Iron in PDB 6yez: Plant Psi-Ferredoxin-Plastocyanin Supercomplex

All present enzymatic activity of Plant Psi-Ferredoxin-Plastocyanin Supercomplex:
1.97.1.12;

The structure of Plant Psi-Ferredoxin-Plastocyanin Supercomplex also contains other interesting chemical elements:

Magnesium	(Mg)	157 atoms
Calcium	(Ca)	2 atoms
Copper	(Cu)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Iron atom in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex (pdb code 6yez). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 14 binding sites of Iron where determined in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex, PDB code: 6yez:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe3001 b:63.6 occ:1.00 FE1 A:SF43001 0.0 63.6 1.0 S4 A:SF43001 2.3 63.6 1.0 S2 A:SF43001 2.3 63.6 1.0 S3 A:SF43001 2.3 63.6 1.0 SG A:CYS581 2.5 66.3 1.0 FE3 A:SF43001 2.7 63.6 1.0 FE2 A:SF43001 2.7 63.6 1.0 FE4 A:SF43001 2.7 63.6 1.0 CB A:CYS581 3.4 66.3 1.0 S1 A:SF43001 3.9 63.6 1.0 SG B:CYS559 4.3 63.7 1.0 O B:GLY561 4.3 62.0 1.0 CD1 A:ILE727 4.6 57.3 1.0 C B:GLY561 4.6 62.0 1.0 SG B:CYS568 4.6 59.6 1.0 CA A:CYS581 4.7 66.3 1.0 N B:PRO562 4.7 64.1 1.0 N A:CYS581 4.8 66.3 1.0 C A:GLY583 4.9 62.3 1.0 CB B:PRO562 4.9 64.1 1.0 O A:GLY583 4.9 62.3 1.0 CA B:PRO562 5.0 64.1 1.0 N A:GLY583 5.0 62.3 1.0

Iron binding site 2 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe3001 b:63.6 occ:1.00 FE2 A:SF43001 0.0 63.6 1.0 SG B:CYS559 2.1 63.7 1.0 S3 A:SF43001 2.3 63.6 1.0 S4 A:SF43001 2.3 63.6 1.0 S1 A:SF43001 2.3 63.6 1.0 FE1 A:SF43001 2.7 63.6 1.0 FE4 A:SF43001 2.7 63.6 1.0 FE3 A:SF43001 2.7 63.6 1.0 CB B:CYS559 2.7 63.7 1.0 S2 A:SF43001 3.9 63.6 1.0 CA B:CYS559 4.1 63.7 1.0 O B:GLY561 4.2 62.0 1.0 N B:CYS559 4.4 63.7 1.0 O B:PRO558 4.5 61.7 1.0 C B:PRO558 4.5 61.7 1.0 CB A:PRO584 4.5 59.5 1.0 CD1 B:ILE702 4.6 61.9 1.0 CA B:CYS568 4.7 59.6 1.0 N B:GLY561 4.7 62.0 1.0 C B:GLY561 4.7 62.0 1.0 C B:CYS559 4.8 63.7 1.0 SG B:CYS568 4.8 59.6 1.0 SG A:CYS581 4.9 66.3 1.0 N A:PRO584 4.9 59.5 1.0 CA B:GLY561 4.9 62.0 1.0 CD A:PRO584 5.0 59.5 1.0

Iron binding site 3 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe3001 b:63.6 occ:1.00 FE3 A:SF43001 0.0 63.6 1.0 S2 A:SF43001 2.3 63.6 1.0 S4 A:SF43001 2.3 63.6 1.0 S1 A:SF43001 2.3 63.6 1.0 SG B:CYS568 2.3 59.6 1.0 FE1 A:SF43001 2.7 63.6 1.0 FE4 A:SF43001 2.7 63.6 1.0 FE2 A:SF43001 2.7 63.6 1.0 CB B:CYS568 3.1 59.6 1.0 CA B:CYS568 3.5 59.6 1.0 CZ3 B:TRP667 3.9 58.5 1.0 S3 A:SF43001 3.9 63.6 1.0 N B:CYS568 4.0 59.6 1.0 CD1 A:ILE727 4.2 57.3 1.0 CB B:CYS559 4.5 63.7 1.0 CH2 B:TRP667 4.5 58.5 1.0 SG B:CYS559 4.6 63.7 1.0 CE3 B:TRP667 4.7 58.5 1.0 CG2 A:ILE727 4.9 57.3 1.0 C B:THR567 4.9 61.1 1.0 C B:CYS568 5.0 59.6 1.0

Iron binding site 4 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe3001 b:63.6 occ:1.00 FE4 A:SF43001 0.0 63.6 1.0 S3 A:SF43001 2.3 63.6 1.0 S1 A:SF43001 2.3 63.6 1.0 S2 A:SF43001 2.3 63.6 1.0 SG A:CYS590 2.7 62.4 1.0 FE1 A:SF43001 2.7 63.6 1.0 FE2 A:SF43001 2.7 63.6 1.0 FE3 A:SF43001 2.7 63.6 1.0 CB A:CYS590 3.4 62.4 1.0 CA A:CYS590 3.9 62.4 1.0 S4 A:SF43001 3.9 63.6 1.0 CD1 B:ILE702 4.2 61.9 1.0 CZ3 B:TRP667 4.2 58.5 1.0 CE3 B:TRP667 4.2 58.5 1.0 N A:CYS590 4.4 62.4 1.0 SG A:CYS581 4.8 66.3 1.0 SG B:CYS559 4.8 63.7 1.0 CB A:CYS581 4.9 66.3 1.0 SG B:CYS568 5.0 59.6 1.0

Iron binding site 5 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3002 b:72.3 occ:1.00 FE1 C:SF43002 0.0 72.3 1.0 S4 C:SF43002 2.3 72.3 1.0 S3 C:SF43002 2.3 72.3 1.0 S2 C:SF43002 2.3 72.3 1.0 SG C:CYS21 2.7 71.3 1.0 FE3 C:SF43002 2.7 72.3 1.0 FE2 C:SF43002 2.7 72.3 1.0 FE4 C:SF43002 2.7 72.3 1.0 CB C:CYS21 3.1 71.3 1.0 CA C:CYS21 3.7 71.3 1.0 S1 C:SF43002 3.9 72.3 1.0 CD C:PRO22 4.2 71.8 1.0 SG C:CYS51 4.4 64.5 1.0 OG1 C:THR23 4.5 75.1 1.0 CB C:VAL25 4.6 74.2 1.0 C C:CYS21 4.6 71.3 1.0 CD1 C:LEU26 4.6 74.3 1.0 CB C:CYS54 4.6 69.3 1.0 SG C:CYS54 4.6 69.3 1.0 CG2 C:VAL25 4.7 74.2 1.0 N C:PRO22 4.8 71.8 1.0 N C:CYS21 4.9 71.3 1.0 CG C:PRO22 4.9 71.8 1.0 SG C:CYS48 5.0 71.4 1.0

Iron binding site 6 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3002 b:72.3 occ:1.00 FE2 C:SF43002 0.0 72.3 1.0 S4 C:SF43002 2.3 72.3 1.0 S3 C:SF43002 2.3 72.3 1.0 S1 C:SF43002 2.3 72.3 1.0 SG C:CYS54 2.6 69.3 1.0 FE1 C:SF43002 2.7 72.3 1.0 FE3 C:SF43002 2.7 72.3 1.0 FE4 C:SF43002 2.7 72.3 1.0 CG2 C:VAL67 3.4 67.2 1.0 CB C:CYS54 3.6 69.3 1.0 CA C:LYS52 3.7 65.7 1.0 N C:LYS52 3.7 65.7 1.0 S2 C:SF43002 3.9 72.3 1.0 N C:CYS54 4.1 69.3 1.0 N C:ARG53 4.1 67.3 1.0 C C:LYS52 4.2 65.7 1.0 CA C:CYS54 4.4 69.3 1.0 SG C:CYS51 4.6 64.5 1.0 CB C:VAL67 4.6 67.2 1.0 SG C:CYS48 4.7 71.4 1.0 CG1 C:VAL67 4.8 67.2 1.0 CB C:LYS52 4.9 65.7 1.0 C C:CYS51 4.9 64.5 1.0

Iron binding site 7 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3002 b:72.3 occ:1.00 FE3 C:SF43002 0.0 72.3 1.0 S2 C:SF43002 2.3 72.3 1.0 S1 C:SF43002 2.3 72.3 1.0 S4 C:SF43002 2.3 72.3 1.0 SG C:CYS51 2.4 64.5 1.0 FE4 C:SF43002 2.7 72.3 1.0 FE1 C:SF43002 2.7 72.3 1.0 FE2 C:SF43002 2.7 72.3 1.0 N C:LYS52 3.0 65.7 1.0 N C:CYS51 3.2 64.5 1.0 CB C:CYS51 3.3 64.5 1.0 CA C:CYS51 3.5 64.5 1.0 C C:CYS51 3.6 64.5 1.0 S3 C:SF43002 3.9 72.3 1.0 CA C:LYS52 4.0 65.7 1.0 N C:ARG53 4.0 67.3 1.0 C C:GLY50 4.1 64.2 1.0 N C:GLY50 4.2 64.2 1.0 CG2 C:VAL49 4.3 67.1 1.0 CD C:PRO22 4.4 71.8 1.0 C C:LYS52 4.5 65.7 1.0 CA C:GLY50 4.5 64.2 1.0 SG C:CYS48 4.6 71.4 1.0 CG C:PRO22 4.6 71.8 1.0 O C:CYS51 4.7 64.5 1.0 N C:VAL49 4.9 67.1 1.0

Iron binding site 8 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3002 b:72.3 occ:1.00 FE4 C:SF43002 0.0 72.3 1.0 S2 C:SF43002 2.3 72.3 1.0 S1 C:SF43002 2.3 72.3 1.0 S3 C:SF43002 2.3 72.3 1.0 SG C:CYS48 2.3 71.4 1.0 FE3 C:SF43002 2.7 72.3 1.0 FE1 C:SF43002 2.7 72.3 1.0 FE2 C:SF43002 2.7 72.3 1.0 CB C:CYS48 3.3 71.4 1.0 CA C:CYS48 3.9 71.4 1.0 S4 C:SF43002 3.9 72.3 1.0 N C:GLY50 4.0 64.2 1.0 N C:VAL49 4.2 67.1 1.0 C C:CYS48 4.3 71.4 1.0 CG2 C:VAL5 4.4 70.0 1.0 CA C:GLY50 4.5 64.2 1.0 N C:CYS51 4.6 64.5 1.0 CG2 C:VAL67 4.6 67.2 1.0 CG2 C:VAL25 4.7 74.2 1.0 CG1 C:VAL67 4.7 67.2 1.0 N C:LYS52 4.8 65.7 1.0 SG C:CYS21 4.9 71.3 1.0 CB C:VAL25 4.9 74.2 1.0 C C:GLY50 5.0 64.2 1.0

Iron binding site 9 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3003 b:87.3 occ:1.00 FE1 C:SF43003 0.0 87.3 1.0 S4 C:SF43003 2.3 87.3 1.0 S3 C:SF43003 2.3 87.3 1.0 S2 C:SF43003 2.3 87.3 1.0 SG C:CYS14 2.5 87.8 1.0 FE2 C:SF43003 2.7 87.3 1.0 FE4 C:SF43003 2.7 87.3 1.0 FE3 C:SF43003 2.7 87.3 1.0 CB C:CYS14 3.5 87.8 1.0 N C:CYS14 3.6 87.8 1.0 CD C:PRO59 3.8 76.4 1.0 N C:THR15 3.8 83.4 1.0 S1 C:SF43003 3.9 87.3 1.0 CA C:CYS14 4.0 87.8 1.0 C C:CYS14 4.4 87.8 1.0 CG1 C:ILE12 4.4 88.4 1.0 CG C:PRO59 4.5 76.4 1.0 N C:GLY13 4.5 86.8 1.0 SG C:CYS58 4.5 74.2 1.0 C C:GLY13 4.6 86.8 1.0 N C:GLN16 4.6 88.9 1.0 CA C:THR15 4.8 83.4 1.0 CA C:CYS58 4.8 74.2 1.0 CA C:GLY13 4.8 86.8 1.0 SG C:CYS11 4.9 81.6 1.0 N C:ILE12 4.9 88.4 1.0 SG C:CYS17 5.0 77.3 1.0

Iron binding site 10 out of 14 in the Plant Psi-Ferredoxin-Plastocyanin Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Plant Psi-Ferredoxin-Plastocyanin Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3003 b:87.3 occ:1.00 FE2 C:SF43003 0.0 87.3 1.0 S3 C:SF43003 2.3 87.3 1.0 S4 C:SF43003 2.3 87.3 1.0 S1 C:SF43003 2.3 87.3 1.0 SG C:CYS11 2.7 81.6 1.0 FE1 C:SF43003 2.7 87.3 1.0 FE4 C:SF43003 2.7 87.3 1.0 FE3 C:SF43003 2.7 87.3 1.0 CB C:CYS11 3.4 81.6 1.0 CA C:CYS11 3.8 81.6 1.0 S2 C:SF43003 3.9 87.3 1.0 N C:GLY13 4.2 86.8 1.0 N C:ILE12 4.2 88.4 1.0 CB C:SER64 4.2 73.7 1.0 C C:CYS11 4.4 81.6 1.0 CB C:ALA40 4.6 77.8 1.0 CA C:GLY13 4.6 86.8 1.0 SG C:CYS58 4.7 74.2 1.0 N C:CYS14 4.8 87.8 1.0 SG C:CYS17 4.9 77.3 1.0 OG C:SER64 4.9 73.7 1.0

I.Caspy, A.Borovikova-Sheinker, D.Klaiman, Y.Shkolnisky, N.Nelson. The Structure of A Triple Complex of Plant Photosystem I with Ferredoxin and Plastocyanin. Nat.Plants V. 6 1300 2020.
ISSN: ESSN 2055-0278
PubMed: 33020607
DOI: 10.1038/S41477-020-00779-9