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Iron in PDB 6zkk: Complex I Inhibited By Rotenone, Closed

Enzymatic activity of Complex I Inhibited By Rotenone, Closed

All present enzymatic activity of Complex I Inhibited By Rotenone, Closed:
1.6.99.3; 7.1.1.2;

Other elements in 6zkk:

The structure of Complex I Inhibited By Rotenone, Closed also contains other interesting chemical elements:

Potassium (K) 1 atom
Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Complex I Inhibited By Rotenone, Closed (pdb code 6zkk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Complex I Inhibited By Rotenone, Closed, PDB code: 6zkk:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 6zkk

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Iron binding site 1 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:14.2
occ:1.00
 FE1 1:SF4501 0.0 14.2 1.0
S3 1:SF4501 2.3 24.6 1.0
S2 1:SF4501 2.3 46.9 1.0
S4 1:SF4501 2.3 64.6 1.0
SG 1:CYS365 2.3 14.4 1.0
FE2 1:SF4501 2.7 47.6 1.0
FE3 1:SF4501 2.7 19.6 1.0
FE4 1:SF4501 2.8 24.3 1.0
CB 1:CYS365 2.9 22.4 1.0
OG 1:SER358 3.4 15.7 1.0
S1 1:SF4501 4.2 0.7 1.0
CA 1:CYS365 4.4 21.6 1.0
CD2 1:LEU407 4.4 37.3 1.0
N 1:CYS359 4.5 18.2 1.0
CB 1:SER358 4.7 17.0 1.0
N 1:GLY360 4.7 17.9 1.0
CB 1:LEU407 4.8 30.3 1.0
C 1:CYS365 4.8 17.0 1.0
N 1:ARG366 4.9 14.7 1.0
CA 1:SER358 5.0 21.3 1.0

Iron binding site 2 out of 28 in 6zkk

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Iron binding site 2 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:47.6
occ:1.00
 FE2 1:SF4501 0.0 47.6 1.0
S3 1:SF4501 2.3 24.6 1.0
S1 1:SF4501 2.3 0.7 1.0
S4 1:SF4501 2.3 64.6 1.0
FE3 1:SF4501 2.5 19.6 1.0
FE4 1:SF4501 2.5 24.3 1.0
FE1 1:SF4501 2.7 14.2 1.0
SG 1:CYS362 3.1 25.1 1.0
N 1:CYS362 3.4 31.9 1.0
S2 1:SF4501 3.8 46.9 1.0
CB 1:GLN361 3.9 16.2 1.0
CB 1:CYS362 3.9 42.9 1.0
N 1:GLN361 4.1 27.2 1.0
CA 1:CYS362 4.2 36.7 1.0
CB 1:CYS365 4.2 22.4 1.0
CA 1:GLN361 4.3 33.2 1.0
C 1:GLN361 4.4 30.1 1.0
O 1:CYS362 4.5 25.1 1.0
CD1 1:ILE404 4.6 41.8 1.0
SG 1:CYS365 4.6 14.4 1.0
OE1 1:GLN361 4.7 21.8 1.0
C 1:CYS362 4.7 29.7 1.0
CB 1:ILE404 4.8 19.3 1.0
CG1 1:ILE404 4.8 24.3 1.0
CG 1:GLN361 4.8 14.0 1.0
SG 1:CYS359 4.8 42.9 1.0
N 1:ILE404 4.9 19.0 1.0

Iron binding site 3 out of 28 in 6zkk

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Iron binding site 3 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:19.6
occ:1.00
 FE3 1:SF4501 0.0 19.6 1.0
S4 1:SF4501 2.3 64.6 1.0
S1 1:SF4501 2.3 0.7 1.0
S2 1:SF4501 2.4 46.9 1.0
FE4 1:SF4501 2.4 24.3 1.0
FE2 1:SF4501 2.5 47.6 1.0
FE1 1:SF4501 2.7 14.2 1.0
SG 1:CYS359 3.0 42.9 1.0
CD 1:PRO203 3.6 12.1 1.0
S3 1:SF4501 3.7 24.6 1.0
CG 1:PRO203 4.0 19.0 1.0
CB 1:GLN361 4.1 16.2 1.0
CB 1:CYS359 4.1 28.3 1.0
N 1:CYS359 4.2 18.2 1.0
N 1:GLN361 4.3 27.2 1.0
OE1 1:GLN361 4.4 21.8 1.0
N 1:GLY360 4.6 17.9 1.0
CA 1:CYS359 4.6 21.8 1.0
SG 1:CYS405 4.7 22.3 1.0
CG1 1:ILE185 4.7 22.0 1.0
CD1 1:ILE185 4.8 17.5 1.0
C 1:CYS359 4.8 19.6 1.0
CA 1:GLN361 4.8 33.2 1.0
CB 1:PRO203 4.9 21.2 1.0
N 1:PRO203 5.0 18.0 1.0

Iron binding site 4 out of 28 in 6zkk

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Iron binding site 4 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe501

b:24.3
occ:1.00
 FE4 1:SF4501 0.0 24.3 1.0
S2 1:SF4501 2.3 46.9 1.0
S1 1:SF4501 2.3 0.7 1.0
S3 1:SF4501 2.4 24.6 1.0
FE3 1:SF4501 2.4 19.6 1.0
FE2 1:SF4501 2.5 47.6 1.0
FE1 1:SF4501 2.8 14.2 1.0
SG 1:CYS405 3.1 22.3 1.0
N 1:CYS405 3.7 16.2 1.0
S4 1:SF4501 3.8 64.6 1.0
CB 1:CYS405 4.0 14.9 1.0
CA 1:CYS405 4.3 15.6 1.0
CG 1:PRO203 4.4 19.0 1.0
O 1:CYS405 4.4 18.4 1.0
CB 1:ILE404 4.5 19.3 1.0
C 1:CYS405 4.5 13.4 1.0
N 1:ILE404 4.6 19.0 1.0
C 1:ILE404 4.8 18.6 1.0
CD 1:PRO203 4.8 12.1 1.0
CB 1:LEU407 4.8 30.3 1.0
CA 1:ILE404 4.9 17.3 1.0
SG 1:CYS365 4.9 14.4 1.0
SG 1:CYS362 4.9 25.1 1.0
CB 1:CYS365 5.0 22.4 1.0
CB 1:PRO203 5.0 21.2 1.0
CB 1:THR403 5.0 23.5 1.0

Iron binding site 5 out of 28 in 6zkk

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Iron binding site 5 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe300

b:0.5
occ:1.00
 FE1 2:FES300 0.0 0.5 1.0
S2 2:FES300 2.2 65.8 1.0
S1 2:FES300 2.2 69.2 1.0
SG 2:CYS108 2.3 43.2 1.0
SG 2:CYS103 2.3 61.5 1.0
FE2 2:FES300 3.0 56.3 1.0
CB 2:CYS103 3.3 55.3 1.0
CB 2:CYS108 3.5 41.3 1.0
OG1 2:THR105 3.7 42.3 1.0
N 2:CYS108 4.3 38.8 1.0
CA 2:CYS108 4.4 42.6 1.0
CA 2:CYS144 4.5 36.9 1.0
SD 2:MET153 4.6 70.5 1.0
CG 2:MET153 4.6 47.5 1.0
SG 2:CYS144 4.6 0.4 1.0
CA 2:CYS103 4.6 45.4 1.0
C 2:CYS103 4.7 32.2 1.0
O 2:CYS103 4.8 30.4 1.0
N 2:LEU145 4.8 25.1 1.0
CB 2:CYS144 4.9 55.2 1.0
N 2:THR105 4.9 27.7 1.0
C 2:PRO107 4.9 32.9 1.0
SG 2:CYS148 5.0 88.5 1.0

Iron binding site 6 out of 28 in 6zkk

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Iron binding site 6 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe300

b:56.3
occ:1.00
 FE2 2:FES300 0.0 56.3 1.0
S2 2:FES300 2.2 65.8 1.0
S1 2:FES300 2.2 69.2 1.0
SG 2:CYS148 2.3 88.5 1.0
SG 2:CYS144 2.3 0.4 1.0
FE1 2:FES300 3.0 0.5 1.0
CB 2:CYS144 3.6 55.2 1.0
CB 2:CYS148 3.7 76.0 1.0
CA 2:CYS148 4.0 55.8 1.0
N 2:GLY146 4.0 24.9 1.0
CA 2:CYS144 4.1 36.9 1.0
N 2:CYS148 4.1 50.1 1.0
N 2:LEU145 4.1 25.1 1.0
N 2:ALA147 4.2 43.5 1.0
CA 1:PRO102 4.3 39.3 1.0
N 1:GLY103 4.4 41.2 1.0
OG1 2:THR105 4.4 42.3 1.0
SG 2:CYS103 4.5 61.5 1.0
CA 2:GLY146 4.5 29.1 1.0
C 2:CYS144 4.6 35.1 1.0
C 2:ALA147 4.6 38.1 1.0
CB 1:PRO102 4.8 38.0 1.0
C 2:GLY146 4.8 41.0 1.0
C 1:PRO102 4.9 37.8 1.0
CB 2:PRO107 4.9 39.7 1.0
O 1:GLU101 5.0 34.8 1.0
C 2:LEU145 5.0 27.4 1.0
CG 2:PRO107 5.0 46.4 1.0
SG 2:CYS108 5.0 43.2 1.0

Iron binding site 7 out of 28 in 6zkk

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Iron binding site 7 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:67.7
occ:1.00
 FE1 3:SF4801 0.0 67.7 1.0
S2 3:SF4801 2.3 67.7 1.0
S3 3:SF4801 2.3 67.7 1.0
S4 3:SF4801 2.3 67.7 1.0
SG 3:CYS114 2.3 68.3 1.0
FE3 3:SF4801 2.7 67.7 1.0
FE4 3:SF4801 2.7 67.7 1.0
FE2 3:SF4801 2.7 67.7 1.0
CB 3:CYS114 3.4 30.0 1.0
S1 3:SF4801 3.9 67.7 1.0
CG 3:GLN117 4.0 37.6 1.0
NE2 3:HIS101 4.1 41.1 1.0
CB 3:LEU116 4.5 19.0 1.0
N 3:GLN117 4.6 48.3 1.0
NE2 3:GLN117 4.6 61.4 1.0
CD 3:GLN117 4.6 43.2 1.0
CG 3:GLN110 4.6 42.3 1.0
CB 3:GLN110 4.7 36.8 1.0
N 3:GLY206 4.7 18.5 1.0
CA 3:VAL205 4.7 6.6 1.0
CE1 3:HIS101 4.8 51.6 1.0
CA 3:CYS114 4.8 14.9 1.0
SG 3:CYS108 4.8 96.3 1.0
SG 3:CYS105 4.8 44.2 1.0
CD2 3:LEU116 4.9 55.2 1.0
CB 3:GLN117 4.9 20.9 1.0
CB 3:VAL205 5.0 17.4 1.0

Iron binding site 8 out of 28 in 6zkk

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Iron binding site 8 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:67.7
occ:1.00
 FE2 3:SF4801 0.0 67.7 1.0
S4 3:SF4801 2.3 67.7 1.0
S1 3:SF4801 2.3 67.7 1.0
S3 3:SF4801 2.3 67.7 1.0
SG 3:CYS105 2.3 44.2 1.0
FE3 3:SF4801 2.7 67.7 1.0
FE4 3:SF4801 2.7 67.7 1.0
FE1 3:SF4801 2.7 67.7 1.0
CB 3:CYS105 3.4 33.7 1.0
NE2 3:GLN117 3.5 61.4 1.0
CA 3:CYS105 3.5 18.6 1.0
S2 3:SF4801 3.9 67.7 1.0
N 3:CYS105 3.9 17.3 1.0
CG 3:GLN117 4.0 37.6 1.0
NE2 3:HIS101 4.0 41.1 1.0
CD 3:GLN117 4.2 43.2 1.0
CE 4:MET342 4.3 54.7 1.0
C 3:ASP104 4.6 16.8 1.0
CD2 3:HIS101 4.7 40.4 1.0
SG 3:CYS108 4.8 96.3 1.0
C 3:CYS105 4.9 7.6 1.0
SG 3:CYS114 4.9 68.3 1.0
CB 3:CYS108 4.9 61.6 1.0

Iron binding site 9 out of 28 in 6zkk

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Iron binding site 9 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:67.7
occ:1.00
 FE3 3:SF4801 0.0 67.7 1.0
NE2 3:HIS101 1.9 41.1 1.0
S2 3:SF4801 2.3 67.7 1.0
S1 3:SF4801 2.3 67.7 1.0
S4 3:SF4801 2.3 67.7 1.0
CE1 3:HIS101 2.6 51.6 1.0
FE2 3:SF4801 2.7 67.7 1.0
FE1 3:SF4801 2.7 67.7 1.0
FE4 3:SF4801 2.8 67.7 1.0
CD2 3:HIS101 3.1 40.4 1.0
ND1 3:HIS101 3.8 44.3 1.0
S3 3:SF4801 3.9 67.7 1.0
CG 3:HIS101 4.1 44.7 1.0
CD2 3:LEU116 4.5 55.2 1.0
CB 3:ARG152 4.6 54.9 1.0
O 3:PRO102 4.7 6.1 1.0
SG 3:CYS105 4.7 44.2 1.0
SG 3:CYS114 4.8 68.3 1.0
SG 3:CYS108 4.8 96.3 1.0
CE 4:MET342 4.8 54.7 1.0
CG 3:ARG152 4.9 46.3 1.0
N 3:GLY206 4.9 18.5 1.0
O 3:ARG152 4.9 18.7 1.0
CD 3:ARG152 4.9 53.7 1.0
CB 3:VAL205 5.0 17.4 1.0

Iron binding site 10 out of 28 in 6zkk

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Iron binding site 10 out of 28 in the Complex I Inhibited By Rotenone, Closed


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Complex I Inhibited By Rotenone, Closed within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:67.7
occ:1.00
 FE4 3:SF4801 0.0 67.7 1.0
S2 3:SF4801 2.3 67.7 1.0
S1 3:SF4801 2.3 67.7 1.0
S3 3:SF4801 2.3 67.7 1.0
SG 3:CYS108 2.3 96.3 1.0
FE2 3:SF4801 2.7 67.7 1.0
FE1 3:SF4801 2.7 67.7 1.0
FE3 3:SF4801 2.8 67.7 1.0
CB 3:CYS108 3.2 61.6 1.0
S4 3:SF4801 3.9 67.7 1.0
CB 3:GLN110 4.2 36.8 1.0
N 3:GLY206 4.3 18.5 1.0
CA 3:CYS105 4.5 18.6 1.0
CA 3:GLY206 4.5 17.0 1.0
CD 3:ARG152 4.5 53.7 1.0
NE2 3:HIS101 4.6 41.1 1.0
CA 3:CYS108 4.7 30.7 1.0
N 3:GLY111 4.7 7.2 1.0
O 3:ASP104 4.7 18.6 1.0
SG 3:CYS114 4.8 68.3 1.0
SG 3:CYS105 4.8 44.2 1.0
N 3:CYS105 4.8 17.3 1.0
NH1 3:ARG152 4.8 44.1 1.0
C 3:GLN110 4.8 11.5 1.0
C 3:ASP104 4.9 16.8 1.0
CA 3:GLN110 4.9 15.1 1.0
N 3:GLN110 4.9 13.8 1.0

Reference:

D.Kampjut, L.A.Sazanov. The Coupling Mechanism of Mammalian Respiratory Complex I. Science V. 370 2020.
ISSN: ESSN 1095-9203
PubMed: 32972993
DOI: 10.1126/SCIENCE.ABC4209
Page generated: Wed Aug 7 19:36:00 2024

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