Iron in PDB 6ztq: Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A

Enzymatic activity of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A

All present enzymatic activity of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A:
7.1.1.2;

Other elements in 6ztq:

The structure of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A (pdb code 6ztq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A, PDB code: 6ztq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 6ztq

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Iron binding site 1 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:16.8
occ:1.00
FE1 B:SF4201 0.0 16.8 1.0
SG B:CYS129 2.3 14.9 1.0
S2 B:SF4201 2.3 16.8 1.0
S3 B:SF4201 2.3 16.8 1.0
S4 B:SF4201 2.3 16.8 1.0
FE4 B:SF4201 2.7 16.8 1.0
FE3 B:SF4201 2.7 16.8 1.0
FE2 B:SF4201 2.7 16.8 1.0
CB B:CYS129 3.2 14.9 1.0
OG1 B:THR101 3.9 16.3 1.0
S1 B:SF4201 3.9 16.8 1.0
N B:CYS129 4.2 14.9 1.0
CA B:CYS129 4.3 14.9 1.0
SG B:CYS159 4.5 14.7 1.0
CQ2 D:2MR85 4.6 16.3 1.0
NH2 D:2MR85 4.8 16.3 1.0
OG B:SER128 4.8 14.5 1.0
SG B:CYS65 4.9 16.5 1.0
SG B:CYS64 4.9 16.4 1.0

Iron binding site 2 out of 28 in 6ztq

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Iron binding site 2 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:16.8
occ:1.00
FE2 B:SF4201 0.0 16.8 1.0
S3 B:SF4201 2.3 16.8 1.0
S1 B:SF4201 2.3 16.8 1.0
S4 B:SF4201 2.3 16.8 1.0
SG B:CYS65 2.3 16.5 1.0
FE4 B:SF4201 2.7 16.8 1.0
FE1 B:SF4201 2.7 16.8 1.0
FE3 B:SF4201 2.7 16.8 1.0
CB B:CYS65 3.5 16.5 1.0
S2 B:SF4201 3.9 16.8 1.0
N B:CYS65 3.9 16.5 1.0
CA B:CYS65 4.2 16.5 1.0
CA B:PRO160 4.4 15.9 1.0
CA B:GLY127 4.5 15.7 1.0
CA B:CYS159 4.6 14.7 1.0
O B:GLY158 4.6 14.7 1.0
CB B:CYS64 4.7 16.4 1.0
SG B:CYS64 4.7 16.4 1.0
CB B:PRO160 4.8 15.9 1.0
CD B:PRO161 4.8 16.3 1.0
SG B:CYS129 4.8 14.9 1.0
SG B:CYS159 4.8 14.7 1.0
C B:CYS64 4.9 16.4 1.0
N B:PRO160 5.0 15.9 1.0
CB B:CYS129 5.0 14.9 1.0

Iron binding site 3 out of 28 in 6ztq

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Iron binding site 3 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:16.8
occ:1.00
FE3 B:SF4201 0.0 16.8 1.0
S2 B:SF4201 2.3 16.8 1.0
S4 B:SF4201 2.3 16.8 1.0
S1 B:SF4201 2.3 16.8 1.0
SG B:CYS64 2.3 16.4 1.0
FE4 B:SF4201 2.7 16.8 1.0
FE1 B:SF4201 2.7 16.8 1.0
FE2 B:SF4201 2.7 16.8 1.0
CB B:CYS64 3.1 16.4 1.0
CE1 D:HIS190 3.7 15.7 1.0
CQ2 D:2MR85 3.8 16.3 1.0
S3 B:SF4201 3.9 16.8 1.0
N B:CYS64 3.9 16.4 1.0
CA B:CYS64 4.1 16.4 1.0
N B:CYS65 4.3 16.5 1.0
ND1 D:HIS190 4.5 15.7 1.0
CG D:ARG105 4.6 15.0 1.0
C B:CYS64 4.6 16.4 1.0
NH2 D:2MR85 4.7 16.3 1.0
CB B:ALA63 4.7 17.1 1.0
NE2 D:HIS190 4.7 15.7 1.0
SG B:CYS159 4.8 14.7 1.0
SG B:CYS65 4.8 16.5 1.0
SG B:CYS129 4.8 14.9 1.0

Iron binding site 4 out of 28 in 6ztq

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Iron binding site 4 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:16.8
occ:1.00
FE4 B:SF4201 0.0 16.8 1.0
SG B:CYS159 2.2 14.7 1.0
S1 B:SF4201 2.3 16.8 1.0
S2 B:SF4201 2.3 16.8 1.0
S3 B:SF4201 2.3 16.8 1.0
FE1 B:SF4201 2.7 16.8 1.0
FE3 B:SF4201 2.7 16.8 1.0
FE2 B:SF4201 2.7 16.8 1.0
CB B:CYS159 3.2 14.7 1.0
CA B:CYS159 3.3 14.7 1.0
C B:CYS159 3.7 14.7 1.0
S4 B:SF4201 3.9 16.8 1.0
NE D:ARG105 4.0 15.0 1.0
ND1 D:HIS190 4.2 15.7 1.0
O B:CYS159 4.2 14.7 1.0
CE1 D:HIS190 4.2 15.7 1.0
N B:PRO160 4.2 15.9 1.0
CA B:PRO160 4.6 15.9 1.0
SG B:CYS129 4.6 14.9 1.0
NH2 D:ARG105 4.6 15.0 1.0
CD D:ARG105 4.6 15.0 1.0
N B:CYS159 4.6 14.7 1.0
O B:GLY158 4.7 14.7 1.0
CZ D:ARG105 4.7 15.0 1.0
SG B:CYS64 4.8 16.4 1.0
CG D:ARG105 4.8 15.0 1.0
OG B:SER128 4.8 14.5 1.0
SG B:CYS65 4.9 16.5 1.0
CD B:PRO160 5.0 15.9 1.0

Iron binding site 5 out of 28 in 6ztq

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Iron binding site 5 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:50.2
occ:1.00
FE1 E:FES301 0.0 50.2 1.0
S2 E:FES301 2.2 50.2 1.0
S1 E:FES301 2.2 50.2 1.0
SG E:CYS108 2.3 47.5 1.0
SG E:CYS103 2.3 46.6 1.0
FE2 E:FES301 2.7 50.2 1.0
CB E:CYS103 3.3 46.6 1.0
CB E:CYS108 3.3 47.5 1.0
CA E:CYS144 4.2 45.1 1.0
N E:CYS108 4.3 47.5 1.0
CA E:CYS148 4.4 48.5 1.0
CA E:CYS108 4.5 47.5 1.0
SG E:CYS144 4.6 45.1 1.0
SG E:CYS148 4.6 48.5 1.0
CB E:CYS144 4.6 45.1 1.0
N E:LEU145 4.7 46.6 1.0
O E:ALA151 4.7 50.4 1.0
CA E:CYS103 4.7 46.6 1.0
CB E:CYS148 4.7 48.5 1.0
CB E:THR105 4.8 44.3 1.0
C E:PRO107 4.9 46.5 1.0
N E:CYS144 4.9 45.1 1.0
C E:CYS144 4.9 45.1 1.0
N E:CYS148 5.0 48.5 1.0
C E:CYS103 5.0 46.6 1.0
SD E:MET153 5.0 50.7 1.0

Iron binding site 6 out of 28 in 6ztq

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Iron binding site 6 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:50.2
occ:1.00
FE2 E:FES301 0.0 50.2 1.0
S2 E:FES301 2.2 50.2 1.0
S1 E:FES301 2.2 50.2 1.0
SG E:CYS144 2.2 45.1 1.0
SG E:CYS148 2.2 48.5 1.0
FE1 E:FES301 2.7 50.2 1.0
CB E:CYS144 3.2 45.1 1.0
CB E:CYS148 3.2 48.5 1.0
CA E:CYS148 3.6 48.5 1.0
CA E:CYS144 3.6 45.1 1.0
N E:LEU145 3.7 46.6 1.0
N E:CYS148 3.7 48.5 1.0
N E:GLY146 4.0 47.1 1.0
C E:CYS144 4.1 45.1 1.0
SG E:CYS103 4.3 46.6 1.0
N F:GLY103 4.3 46.9 1.0
SG E:CYS108 4.4 47.5 1.0
N E:ALA147 4.4 48.9 1.0
C E:ALA147 4.5 48.9 1.0
CA F:PRO102 4.6 43.4 1.0
CA E:GLY146 4.7 47.1 1.0
CA E:LEU145 4.8 46.6 1.0
N E:CYS144 4.8 45.1 1.0
C E:LEU145 4.8 46.6 1.0
C E:GLY146 5.0 47.1 1.0

Iron binding site 7 out of 28 in 6ztq

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Iron binding site 7 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:29.6
occ:1.00
FE1 F:SF4502 0.0 29.6 1.0
SG F:CYS362 2.2 27.3 1.0
S3 F:SF4502 2.3 29.6 1.0
S4 F:SF4502 2.3 29.6 1.0
S2 F:SF4502 2.3 29.6 1.0
FE2 F:SF4502 2.7 29.6 1.0
FE4 F:SF4502 2.7 29.6 1.0
FE3 F:SF4502 2.7 29.6 1.0
CB F:CYS362 3.4 27.3 1.0
S1 F:SF4502 3.9 29.6 1.0
N F:CYS362 4.0 27.3 1.0
CB F:CYS365 4.0 28.8 1.0
CA F:CYS362 4.1 27.3 1.0
O F:CYS362 4.1 27.3 1.0
N F:ILE404 4.5 28.5 1.0
SG F:CYS365 4.5 28.8 1.0
C F:CYS362 4.5 27.3 1.0
SG F:CYS359 4.7 30.7 1.0
CB F:THR403 4.7 28.1 1.0
CG2 F:THR403 4.7 28.1 1.0
CB F:ILE404 4.8 28.5 1.0
N F:CYS405 4.8 31.5 1.0
SG F:CYS405 4.8 31.5 1.0
CG F:GLN361 4.9 28.8 1.0
CD1 F:ILE404 5.0 28.5 1.0

Iron binding site 8 out of 28 in 6ztq

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Iron binding site 8 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:29.6
occ:1.00
FE2 F:SF4502 0.0 29.6 1.0
SG F:CYS365 2.2 28.8 1.0
S1 F:SF4502 2.3 29.6 1.0
S3 F:SF4502 2.3 29.6 1.0
S4 F:SF4502 2.3 29.6 1.0
FE1 F:SF4502 2.7 29.6 1.0
FE4 F:SF4502 2.7 29.6 1.0
FE3 F:SF4502 2.7 29.6 1.0
CB F:CYS365 2.8 28.8 1.0
OG F:SER358 3.2 31.6 1.0
S2 F:SF4502 3.9 29.6 1.0
CD2 F:LEU407 4.2 34.2 1.0
CA F:CYS365 4.2 28.8 1.0
CB F:SER358 4.3 31.6 1.0
N F:CYS359 4.4 30.7 1.0
CA F:SER358 4.5 31.6 1.0
SG F:CYS362 4.5 27.3 1.0
C F:CYS365 4.6 28.8 1.0
CB F:LEU407 4.6 34.2 1.0
N F:GLY360 4.6 28.7 1.0
SG F:CYS405 4.7 31.5 1.0
SG F:CYS359 4.8 30.7 1.0
N F:CYS365 4.9 28.8 1.0
CG F:LEU407 4.9 34.2 1.0
C F:SER358 5.0 31.6 1.0

Iron binding site 9 out of 28 in 6ztq

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Iron binding site 9 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:29.6
occ:1.00
FE3 F:SF4502 0.0 29.6 1.0
SG F:CYS405 2.3 31.5 1.0
S4 F:SF4502 2.3 29.6 1.0
S2 F:SF4502 2.3 29.6 1.0
S1 F:SF4502 2.3 29.6 1.0
FE4 F:SF4502 2.7 29.6 1.0
FE2 F:SF4502 2.7 29.6 1.0
FE1 F:SF4502 2.7 29.6 1.0
CB F:CYS405 3.4 31.5 1.0
S3 F:SF4502 3.9 29.6 1.0
N F:CYS405 4.0 31.5 1.0
CA F:CYS405 4.1 31.5 1.0
CD1 F:ILE185 4.2 34.4 1.0
CB F:LEU407 4.2 34.2 1.0
O F:CYS405 4.3 31.5 1.0
C F:CYS405 4.3 31.5 1.0
CG F:PRO203 4.6 31.7 1.0
N F:LEU407 4.7 34.2 1.0
SG F:CYS365 4.8 28.8 1.0
SG F:CYS362 4.8 27.3 1.0
SG F:CYS359 4.8 30.7 1.0
CD F:PRO203 4.8 31.7 1.0

Iron binding site 10 out of 28 in 6ztq

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Iron binding site 10 out of 28 in the Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Respiratory Complex I From Mus Musculus Inhibited By Piericidin A at 3.0 A within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:29.6
occ:1.00
FE4 F:SF4502 0.0 29.6 1.0
SG F:CYS359 2.3 30.7 1.0
S3 F:SF4502 2.3 29.6 1.0
S1 F:SF4502 2.3 29.6 1.0
S2 F:SF4502 2.3 29.6 1.0
FE2 F:SF4502 2.7 29.6 1.0
FE3 F:SF4502 2.7 29.6 1.0
FE1 F:SF4502 2.7 29.6 1.0
CB F:CYS359 3.3 30.7 1.0
N F:GLY360 3.6 28.7 1.0
N F:CYS359 3.8 30.7 1.0
S4 F:SF4502 3.9 29.6 1.0
CA F:CYS359 4.0 30.7 1.0
N F:GLN361 4.1 28.8 1.0
C F:CYS359 4.2 30.7 1.0
CG F:GLN361 4.4 28.8 1.0
OG F:SER358 4.5 31.6 1.0
CD F:PRO203 4.5 31.7 1.0
CA F:GLY360 4.5 28.7 1.0
N F:CYS362 4.7 27.3 1.0
C F:GLY360 4.7 28.7 1.0
SG F:CYS365 4.8 28.8 1.0
SG F:CYS405 4.8 31.5 1.0
SG F:CYS362 4.8 27.3 1.0
CD1 F:ILE185 4.9 34.4 1.0
C F:SER358 5.0 31.6 1.0
NE2 F:GLN361 5.0 28.8 1.0

Reference:

H.R.Bridges, J.G.Fedor, J.N.Blaza, A.Di Luca, A.Jussupow, O.D.Jarman, J.J.Wright, A.A.Agip, A.P.Gamiz-Hernandez, M.M.Roessler, V.R.I.Kaila, J.Hirst. Structure of Inhibitor-Bound Mammalian Complex I. Nat Commun V. 11 5261 2020.
ISSN: ESSN 2041-1723
PubMed: 33067417
DOI: 10.1038/S41467-020-18950-3
Page generated: Sun Dec 13 18:26:42 2020

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