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Iron in PDB 6yal: Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna

Other elements in 6yal:

The structure of Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna (pdb code 6yal). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna, PDB code: 6yal:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 6yal

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Iron binding site 1 out of 8 in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe701

b:2.0
occ:1.00
 FE1 k:SF4701 0.0 2.0 1.0
S2 k:SF4701 2.1 2.0 1.0
S4 k:SF4701 2.1 2.0 1.0
S3 k:SF4701 2.2 2.0 1.0
SG k:CYS29 2.3 0.8 1.0
FE3 k:SF4701 3.0 2.0 1.0
FE2 k:SF4701 3.1 2.0 1.0
FE4 k:SF4701 3.1 2.0 1.0
S1 k:SF4701 3.6 2.0 1.0
CB k:CYS29 3.8 0.8 1.0
CD1 k:ILE39 4.0 0.8 1.0
SG k:CYS58 4.0 0.7 1.0
SG k:CYS61 4.3 0.8 1.0
SG k:CYS38 4.3 0.8 1.0
CD k:PRO30 4.4 0.8 1.0
SG k:CYS55 4.4 0.7 1.0
CA k:CYS29 4.6 0.8 1.0
CG1 k:ILE39 4.6 0.8 1.0
CG2 k:VAL31 4.9 0.8 1.0
CB k:VAL31 4.9 0.8 1.0
CB k:CYS61 4.9 0.8 1.0
N k:PRO30 5.0 0.8 1.0
CG k:PRO30 5.0 0.8 1.0
CB k:CYS38 5.0 0.8 1.0

Iron binding site 2 out of 8 in 6yal

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Iron binding site 2 out of 8 in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe701

b:2.0
occ:1.00
 FE2 k:SF4701 0.0 2.0 1.0
SG k:CYS55 1.7 0.7 1.0
S4 k:SF4701 2.1 2.0 1.0
S3 k:SF4701 2.1 2.0 1.0
S1 k:SF4701 2.1 2.0 1.0
CB k:CYS55 2.9 0.7 1.0
FE1 k:SF4701 3.1 2.0 1.0
FE4 k:SF4701 3.2 2.0 1.0
FE3 k:SF4701 3.3 2.0 1.0
CB k:ALA9 3.7 0.7 1.0
S2 k:SF4701 3.8 2.0 1.0
CA k:CYS55 3.8 0.7 1.0
SG k:CYS38 4.0 0.8 1.0
N k:ALA9 4.4 0.7 1.0
C k:CYS55 4.6 0.7 1.0
O k:GLY57 4.7 0.7 1.0
CA k:ALA9 4.7 0.7 1.0
CG2 k:ILE50 4.7 0.8 1.0
SG k:CYS61 4.8 0.8 1.0
N k:CYS55 4.9 0.7 1.0
N k:ILE56 4.9 0.6 1.0
N k:GLY57 5.0 0.7 1.0

Iron binding site 3 out of 8 in 6yal

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Iron binding site 3 out of 8 in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe701

b:2.0
occ:1.00
 FE3 k:SF4701 0.0 2.0 1.0
SG k:CYS61 1.6 0.8 1.0
S2 k:SF4701 2.1 2.0 1.0
S4 k:SF4701 2.1 2.0 1.0
S1 k:SF4701 2.2 2.0 1.0
FE1 k:SF4701 3.0 2.0 1.0
CB k:CYS61 3.1 0.8 1.0
FE4 k:SF4701 3.2 2.0 1.0
FE2 k:SF4701 3.3 2.0 1.0
S3 k:SF4701 3.7 2.0 1.0
N k:CYS61 4.1 0.8 1.0
CA k:CYS61 4.2 0.8 1.0
CB k:ALA9 4.3 0.7 1.0
SG k:CYS58 4.4 0.7 1.0
CD1 k:ILE39 4.4 0.8 1.0
SG k:CYS55 4.6 0.7 1.0
SG k:CYS29 4.8 0.8 1.0
N k:GLY59 4.8 0.8 1.0
O k:GLY57 4.8 0.7 1.0
N k:ILE62 4.9 0.8 1.0
CA k:GLY59 4.9 0.8 1.0
N k:ILE60 4.9 0.8 1.0
C k:CYS61 5.0 0.8 1.0

Iron binding site 4 out of 8 in 6yal

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Iron binding site 4 out of 8 in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe701

b:2.0
occ:1.00
 FE4 k:SF4701 0.0 2.0 1.0
SG k:CYS58 1.9 0.7 1.0
S1 k:SF4701 2.1 2.0 1.0
S3 k:SF4701 2.1 2.0 1.0
S2 k:SF4701 2.2 2.0 1.0
O k:GLY57 2.8 0.7 1.0
FE1 k:SF4701 3.1 2.0 1.0
FE2 k:SF4701 3.2 2.0 1.0
FE3 k:SF4701 3.2 2.0 1.0
C k:GLY57 3.2 0.7 1.0
SG k:CYS55 3.4 0.7 1.0
CB k:CYS58 3.5 0.7 1.0
N k:CYS58 3.7 0.7 1.0
N k:GLY59 3.7 0.8 1.0
S4 k:SF4701 3.7 2.0 1.0
N k:GLY57 3.8 0.7 1.0
CA k:CYS58 3.9 0.7 1.0
CA k:GLY57 4.0 0.7 1.0
C k:CYS58 4.3 0.7 1.0
CG2 k:ILE56 4.5 0.6 1.0
SG k:CYS61 4.6 0.8 1.0
CA k:GLY59 4.7 0.8 1.0
N k:ILE56 4.9 0.6 1.0
N k:ILE60 5.0 0.8 1.0

Iron binding site 5 out of 8 in 6yal

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Iron binding site 5 out of 8 in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe702

b:2.0
occ:1.00
 FE1 k:SF4702 0.0 2.0 1.0
S2 k:SF4702 2.1 2.0 1.0
S4 k:SF4702 2.2 2.0 1.0
S3 k:SF4702 2.2 2.0 1.0
SG k:CYS25 2.3 0.8 1.0
FE3 k:SF4702 3.1 2.0 1.0
FE4 k:SF4702 3.2 2.0 1.0
CB k:CYS25 3.3 0.8 1.0
FE2 k:SF4702 3.3 2.0 1.0
CD1 k:LEU70 3.7 0.7 1.0
S1 k:SF4702 3.8 2.0 1.0
SG k:CYS65 3.8 0.7 1.0
CB k:ALA48 4.3 0.8 1.0
N k:CYS25 4.5 0.8 1.0
CA k:CYS25 4.5 0.8 1.0
CD2 k:LEU70 4.6 0.7 1.0
SG k:CYS21 4.7 0.8 1.0
CG k:LEU70 4.8 0.7 1.0

Iron binding site 6 out of 8 in 6yal

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Iron binding site 6 out of 8 in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe702

b:2.0
occ:1.00
 FE2 k:SF4702 0.0 2.0 1.0
SG k:CYS21 1.7 0.8 1.0
S1 k:SF4702 2.1 2.0 1.0
S3 k:SF4702 2.1 2.0 1.0
S4 k:SF4702 2.2 2.0 1.0
CB k:CYS21 2.7 0.8 1.0
FE4 k:SF4702 3.2 2.0 1.0
FE3 k:SF4702 3.2 2.0 1.0
FE1 k:SF4702 3.3 2.0 1.0
S2 k:SF4702 3.8 2.0 1.0
CA k:CYS21 4.1 0.8 1.0
O k:LYS17 4.1 0.7 1.0
SG k:CYS65 4.1 0.7 1.0
CA k:GLN23 4.3 0.7 1.0
N k:GLN23 4.3 0.7 1.0
C k:CYS21 4.5 0.8 1.0
CA k:PRO18 4.5 0.7 1.0
CG k:PRO66 4.6 0.7 1.0
O k:CYS21 4.6 0.8 1.0
C k:LYS17 4.6 0.7 1.0
CD k:PRO66 4.6 0.7 1.0
N k:CYS21 4.8 0.8 1.0
CD2 k:PHE67 4.8 0.6 1.0
N k:PRO18 4.8 0.7 1.0
SG k:CYS25 4.8 0.8 1.0
N k:GLU24 4.9 0.7 1.0
CB k:GLN23 4.9 0.7 1.0

Iron binding site 7 out of 8 in 6yal

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Iron binding site 7 out of 8 in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe702

b:2.0
occ:1.00
 FE3 k:SF4702 0.0 2.0 1.0
SG k:CYS65 1.4 0.7 1.0
S4 k:SF4702 2.1 2.0 1.0
S2 k:SF4702 2.2 2.0 1.0
S1 k:SF4702 2.2 2.0 1.0
FE1 k:SF4702 3.1 2.0 1.0
FE4 k:SF4702 3.1 2.0 1.0
FE2 k:SF4702 3.2 2.0 1.0
CB k:CYS65 3.3 0.7 1.0
S3 k:SF4702 3.6 2.0 1.0
O k:PHE67 3.6 0.6 1.0
SG k:CYS25 3.7 0.8 1.0
CD1 k:LEU70 3.8 0.7 1.0
CA k:CYS65 4.2 0.7 1.0
CB k:ALA69 4.3 0.7 1.0
N k:PHE67 4.4 0.6 1.0
CD k:PRO66 4.4 0.7 1.0
C k:CYS65 4.5 0.7 1.0
N k:PRO66 4.6 0.7 1.0
C k:PHE67 4.6 0.6 1.0
CB k:PHE67 4.6 0.6 1.0
SG k:CYS21 4.8 0.8 1.0
CA k:PHE67 4.8 0.6 1.0
CD2 k:PHE67 4.9 0.6 1.0
CG k:PRO66 5.0 0.7 1.0
N k:ALA69 5.0 0.7 1.0

Iron binding site 8 out of 8 in 6yal

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Iron binding site 8 out of 8 in the Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Mammalian 48S Late-Stage Initiation Complex with Beta-Globin Mrna within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe702

b:2.0
occ:1.00
 FE4 k:SF4702 0.0 2.0 1.0
S3 k:SF4702 2.1 2.0 1.0
S1 k:SF4702 2.1 2.0 1.0
S2 k:SF4702 2.2 2.0 1.0
SG k:CYS16 2.8 0.7 1.0
FE3 k:SF4702 3.1 2.0 1.0
FE2 k:SF4702 3.2 2.0 1.0
FE1 k:SF4702 3.2 2.0 1.0
S4 k:SF4702 3.7 2.0 1.0
N k:LYS17 3.8 0.7 1.0
C k:CYS16 4.0 0.7 1.0
CB k:CYS16 4.1 0.7 1.0
CA k:CYS16 4.2 0.7 1.0
N k:PRO18 4.3 0.7 1.0
C k:LYS17 4.4 0.7 1.0
CB k:ALA69 4.4 0.7 1.0
CD1 k:LEU70 4.4 0.7 1.0
SG k:CYS21 4.5 0.8 1.0
SG k:CYS65 4.6 0.7 1.0
O k:CYS16 4.6 0.7 1.0
O k:LYS17 4.7 0.7 1.0
CA k:LYS17 4.7 0.7 1.0
CA k:PRO18 4.7 0.7 1.0
CB k:ALA48 4.7 0.8 1.0
CD k:PRO18 4.7 0.7 1.0

Reference:

A.Simonetti, E.Guca, A.Bochler, L.Kuhn, Y.Hashem. Structural Insights Into the Mammalian Late-Stage Initiation Complexes To Be Published.
Page generated: Wed Aug 7 15:56:02 2024

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