Atomistry » Iron » PDB 6zag-6zkg » 6zh5
Atomistry »
  Iron »
    PDB 6zag-6zkg »
      6zh5 »

Iron in PDB 6zh5: Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor (pdb code 6zh5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor, PDB code: 6zh5:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 1 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:138.2
occ:1.00
 OE2 V:GLU131 2.2 102.8 1.0
OE2 G:GLU131 2.2 106.1 1.0
OE2 A:GLU131 2.2 106.0 1.0
CD V:GLU131 3.4 102.8 1.0
CD G:GLU131 3.4 106.1 1.0
CD A:GLU131 3.5 106.0 1.0
OE1 V:GLU131 4.0 102.8 1.0
OE1 G:GLU131 4.1 106.1 1.0
OE1 A:GLU131 4.1 106.0 1.0
CB A:GLU131 4.4 106.0 1.0
CB G:GLU131 4.5 106.1 1.0
CB V:GLU131 4.5 102.8 1.0
CG V:GLU131 4.5 102.8 1.0
CG A:GLU131 4.5 106.0 1.0
CG G:GLU131 4.6 106.1 1.0
FE A:FE202 4.7 115.7 1.0
CA A:ASP128 4.8 103.5 1.0
CA G:ASP128 4.8 107.9 1.0
OD1 A:ASP128 4.8 103.5 1.0
CA V:ASP128 4.8 103.0 1.0
OD1 G:ASP128 4.9 107.9 1.0
OD1 V:ASP128 5.0 103.0 1.0
CB G:ASP128 5.0 107.9 1.0
CB A:ASP128 5.0 103.5 1.0

Iron binding site 2 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 2 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:115.7
occ:1.00
 OE1 A:GLU131 3.5 106.0 1.0
OE1 G:GLU131 3.6 106.1 1.0
OE1 V:GLU131 3.6 102.8 1.0
SG A:CYS127 3.9 104.1 1.0
SG G:CYS127 3.9 108.5 1.0
SG V:CYS127 4.0 103.9 1.0
CD A:GLU131 4.3 106.0 1.0
OE2 A:GLU131 4.3 106.0 1.0
CD G:GLU131 4.4 106.1 1.0
OE2 G:GLU131 4.5 106.1 1.0
CD V:GLU131 4.5 102.8 1.0
OE2 V:GLU131 4.5 102.8 1.0
FE A:FE201 4.7 138.2 1.0

Iron binding site 3 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 3 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:144.5
occ:1.00
 OE2 F:GLU131 2.1 107.7 1.0
OE2 C:GLU131 2.2 109.7 1.0
OE2 N:GLU131 2.6 108.3 1.0
CD F:GLU131 3.3 107.7 1.0
CD C:GLU131 3.5 109.7 1.0
CD N:GLU131 3.8 108.3 1.0
OE1 F:GLU131 3.9 107.7 1.0
OE1 C:GLU131 4.1 109.7 1.0
CB F:GLU131 4.4 107.7 1.0
CG F:GLU131 4.4 107.7 1.0
CB C:GLU131 4.5 109.7 1.0
OE1 N:GLU131 4.5 108.3 1.0
CG C:GLU131 4.6 109.7 1.0
OD1 N:ASP128 4.6 109.6 1.0
CB N:GLU131 4.6 108.3 1.0
FE F:FE201 4.7 118.3 1.0
CA N:ASP128 4.8 109.6 1.0
CA F:ASP128 4.8 106.5 1.0
CA C:ASP128 4.8 108.1 1.0
CG N:GLU131 4.8 108.3 1.0
OD1 C:ASP128 4.9 108.1 1.0
CB N:ASP128 4.9 109.6 1.0
OD1 F:ASP128 4.9 106.5 1.0
CB C:ASP128 5.0 108.1 1.0

Iron binding site 4 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 4 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:143.0
occ:1.00
 OE2 H:GLU131 2.0 110.9 1.0
OE2 R:GLU131 2.1 106.1 1.0
OE2 W:GLU131 2.2 108.5 1.0
CD H:GLU131 3.2 110.9 1.0
CD R:GLU131 3.2 106.1 1.0
CD W:GLU131 3.3 108.5 1.0
OE1 R:GLU131 3.7 106.1 1.0
OE1 H:GLU131 3.8 110.9 1.0
OE1 W:GLU131 3.9 108.5 1.0
CG H:GLU131 4.4 110.9 1.0
CB H:GLU131 4.4 110.9 1.0
CG R:GLU131 4.4 106.1 1.0
FE H:FE202 4.5 115.4 1.0
CB R:GLU131 4.5 106.1 1.0
CB W:GLU131 4.5 108.5 1.0
CG W:GLU131 4.5 108.5 1.0
CA H:ASP128 4.8 108.7 1.0
CA W:ASP128 4.8 110.6 1.0
CA R:ASP128 4.9 105.7 1.0
SG H:CYS127 5.0 109.4 1.0
SG R:CYS127 5.0 105.6 1.0

Iron binding site 5 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 5 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe202

b:115.4
occ:1.00
 OE1 W:GLU131 3.5 108.5 1.0
OE1 H:GLU131 3.5 110.9 1.0
OE1 R:GLU131 3.7 106.1 1.0
SG W:CYS127 3.9 111.0 1.0
SG H:CYS127 4.0 109.4 1.0
SG R:CYS127 4.0 105.6 1.0
CD W:GLU131 4.4 108.5 1.0
OE2 W:GLU131 4.4 108.5 1.0
CD H:GLU131 4.4 110.9 1.0
OE2 H:GLU131 4.5 110.9 1.0
FE H:FE201 4.5 143.0 1.0
CD R:GLU131 4.6 106.1 1.0
OE2 R:GLU131 4.6 106.1 1.0

Iron binding site 6 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 6 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:114.2
occ:1.00
 OE1 M:GLU131 3.5 104.3 1.0
OE1 I:GLU131 3.5 105.7 1.0
OE1 T:GLU131 3.6 103.0 1.0
SG T:CYS127 3.9 104.2 1.0
SG M:CYS127 3.9 106.0 1.0
SG I:CYS127 4.0 104.1 1.0
OE2 T:GLU131 4.3 103.0 1.0
OE2 M:GLU131 4.3 104.3 1.0
CD M:GLU131 4.3 104.3 1.0
CD T:GLU131 4.4 103.0 1.0
CD I:GLU131 4.4 105.7 1.0
OE2 I:GLU131 4.4 105.7 1.0
FE I:FE202 4.5 134.1 1.0

Iron binding site 7 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 7 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:134.1
occ:1.00
 OE2 I:GLU131 2.0 105.7 1.0
OE2 M:GLU131 2.3 104.3 1.0
OE2 T:GLU131 2.5 103.0 1.0
CD I:GLU131 3.2 105.7 1.0
CD M:GLU131 3.5 104.3 1.0
CD T:GLU131 3.7 103.0 1.0
OE1 I:GLU131 3.8 105.7 1.0
OE1 M:GLU131 4.1 104.3 1.0
CG I:GLU131 4.4 105.7 1.0
OE1 T:GLU131 4.4 103.0 1.0
CB I:GLU131 4.4 105.7 1.0
FE I:FE201 4.5 114.2 1.0
CB M:GLU131 4.5 104.3 1.0
CG M:GLU131 4.6 104.3 1.0
CB T:GLU131 4.7 103.0 1.0
OD1 T:ASP128 4.7 103.4 1.0
CA I:ASP128 4.8 103.0 1.0
CA T:ASP128 4.8 103.4 1.0
CG T:GLU131 4.8 103.0 1.0
CA M:ASP128 4.8 105.5 1.0
CB T:ASP128 4.9 103.4 1.0
OD1 M:ASP128 4.9 105.5 1.0
SG I:CYS127 5.0 104.1 1.0

Iron binding site 8 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 8 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe201

b:144.0
occ:1.00
 OE2 Q:GLU131 2.1 106.2 1.0
OE2 J:GLU131 2.1 105.2 1.0
OE2 P:GLU131 2.2 105.5 1.0
CD Q:GLU131 3.2 106.2 1.0
CD J:GLU131 3.3 105.2 1.0
CD P:GLU131 3.4 105.5 1.0
OE1 Q:GLU131 3.8 106.2 1.0
OE1 J:GLU131 3.9 105.2 1.0
OE1 P:GLU131 4.0 105.5 1.0
CG Q:GLU131 4.4 106.2 1.0
CG J:GLU131 4.5 105.2 1.0
CB Q:GLU131 4.5 106.2 1.0
CB J:GLU131 4.5 105.2 1.0
FE J:FE202 4.5 114.2 1.0
CB P:GLU131 4.6 105.5 1.0
CG P:GLU131 4.6 105.5 1.0
CA J:ASP128 4.8 105.6 1.0
CA Q:ASP128 4.8 105.1 1.0
CA P:ASP128 4.9 105.7 1.0
SG Q:CYS127 5.0 106.0 1.0

Iron binding site 9 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 9 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe202

b:114.2
occ:1.00
 OE1 P:GLU131 3.5 105.5 1.0
OE1 J:GLU131 3.6 105.2 1.0
OE1 Q:GLU131 3.6 106.2 1.0
SG J:CYS127 3.9 105.8 1.0
SG Q:CYS127 4.0 106.0 1.0
SG P:CYS127 4.1 106.1 1.0
CD P:GLU131 4.4 105.5 1.0
OE2 P:GLU131 4.4 105.5 1.0
CD J:GLU131 4.4 105.2 1.0
OE2 J:GLU131 4.5 105.2 1.0
FE J:FE201 4.5 144.0 1.0
CD Q:GLU131 4.5 106.2 1.0
OE2 Q:GLU131 4.6 106.2 1.0

Iron binding site 10 out of 16 in 6zh5

Go back to Iron Binding Sites List in 6zh5
Iron binding site 10 out of 16 in the Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Folding of An Iron Binding Peptide in Response to Sedimentation Is Resolved Using Ferritin As A Nano-Reactor within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe201

b:136.7
occ:1.00
 OE2 U:GLU131 2.0 110.5 1.0
OE2 K:GLU131 2.2 105.3 1.0
OE2 S:GLU131 2.5 105.3 1.0
CD U:GLU131 3.2 110.5 1.0
CD K:GLU131 3.4 105.3 1.0
CD S:GLU131 3.7 105.3 1.0
OE1 U:GLU131 3.8 110.5 1.0
OE1 K:GLU131 4.0 105.3 1.0
OE1 S:GLU131 4.4 105.3 1.0
CG U:GLU131 4.4 110.5 1.0
CB U:GLU131 4.4 110.5 1.0
FE U:FE201 4.5 117.0 1.0
CG K:GLU131 4.6 105.3 1.0
CB K:GLU131 4.6 105.3 1.0
CB S:GLU131 4.7 105.3 1.0
CA U:ASP128 4.7 108.9 1.0
OD1 S:ASP128 4.7 103.8 1.0
CA S:ASP128 4.8 103.8 1.0
CG S:GLU131 4.8 105.3 1.0
CA K:ASP128 4.9 107.6 1.0
CB S:ASP128 4.9 103.8 1.0
CB U:ASP128 4.9 108.9 1.0
SG U:CYS127 4.9 109.8 1.0
OD1 U:ASP128 5.0 108.9 1.0

Reference:

G.Davidov, G.Abelya, R.Zalk, B.Izbicki, S.Shaibi, L.Spektor, D.Shagidov, E.G.Meyron-Holtz, R.Zarivach, G.A.Frank. Folding of An Intrinsically Disordered Iron-Binding Peptide in Response to Sedimentation Revealed By Cryo-Em. J.Am.Chem.Soc. V. 142 19551 2020.
ISSN: ESSN 1520-5126
PubMed: 33166133
DOI: 10.1021/JACS.0C07565
Page generated: Wed Aug 7 18:24:28 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy