1.0
N A:ARG89 4.7 26.3 1.0
N A:HIS109 4.7 32.9 1.0
CB A:TRP111 4.8 38.2 1.0
N A:HIS88 4.9 30.0 1.0
C A:CYS86 4.9 30.1 1.0
N A:HIS91 4.9 26.6 1.0
CG A:HIS88 4.9 31.4 1.0
C A:CYS106 5.0 35.3 1.0

Iron binding site 3 out of 3 in 6y9c

Go back to Iron Binding Sites List in 6y9c
Iron binding site 3 out of 3 in the The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe404

b:31.8
occ:1.00
 FE2 A:FES404 0.0 31.8 1.0
S2 A:FES404 2.2 30.9 1.0
ND1 A:HIS88 2.2 32.4 1.0
S1 A:FES404 2.3 27.7 1.0
ND1 A:HIS109 2.5 27.9 1.0
FE1 A:FES404 2.8 20.6 1.0
CE1 A:HIS88 3.1 31.2 1.0
CB A:HIS109 3.2 31.4 1.0
CG A:HIS88 3.2 31.4 1.0
CG A:HIS109 3.2 32.4 1.0
CB A:HIS88 3.5 27.5 1.0
CE1 A:HIS109 3.6 29.6 1.0
N A:HIS109 3.8 32.9 1.0
CG A:ARG89 4.0 48.1 1.0
N A:ARG89 4.0 26.3 1.0
CA A:HIS109 4.1 31.8 1.0
CB A:TYR108 4.1 31.1 1.0
CB A:ARG89 4.1 40.8 1.0
SG A:CYS106 4.2 36.3 1.0
NE2 A:HIS88 4.2 29.5 1.0
SG A:CYS86 4.2 87.4 1.0
CD2 A:HIS88 4.3 30.2 1.0
CD2 A:HIS109 4.5 29.4 1.0
CD2 A:TYR108 4.5 30.0 1.0
CG A:TYR108 4.5 30.2 1.0
NE2 A:HIS109 4.6 33.3 1.0
CA A:HIS88 4.6 28.2 1.0
CA A:ARG89 4.7 29.4 1.0
C A:HIS88 4.7 34.7 1.0
C A:TYR108 4.7 32.1 1.0
C A:HIS109 4.9 29.6 1.0
CD1 A:TRP111 5.0 34.2 1.0

Reference:

M.Quareshy, M.Shanmugam, T.D.Bugg, A.Cameron, Y.Chen. The Structure of A Quaternary Ammonium Rieske Monooxygenase Reveals Insights Into Carnitine Oxidation By Gut Microbiota and Inter-Subunit Electron Transfer To Be Published.
Page generated: Sat Apr 3 15:51:35 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy