Iron in PDB 6zlf: Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Protein crystallography data
The structure of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton, PDB code: 6zlf
was solved by
S.Engilberge,
T.Wagner,
P.Carpentier,
E.Girard,
S.Shima,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.40 /
1.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
75.025,
162.553,
134.376,
90.00,
93.75,
90.00
|
R / Rfree (%)
|
18.2 /
19.7
|
Other elements in 6zlf:
The structure of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
(pdb code 6zlf). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton, PDB code: 6zlf:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 1 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:29.2
occ:0.80
|
FE1
|
A:FEO502
|
0.0
|
29.2
|
0.8
|
O
|
A:FEO502
|
2.1
|
28.0
|
0.8
|
OD1
|
A:ASP171
|
2.1
|
30.8
|
1.0
|
NE2
|
A:HIS234
|
2.2
|
26.6
|
1.0
|
OD2
|
A:ASP88
|
2.2
|
35.2
|
1.0
|
NE2
|
A:HIS89
|
2.2
|
31.1
|
1.0
|
O
|
A:HOH781
|
2.3
|
36.0
|
0.5
|
O
|
A:HOH781
|
3.1
|
36.0
|
0.5
|
CG
|
A:ASP171
|
3.1
|
34.5
|
1.0
|
CD2
|
A:HIS234
|
3.1
|
26.5
|
1.0
|
CD2
|
A:HIS89
|
3.1
|
30.2
|
1.0
|
CE1
|
A:HIS89
|
3.2
|
30.3
|
1.0
|
CE1
|
A:HIS234
|
3.2
|
26.1
|
1.0
|
CG
|
A:ASP88
|
3.2
|
32.7
|
1.0
|
OD2
|
A:ASP171
|
3.3
|
36.3
|
1.0
|
FE2
|
A:FEO502
|
3.5
|
30.2
|
0.5
|
OD1
|
A:ASP88
|
3.6
|
34.4
|
1.0
|
OH
|
A:TYR25
|
3.6
|
63.9
|
1.0
|
OG
|
A:SER233
|
4.1
|
31.4
|
1.0
|
CG
|
A:HIS89
|
4.3
|
32.6
|
1.0
|
CG
|
A:HIS234
|
4.3
|
26.4
|
1.0
|
ND1
|
A:HIS89
|
4.3
|
31.9
|
1.0
|
ND1
|
A:HIS234
|
4.3
|
27.0
|
1.0
|
CB
|
A:ASP171
|
4.4
|
29.8
|
1.0
|
CB
|
A:ASP88
|
4.5
|
31.1
|
1.0
|
O
|
A:HOH749
|
4.5
|
49.2
|
1.0
|
OE2
|
A:GLU86
|
4.8
|
39.1
|
1.0
|
CZ
|
A:TYR25
|
4.8
|
69.1
|
1.0
|
CD2
|
A:HIS84
|
4.8
|
41.1
|
1.0
|
|
Iron binding site 2 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 2 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:30.2
occ:0.50
|
FE2
|
A:FEO502
|
0.0
|
30.2
|
0.5
|
OD2
|
A:ASP171
|
2.1
|
36.3
|
1.0
|
OE2
|
A:GLU86
|
2.1
|
39.1
|
1.0
|
O
|
A:FEO502
|
2.1
|
28.0
|
0.8
|
NE2
|
A:HIS152
|
2.1
|
55.9
|
1.0
|
NE2
|
A:HIS84
|
2.3
|
42.5
|
1.0
|
O
|
A:HOH781
|
2.7
|
36.0
|
0.5
|
CD2
|
A:HIS84
|
3.1
|
41.1
|
1.0
|
CD2
|
A:HIS152
|
3.1
|
55.3
|
1.0
|
CD
|
A:GLU86
|
3.1
|
51.9
|
1.0
|
CG
|
A:ASP171
|
3.1
|
34.5
|
1.0
|
CE1
|
A:HIS152
|
3.2
|
56.7
|
1.0
|
CE1
|
A:HIS84
|
3.5
|
44.0
|
1.0
|
FE1
|
A:FEO502
|
3.5
|
29.2
|
0.8
|
OD1
|
A:ASP171
|
3.6
|
30.8
|
1.0
|
O
|
A:HOH781
|
3.7
|
36.0
|
0.5
|
CB
|
A:GLU86
|
3.8
|
34.2
|
1.0
|
OE1
|
A:GLU86
|
3.9
|
45.4
|
1.0
|
CG
|
A:GLU86
|
4.0
|
41.5
|
1.0
|
CG
|
A:HIS152
|
4.2
|
57.5
|
1.0
|
ND1
|
A:HIS152
|
4.3
|
57.2
|
1.0
|
CG
|
A:HIS84
|
4.3
|
45.9
|
1.0
|
CB
|
A:ASP171
|
4.3
|
29.8
|
1.0
|
OD1
|
A:ASP88
|
4.5
|
34.4
|
1.0
|
ND1
|
A:HIS84
|
4.5
|
42.1
|
1.0
|
O
|
A:HOH657
|
4.6
|
45.3
|
1.0
|
CD2
|
A:HIS89
|
4.7
|
30.2
|
1.0
|
OD2
|
A:ASP88
|
4.7
|
35.2
|
1.0
|
NE2
|
A:HIS89
|
4.8
|
31.1
|
1.0
|
OD1
|
A:ASN170
|
4.9
|
35.0
|
1.0
|
NE1
|
A:TRP153
|
4.9
|
54.6
|
1.0
|
CE2
|
A:TRP153
|
5.0
|
54.9
|
1.0
|
|
Iron binding site 3 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 3 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe509
b:29.0
occ:0.80
|
FE1
|
F:FEO509
|
0.0
|
29.0
|
0.8
|
O
|
F:FEO509
|
2.1
|
28.8
|
0.8
|
OD2
|
F:ASP88
|
2.1
|
32.3
|
1.0
|
NE2
|
F:HIS234
|
2.2
|
27.8
|
1.0
|
NE2
|
F:HIS89
|
2.2
|
30.3
|
1.0
|
OD1
|
F:ASP171
|
2.2
|
32.2
|
1.0
|
O
|
F:HOH792
|
2.6
|
30.0
|
1.0
|
CG
|
F:ASP88
|
3.1
|
33.2
|
1.0
|
CD2
|
F:HIS89
|
3.1
|
30.1
|
1.0
|
CG
|
F:ASP171
|
3.1
|
33.4
|
1.0
|
CD2
|
F:HIS234
|
3.2
|
26.1
|
1.0
|
CE1
|
F:HIS89
|
3.2
|
30.0
|
1.0
|
CE1
|
F:HIS234
|
3.2
|
29.0
|
1.0
|
OD2
|
F:ASP171
|
3.4
|
33.4
|
1.0
|
O
|
F:HOH819
|
3.4
|
30.0
|
1.0
|
OD1
|
F:ASP88
|
3.5
|
32.1
|
1.0
|
FE2
|
F:FEO509
|
3.6
|
28.7
|
0.6
|
OG
|
F:SER233
|
4.1
|
27.9
|
1.0
|
CG
|
F:HIS89
|
4.3
|
30.1
|
1.0
|
ND1
|
F:HIS89
|
4.3
|
31.2
|
1.0
|
CG
|
F:HIS234
|
4.3
|
26.9
|
1.0
|
ND1
|
F:HIS234
|
4.3
|
27.7
|
1.0
|
CB
|
F:ASP88
|
4.4
|
26.3
|
1.0
|
CB
|
F:ASP171
|
4.5
|
27.8
|
1.0
|
O
|
F:HOH726
|
4.7
|
30.0
|
1.0
|
OH
|
F:TYR25
|
4.8
|
72.1
|
1.0
|
OE2
|
F:GLU86
|
4.8
|
40.4
|
1.0
|
CD2
|
F:HIS84
|
4.9
|
36.6
|
1.0
|
|
Iron binding site 4 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 4 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe509
b:28.7
occ:0.60
|
FE2
|
F:FEO509
|
0.0
|
28.7
|
0.6
|
OD2
|
F:ASP171
|
2.1
|
33.4
|
1.0
|
OE2
|
F:GLU86
|
2.1
|
40.4
|
1.0
|
O
|
F:FEO509
|
2.1
|
28.8
|
0.8
|
NE2
|
F:HIS152
|
2.1
|
45.6
|
1.0
|
NE2
|
F:HIS84
|
2.3
|
39.0
|
1.0
|
O
|
F:HOH819
|
2.9
|
30.0
|
1.0
|
CD2
|
F:HIS84
|
3.1
|
36.6
|
1.0
|
CD
|
F:GLU86
|
3.1
|
45.6
|
1.0
|
CD2
|
F:HIS152
|
3.1
|
45.6
|
1.0
|
CG
|
F:ASP171
|
3.2
|
33.4
|
1.0
|
CE1
|
F:HIS152
|
3.2
|
45.5
|
1.0
|
CE1
|
F:HIS84
|
3.5
|
41.2
|
1.0
|
FE1
|
F:FEO509
|
3.6
|
29.0
|
0.8
|
OD1
|
F:ASP171
|
3.6
|
32.2
|
1.0
|
CB
|
F:GLU86
|
3.8
|
32.8
|
1.0
|
OE1
|
F:GLU86
|
3.9
|
42.0
|
1.0
|
CG
|
F:GLU86
|
4.0
|
37.1
|
1.0
|
O
|
F:HOH792
|
4.1
|
30.0
|
1.0
|
CG
|
F:HIS152
|
4.2
|
47.5
|
1.0
|
ND1
|
F:HIS152
|
4.3
|
51.4
|
1.0
|
CG
|
F:HIS84
|
4.3
|
37.0
|
1.0
|
CB
|
F:ASP171
|
4.4
|
27.8
|
1.0
|
OD1
|
F:ASP88
|
4.4
|
32.1
|
1.0
|
ND1
|
F:HIS84
|
4.5
|
37.7
|
1.0
|
CD2
|
F:HIS89
|
4.6
|
30.1
|
1.0
|
OD2
|
F:ASP88
|
4.7
|
32.3
|
1.0
|
O
|
F:HOH661
|
4.7
|
36.6
|
1.0
|
NE2
|
F:HIS89
|
4.7
|
30.3
|
1.0
|
OD1
|
F:ASN170
|
4.9
|
35.3
|
1.0
|
NE1
|
F:TRP153
|
4.9
|
44.9
|
1.0
|
CG
|
F:ASP88
|
5.0
|
33.2
|
1.0
|
CE2
|
F:TRP153
|
5.0
|
45.9
|
1.0
|
|
Iron binding site 5 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 5 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe502
b:26.3
occ:0.80
|
FE1
|
G:FEO502
|
0.0
|
26.3
|
0.8
|
O
|
G:FEO502
|
2.1
|
26.1
|
0.8
|
NE2
|
G:HIS234
|
2.2
|
26.2
|
1.0
|
OD1
|
G:ASP171
|
2.2
|
28.4
|
1.0
|
OD2
|
G:ASP88
|
2.2
|
31.2
|
1.0
|
NE2
|
G:HIS89
|
2.2
|
30.2
|
1.0
|
O
|
G:HOH801
|
2.3
|
31.9
|
1.0
|
CG
|
G:ASP171
|
3.1
|
31.7
|
1.0
|
CD2
|
G:HIS234
|
3.1
|
25.9
|
1.0
|
CD2
|
G:HIS89
|
3.1
|
29.1
|
1.0
|
CE1
|
G:HIS234
|
3.2
|
26.4
|
1.0
|
CG
|
G:ASP88
|
3.2
|
30.0
|
1.0
|
CE1
|
G:HIS89
|
3.2
|
31.4
|
1.0
|
O
|
G:HOH803
|
3.3
|
30.0
|
1.0
|
OD2
|
G:ASP171
|
3.4
|
34.5
|
1.0
|
FE2
|
G:FEO502
|
3.5
|
26.5
|
0.5
|
OD1
|
G:ASP88
|
3.5
|
30.5
|
1.0
|
OG
|
G:SER233
|
4.1
|
28.1
|
1.0
|
CG
|
G:HIS234
|
4.3
|
24.9
|
1.0
|
CG
|
G:HIS89
|
4.3
|
28.9
|
1.0
|
ND1
|
G:HIS89
|
4.3
|
29.9
|
1.0
|
ND1
|
G:HIS234
|
4.3
|
27.1
|
1.0
|
CB
|
G:ASP88
|
4.5
|
29.5
|
1.0
|
CB
|
G:ASP171
|
4.5
|
27.0
|
1.0
|
OH
|
G:TYR25
|
4.6
|
68.5
|
1.0
|
O
|
G:HOH726
|
4.7
|
53.7
|
1.0
|
OE2
|
G:GLU86
|
4.8
|
34.9
|
1.0
|
CD2
|
G:HIS84
|
4.8
|
33.3
|
1.0
|
|
Iron binding site 6 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 6 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe502
b:26.5
occ:0.50
|
FE2
|
G:FEO502
|
0.0
|
26.5
|
0.5
|
OD2
|
G:ASP171
|
2.0
|
34.5
|
1.0
|
O
|
G:FEO502
|
2.1
|
26.1
|
0.8
|
OE2
|
G:GLU86
|
2.1
|
34.9
|
1.0
|
NE2
|
G:HIS152
|
2.2
|
50.5
|
1.0
|
NE2
|
G:HIS84
|
2.3
|
36.5
|
1.0
|
O
|
G:HOH803
|
2.8
|
30.0
|
1.0
|
CD2
|
G:HIS84
|
3.1
|
33.3
|
1.0
|
CG
|
G:ASP171
|
3.1
|
31.7
|
1.0
|
CD2
|
G:HIS152
|
3.1
|
49.4
|
1.0
|
CD
|
G:GLU86
|
3.1
|
44.5
|
1.0
|
CE1
|
G:HIS152
|
3.2
|
51.5
|
1.0
|
CE1
|
G:HIS84
|
3.5
|
39.0
|
1.0
|
FE1
|
G:FEO502
|
3.5
|
26.3
|
0.8
|
OD1
|
G:ASP171
|
3.6
|
28.4
|
1.0
|
O
|
G:HOH801
|
3.7
|
31.9
|
1.0
|
CB
|
G:GLU86
|
3.8
|
29.6
|
1.0
|
OE1
|
G:GLU86
|
3.9
|
40.8
|
1.0
|
CG
|
G:GLU86
|
4.0
|
33.9
|
1.0
|
CG
|
G:HIS152
|
4.3
|
48.9
|
1.0
|
CB
|
G:ASP171
|
4.3
|
27.0
|
1.0
|
ND1
|
G:HIS152
|
4.3
|
50.4
|
1.0
|
CG
|
G:HIS84
|
4.3
|
36.8
|
1.0
|
OD1
|
G:ASP88
|
4.4
|
30.5
|
1.0
|
ND1
|
G:HIS84
|
4.5
|
37.9
|
1.0
|
O
|
G:HOH687
|
4.6
|
37.0
|
1.0
|
CD2
|
G:HIS89
|
4.6
|
29.1
|
1.0
|
OD2
|
G:ASP88
|
4.7
|
31.2
|
1.0
|
NE2
|
G:HIS89
|
4.7
|
30.2
|
1.0
|
OD1
|
G:ASN170
|
4.9
|
37.4
|
1.0
|
|
Iron binding site 7 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 7 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe701
b:32.1
occ:0.50
|
FE1
|
H:FEO701
|
0.0
|
32.1
|
0.5
|
OD2
|
H:ASP171
|
2.0
|
38.8
|
1.0
|
NE2
|
H:HIS152
|
2.1
|
55.4
|
1.0
|
O
|
H:FEO701
|
2.1
|
32.5
|
0.8
|
OE2
|
H:GLU86
|
2.1
|
40.8
|
1.0
|
NE2
|
H:HIS84
|
2.3
|
43.2
|
1.0
|
CD2
|
H:HIS152
|
3.1
|
57.6
|
1.0
|
O
|
H:HOH963
|
3.1
|
31.1
|
0.5
|
CG
|
H:ASP171
|
3.1
|
37.6
|
1.0
|
CD2
|
H:HIS84
|
3.1
|
39.6
|
1.0
|
CE1
|
H:HIS152
|
3.1
|
53.7
|
1.0
|
CD
|
H:GLU86
|
3.2
|
52.8
|
1.0
|
FE2
|
H:FEO701
|
3.5
|
32.5
|
0.8
|
CE1
|
H:HIS84
|
3.5
|
46.2
|
1.0
|
OD1
|
H:ASP171
|
3.6
|
34.8
|
1.0
|
CB
|
H:GLU86
|
3.9
|
38.4
|
1.0
|
O
|
H:HOH963
|
3.9
|
31.1
|
0.5
|
OE1
|
H:GLU86
|
3.9
|
54.9
|
1.0
|
CG
|
H:GLU86
|
4.0
|
44.7
|
1.0
|
CG
|
H:HIS152
|
4.2
|
59.0
|
1.0
|
ND1
|
H:HIS152
|
4.2
|
56.2
|
1.0
|
CB
|
H:ASP171
|
4.3
|
36.3
|
1.0
|
CG
|
H:HIS84
|
4.3
|
43.3
|
1.0
|
OD1
|
H:ASP88
|
4.5
|
35.9
|
1.0
|
ND1
|
H:HIS84
|
4.5
|
46.2
|
1.0
|
CD2
|
H:HIS89
|
4.7
|
32.2
|
1.0
|
OD2
|
H:ASP88
|
4.7
|
35.7
|
1.0
|
NE2
|
H:HIS89
|
4.8
|
34.1
|
1.0
|
O
|
H:HOH915
|
4.8
|
43.4
|
1.0
|
OD1
|
H:ASN170
|
4.9
|
39.9
|
1.0
|
NE1
|
H:TRP153
|
5.0
|
56.6
|
1.0
|
|
Iron binding site 8 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 8 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe701
b:32.5
occ:0.80
|
FE2
|
H:FEO701
|
0.0
|
32.5
|
0.8
|
O
|
H:FEO701
|
2.1
|
32.5
|
0.8
|
OD1
|
H:ASP171
|
2.2
|
34.8
|
1.0
|
OD2
|
H:ASP88
|
2.2
|
35.7
|
1.0
|
NE2
|
H:HIS234
|
2.2
|
29.3
|
1.0
|
NE2
|
H:HIS89
|
2.2
|
34.1
|
1.0
|
O
|
H:HOH963
|
2.4
|
31.1
|
0.5
|
O
|
H:HOH963
|
2.9
|
31.1
|
0.5
|
CG
|
H:ASP171
|
3.1
|
37.6
|
1.0
|
CD2
|
H:HIS89
|
3.2
|
32.2
|
1.0
|
CD2
|
H:HIS234
|
3.2
|
29.1
|
1.0
|
CG
|
H:ASP88
|
3.2
|
36.4
|
1.0
|
CE1
|
H:HIS89
|
3.2
|
35.6
|
1.0
|
CE1
|
H:HIS234
|
3.2
|
29.4
|
1.0
|
OD2
|
H:ASP171
|
3.3
|
38.8
|
1.0
|
FE1
|
H:FEO701
|
3.5
|
32.1
|
0.5
|
OD1
|
H:ASP88
|
3.6
|
35.9
|
1.0
|
OG
|
H:SER233
|
4.1
|
35.9
|
1.0
|
CG
|
H:HIS89
|
4.3
|
34.6
|
1.0
|
CG
|
H:HIS234
|
4.3
|
29.9
|
1.0
|
ND1
|
H:HIS89
|
4.3
|
35.2
|
1.0
|
ND1
|
H:HIS234
|
4.4
|
30.4
|
1.0
|
CB
|
H:ASP171
|
4.4
|
36.3
|
1.0
|
CB
|
H:ASP88
|
4.5
|
36.8
|
1.0
|
O
|
H:HOH803
|
4.6
|
30.0
|
0.6
|
OE2
|
H:GLU86
|
4.7
|
40.8
|
1.0
|
CD2
|
H:HIS84
|
4.8
|
39.6
|
1.0
|
CD
|
H:GLU86
|
5.0
|
52.8
|
1.0
|
|
Iron binding site 9 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 9 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe503
b:25.0
occ:0.80
|
FE1
|
I:FEO503
|
0.0
|
25.0
|
0.8
|
O
|
I:FEO503
|
2.1
|
23.6
|
0.8
|
NE2
|
I:HIS89
|
2.2
|
27.0
|
1.0
|
OD1
|
I:ASP171
|
2.2
|
27.2
|
1.0
|
NE2
|
I:HIS234
|
2.2
|
24.9
|
1.0
|
OD2
|
I:ASP88
|
2.2
|
28.8
|
1.0
|
O
|
I:HOH601
|
2.5
|
30.0
|
1.0
|
CG
|
I:ASP171
|
3.1
|
31.4
|
1.0
|
CD2
|
I:HIS89
|
3.1
|
27.9
|
1.0
|
CD2
|
I:HIS234
|
3.2
|
23.6
|
1.0
|
CE1
|
I:HIS89
|
3.2
|
25.6
|
1.0
|
CG
|
I:ASP88
|
3.2
|
29.8
|
1.0
|
CE1
|
I:HIS234
|
3.2
|
24.8
|
1.0
|
OD2
|
I:ASP171
|
3.3
|
31.0
|
1.0
|
O
|
I:HOH832
|
3.4
|
30.0
|
1.0
|
OH
|
I:TYR25
|
3.5
|
67.6
|
1.0
|
FE2
|
I:FEO503
|
3.5
|
24.0
|
0.5
|
OD1
|
I:ASP88
|
3.5
|
29.6
|
1.0
|
OG
|
I:SER233
|
4.1
|
27.4
|
1.0
|
CG
|
I:HIS89
|
4.2
|
27.9
|
1.0
|
ND1
|
I:HIS89
|
4.3
|
25.7
|
1.0
|
CG
|
I:HIS234
|
4.3
|
23.5
|
1.0
|
ND1
|
I:HIS234
|
4.3
|
24.6
|
1.0
|
CB
|
I:ASP171
|
4.5
|
24.5
|
1.0
|
CB
|
I:ASP88
|
4.5
|
23.4
|
1.0
|
OE2
|
I:GLU86
|
4.7
|
35.4
|
1.0
|
O
|
I:HOH759
|
4.7
|
30.0
|
1.0
|
CZ
|
I:TYR25
|
4.8
|
65.2
|
1.0
|
CD2
|
I:HIS84
|
4.8
|
34.8
|
1.0
|
|
Iron binding site 10 out
of 16 in 6zlf
Go back to
Iron Binding Sites List in 6zlf
Iron binding site 10 out
of 16 in the Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Aerobic Crystal Structure of F420H2-Oxidase From Methanothermococcus Thermolithotrophicus at 1.8A Resolution Under 125 Bars of Krypton within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe503
b:24.0
occ:0.50
|
FE2
|
I:FEO503
|
0.0
|
24.0
|
0.5
|
OD2
|
I:ASP171
|
2.0
|
31.0
|
1.0
|
OE2
|
I:GLU86
|
2.1
|
35.4
|
1.0
|
O
|
I:FEO503
|
2.1
|
23.6
|
0.8
|
NE2
|
I:HIS152
|
2.1
|
50.2
|
1.0
|
NE2
|
I:HIS84
|
2.3
|
36.5
|
1.0
|
O
|
I:HOH832
|
2.8
|
30.0
|
1.0
|
CD2
|
I:HIS84
|
3.0
|
34.8
|
1.0
|
CD2
|
I:HIS152
|
3.1
|
51.2
|
1.0
|
CG
|
I:ASP171
|
3.1
|
31.4
|
1.0
|
CD
|
I:GLU86
|
3.1
|
44.4
|
1.0
|
CE1
|
I:HIS152
|
3.2
|
49.8
|
1.0
|
CE1
|
I:HIS84
|
3.4
|
38.1
|
1.0
|
FE1
|
I:FEO503
|
3.5
|
25.0
|
0.8
|
OD1
|
I:ASP171
|
3.6
|
27.2
|
1.0
|
CB
|
I:GLU86
|
3.8
|
28.7
|
1.0
|
O
|
I:HOH601
|
3.8
|
30.0
|
1.0
|
OE1
|
I:GLU86
|
4.0
|
37.4
|
1.0
|
CG
|
I:GLU86
|
4.0
|
34.8
|
1.0
|
CG
|
I:HIS152
|
4.2
|
48.9
|
1.0
|
ND1
|
I:HIS152
|
4.3
|
51.9
|
1.0
|
CG
|
I:HIS84
|
4.3
|
34.6
|
1.0
|
CB
|
I:ASP171
|
4.3
|
24.5
|
1.0
|
OD1
|
I:ASP88
|
4.4
|
29.6
|
1.0
|
ND1
|
I:HIS84
|
4.5
|
36.0
|
1.0
|
O
|
I:HOH671
|
4.6
|
33.4
|
1.0
|
CD2
|
I:HIS89
|
4.6
|
27.9
|
1.0
|
NE2
|
I:HIS89
|
4.7
|
27.0
|
1.0
|
OD2
|
I:ASP88
|
4.7
|
28.8
|
1.0
|
OD1
|
I:ASN170
|
4.9
|
31.1
|
1.0
|
|
Reference:
S.Engilberge,
T.Wagner,
P.Carpentier,
E.Girard,
S.Shima.
Krypton-Derivatization Highlights O 2 -Channeling in A Four-Electron Reducing Oxidase. Chem.Commun.(Camb.) V. 56 10863 2020.
ISSN: ESSN 1364-548X
PubMed: 32940290
DOI: 10.1039/D0CC04557H
Page generated: Wed Aug 7 20:24:25 2024
|