Iron in PDB 6zmx: Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution
Protein crystallography data
The structure of Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution, PDB code: 6zmx
was solved by
R.Pandian,
N.Shobana,
S.S.Sundaresan,
Y.Sayed,
M.N.Ponnuswamy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
60.84 /
1.39
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.760,
82.140,
90.540,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.7 /
22.3
|
Other elements in 6zmx:
The structure of Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution
(pdb code 6zmx). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution, PDB code: 6zmx:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 6zmx
Go back to
Iron Binding Sites List in 6zmx
Iron binding site 1 out
of 4 in the Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:16.0
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
16.0
|
1.0
|
NC
|
A:HEM201
|
2.0
|
17.0
|
1.0
|
NB
|
A:HEM201
|
2.0
|
15.3
|
1.0
|
NA
|
A:HEM201
|
2.0
|
18.4
|
1.0
|
ND
|
A:HEM201
|
2.1
|
16.1
|
1.0
|
NE2
|
A:HIS87
|
2.2
|
16.3
|
1.0
|
O
|
A:HOH303
|
2.3
|
28.9
|
1.0
|
C1C
|
A:HEM201
|
3.0
|
15.1
|
1.0
|
C4B
|
A:HEM201
|
3.0
|
16.2
|
1.0
|
C4C
|
A:HEM201
|
3.1
|
16.2
|
1.0
|
C4D
|
A:HEM201
|
3.1
|
20.8
|
1.0
|
C1D
|
A:HEM201
|
3.1
|
16.1
|
1.0
|
C1A
|
A:HEM201
|
3.1
|
16.7
|
1.0
|
CE1
|
A:HIS87
|
3.1
|
15.4
|
1.0
|
C1B
|
A:HEM201
|
3.1
|
14.8
|
1.0
|
C4A
|
A:HEM201
|
3.1
|
15.3
|
1.0
|
CD2
|
A:HIS87
|
3.2
|
17.6
|
1.0
|
CHC
|
A:HEM201
|
3.3
|
17.6
|
1.0
|
CHA
|
A:HEM201
|
3.4
|
17.9
|
1.0
|
CHD
|
A:HEM201
|
3.5
|
16.6
|
1.0
|
CHB
|
A:HEM201
|
3.5
|
16.3
|
1.0
|
NE2
|
A:HIS58
|
4.2
|
18.7
|
1.0
|
C2C
|
A:HEM201
|
4.2
|
16.2
|
1.0
|
ND1
|
A:HIS87
|
4.2
|
18.3
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
17.4
|
1.0
|
C3B
|
A:HEM201
|
4.3
|
18.0
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
16.8
|
1.0
|
C3D
|
A:HEM201
|
4.3
|
18.1
|
1.0
|
C2D
|
A:HEM201
|
4.3
|
15.2
|
1.0
|
C2A
|
A:HEM201
|
4.3
|
21.8
|
1.0
|
CG
|
A:HIS87
|
4.3
|
16.3
|
1.0
|
CE1
|
A:HIS58
|
4.3
|
21.8
|
1.0
|
C3A
|
A:HEM201
|
4.3
|
19.2
|
1.0
|
CG2
|
A:VAL62
|
4.9
|
18.3
|
1.0
|
|
Iron binding site 2 out
of 4 in 6zmx
Go back to
Iron Binding Sites List in 6zmx
Iron binding site 2 out
of 4 in the Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:20.7
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
20.7
|
1.0
|
NC
|
B:HEM201
|
2.0
|
17.8
|
1.0
|
NA
|
B:HEM201
|
2.0
|
20.0
|
1.0
|
ND
|
B:HEM201
|
2.0
|
19.2
|
1.0
|
NB
|
B:HEM201
|
2.1
|
19.5
|
1.0
|
NE2
|
B:HIS92
|
2.2
|
21.1
|
1.0
|
O
|
B:HOH333
|
2.3
|
28.8
|
1.0
|
C1C
|
B:HEM201
|
3.0
|
19.3
|
1.0
|
C4A
|
B:HEM201
|
3.0
|
23.1
|
1.0
|
C4C
|
B:HEM201
|
3.0
|
17.1
|
1.0
|
C1D
|
B:HEM201
|
3.0
|
18.1
|
1.0
|
C4B
|
B:HEM201
|
3.1
|
20.4
|
1.0
|
C1A
|
B:HEM201
|
3.1
|
22.0
|
1.0
|
C4D
|
B:HEM201
|
3.1
|
22.4
|
1.0
|
C1B
|
B:HEM201
|
3.1
|
18.6
|
1.0
|
CE1
|
B:HIS92
|
3.1
|
25.4
|
1.0
|
CD2
|
B:HIS92
|
3.2
|
20.1
|
1.0
|
CHC
|
B:HEM201
|
3.4
|
19.9
|
1.0
|
CHD
|
B:HEM201
|
3.4
|
18.9
|
1.0
|
CHB
|
B:HEM201
|
3.4
|
20.0
|
1.0
|
CHA
|
B:HEM201
|
3.5
|
21.0
|
1.0
|
C2C
|
B:HEM201
|
4.2
|
18.4
|
1.0
|
NE2
|
B:HIS63
|
4.2
|
25.7
|
1.0
|
C3A
|
B:HEM201
|
4.3
|
26.9
|
1.0
|
C3C
|
B:HEM201
|
4.3
|
19.1
|
1.0
|
C2D
|
B:HEM201
|
4.3
|
24.5
|
1.0
|
ND1
|
B:HIS92
|
4.3
|
25.7
|
1.0
|
C3D
|
B:HEM201
|
4.3
|
22.3
|
1.0
|
C2A
|
B:HEM201
|
4.3
|
26.2
|
1.0
|
C2B
|
B:HEM201
|
4.3
|
19.4
|
1.0
|
C3B
|
B:HEM201
|
4.3
|
21.1
|
1.0
|
CG
|
B:HIS92
|
4.3
|
21.5
|
1.0
|
CG2
|
B:VAL67
|
4.7
|
24.7
|
1.0
|
CE1
|
B:HIS63
|
4.7
|
26.1
|
1.0
|
|
Iron binding site 3 out
of 4 in 6zmx
Go back to
Iron Binding Sites List in 6zmx
Iron binding site 3 out
of 4 in the Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:17.0
occ:1.00
|
FE
|
C:HEM201
|
0.0
|
17.0
|
1.0
|
NC
|
C:HEM201
|
2.0
|
17.3
|
1.0
|
NB
|
C:HEM201
|
2.0
|
16.5
|
1.0
|
NA
|
C:HEM201
|
2.0
|
18.2
|
1.0
|
ND
|
C:HEM201
|
2.0
|
17.4
|
1.0
|
NE2
|
C:HIS87
|
2.2
|
17.6
|
1.0
|
O
|
C:HOH307
|
2.3
|
26.5
|
1.0
|
C1C
|
C:HEM201
|
3.0
|
15.7
|
1.0
|
C4B
|
C:HEM201
|
3.0
|
16.5
|
1.0
|
C4C
|
C:HEM201
|
3.1
|
13.2
|
1.0
|
C4D
|
C:HEM201
|
3.1
|
18.4
|
1.0
|
C1B
|
C:HEM201
|
3.1
|
18.4
|
1.0
|
C1A
|
C:HEM201
|
3.1
|
20.5
|
1.0
|
C4A
|
C:HEM201
|
3.1
|
16.8
|
1.0
|
C1D
|
C:HEM201
|
3.1
|
15.9
|
1.0
|
CE1
|
C:HIS87
|
3.1
|
18.9
|
1.0
|
CD2
|
C:HIS87
|
3.2
|
18.6
|
1.0
|
CHC
|
C:HEM201
|
3.4
|
18.1
|
1.0
|
CHA
|
C:HEM201
|
3.4
|
17.8
|
1.0
|
CHB
|
C:HEM201
|
3.4
|
15.1
|
1.0
|
CHD
|
C:HEM201
|
3.4
|
16.3
|
1.0
|
C2C
|
C:HEM201
|
4.2
|
17.9
|
1.0
|
C3C
|
C:HEM201
|
4.3
|
15.6
|
1.0
|
C3B
|
C:HEM201
|
4.3
|
18.7
|
1.0
|
ND1
|
C:HIS87
|
4.3
|
19.5
|
1.0
|
NE2
|
C:HIS58
|
4.3
|
21.1
|
1.0
|
C2B
|
C:HEM201
|
4.3
|
16.3
|
1.0
|
C3D
|
C:HEM201
|
4.3
|
21.4
|
1.0
|
C2D
|
C:HEM201
|
4.3
|
18.2
|
1.0
|
C3A
|
C:HEM201
|
4.3
|
22.5
|
1.0
|
C2A
|
C:HEM201
|
4.3
|
23.9
|
1.0
|
CG
|
C:HIS87
|
4.3
|
17.8
|
1.0
|
CE1
|
C:HIS58
|
4.3
|
22.8
|
1.0
|
CG2
|
C:VAL62
|
4.8
|
18.9
|
1.0
|
|
Iron binding site 4 out
of 4 in 6zmx
Go back to
Iron Binding Sites List in 6zmx
Iron binding site 4 out
of 4 in the Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:17.2
occ:1.00
|
FE
|
D:HEM201
|
0.0
|
17.2
|
1.0
|
NC
|
D:HEM201
|
2.0
|
14.5
|
1.0
|
NA
|
D:HEM201
|
2.0
|
15.6
|
1.0
|
ND
|
D:HEM201
|
2.1
|
17.4
|
1.0
|
NB
|
D:HEM201
|
2.1
|
15.9
|
1.0
|
NE2
|
D:HIS92
|
2.2
|
19.8
|
1.0
|
O
|
D:HOH325
|
2.2
|
22.6
|
1.0
|
C4A
|
D:HEM201
|
3.0
|
17.2
|
1.0
|
C4C
|
D:HEM201
|
3.0
|
14.9
|
1.0
|
C1C
|
D:HEM201
|
3.0
|
14.4
|
1.0
|
C1D
|
D:HEM201
|
3.0
|
18.0
|
1.0
|
C1A
|
D:HEM201
|
3.1
|
16.4
|
1.0
|
C1B
|
D:HEM201
|
3.1
|
18.5
|
1.0
|
C4D
|
D:HEM201
|
3.1
|
18.3
|
1.0
|
C4B
|
D:HEM201
|
3.1
|
16.0
|
1.0
|
CE1
|
D:HIS92
|
3.1
|
20.4
|
1.0
|
CD2
|
D:HIS92
|
3.1
|
16.6
|
1.0
|
CHD
|
D:HEM201
|
3.4
|
16.2
|
1.0
|
CHB
|
D:HEM201
|
3.4
|
18.8
|
1.0
|
CHA
|
D:HEM201
|
3.4
|
19.8
|
1.0
|
CHC
|
D:HEM201
|
3.4
|
16.0
|
1.0
|
ND1
|
D:HIS92
|
4.2
|
20.0
|
1.0
|
NE2
|
D:HIS63
|
4.3
|
21.3
|
1.0
|
C3A
|
D:HEM201
|
4.3
|
19.7
|
1.0
|
C3C
|
D:HEM201
|
4.3
|
18.2
|
1.0
|
C2C
|
D:HEM201
|
4.3
|
18.1
|
1.0
|
C2D
|
D:HEM201
|
4.3
|
21.3
|
1.0
|
C2A
|
D:HEM201
|
4.3
|
21.1
|
1.0
|
C2B
|
D:HEM201
|
4.3
|
18.8
|
1.0
|
C3D
|
D:HEM201
|
4.3
|
20.3
|
1.0
|
CG
|
D:HIS92
|
4.3
|
17.6
|
1.0
|
C3B
|
D:HEM201
|
4.3
|
18.5
|
1.0
|
CG2
|
D:VAL67
|
4.7
|
23.3
|
1.0
|
CE1
|
D:HIS63
|
4.7
|
23.0
|
1.0
|
|
Reference:
R.Pandian,
N.Shobana,
S.S.Sundaresan,
Y.Sayed,
M.N.Ponnuswamy.
Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution To Be Published.
Page generated: Wed Aug 7 20:33:33 2024
|