Iron in PDB 6ztw: Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
Enzymatic activity of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
All present enzymatic activity of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized):
1.11.1.6;
Protein crystallography data
The structure of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized), PDB code: 6ztw
was solved by
M.Grzechowiak,
B.Sekula,
M.Ruszkowski,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
78.25 /
1.84
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
121.188,
168.071,
137.982,
90.00,
105.24,
90.00
|
|
R / Rfree (%)
|
14.4 /
18.4
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
(pdb code 6ztw). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized), PDB code: 6ztw:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 6ztw
Go back to
Iron Binding Sites List in 6ztw
Iron binding site 1 out
of 8 in the Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:14.4
occ:1.00
|
FE
|
A:HDD801
|
0.0
|
14.4
|
1.0
|
|
ND
|
A:HDD801
|
1.9
|
12.0
|
1.0
|
|
OH
|
A:TYR415
|
2.0
|
14.2
|
1.0
|
|
NA
|
A:HDD801
|
2.1
|
15.3
|
1.0
|
|
NC
|
A:HDD801
|
2.1
|
13.6
|
1.0
|
|
NB
|
A:HDD801
|
2.1
|
13.8
|
1.0
|
|
C1D
|
A:HDD801
|
2.9
|
10.7
|
1.0
|
|
C4D
|
A:HDD801
|
3.0
|
13.0
|
1.0
|
|
C1A
|
A:HDD801
|
3.0
|
12.9
|
1.0
|
|
C4C
|
A:HDD801
|
3.0
|
13.9
|
1.0
|
|
CZ
|
A:TYR415
|
3.1
|
13.3
|
1.0
|
|
C4B
|
A:HDD801
|
3.1
|
14.2
|
1.0
|
|
C4A
|
A:HDD801
|
3.1
|
14.5
|
1.0
|
|
C1C
|
A:HDD801
|
3.1
|
15.2
|
1.0
|
|
O
|
A:HOH1371
|
3.1
|
27.6
|
1.0
|
|
C1B
|
A:HDD801
|
3.1
|
12.9
|
1.0
|
|
CHD
|
A:HDD801
|
3.3
|
13.7
|
1.0
|
|
CHA
|
A:HDD801
|
3.3
|
12.9
|
1.0
|
|
CHC
|
A:HDD801
|
3.5
|
13.7
|
1.0
|
|
CHB
|
A:HDD801
|
3.5
|
15.9
|
1.0
|
|
CE2
|
A:TYR415
|
3.8
|
16.7
|
1.0
|
|
CE1
|
A:TYR415
|
4.0
|
14.7
|
1.0
|
|
NE
|
A:ARG411
|
4.2
|
13.3
|
1.0
|
|
NH2
|
A:ARG411
|
4.2
|
15.1
|
1.0
|
|
C2D
|
A:HDD801
|
4.3
|
17.2
|
1.0
|
|
C3D
|
A:HDD801
|
4.3
|
18.9
|
1.0
|
|
C2A
|
A:HDD801
|
4.3
|
10.7
|
1.0
|
|
C3A
|
A:HDD801
|
4.3
|
11.3
|
1.0
|
|
C3C
|
A:HDD801
|
4.3
|
13.7
|
1.0
|
|
C3B
|
A:HDD801
|
4.4
|
11.1
|
1.0
|
|
C2B
|
A:HDD801
|
4.4
|
14.3
|
1.0
|
|
C2C
|
A:HDD801
|
4.4
|
14.5
|
1.0
|
|
O
|
A:HOH925
|
4.4
|
20.1
|
1.0
|
|
CZ
|
A:ARG411
|
4.6
|
15.2
|
1.0
|
|
CG2
|
A:VAL127
|
4.6
|
16.3
|
1.0
|
|
CZ
|
A:PHE214
|
4.6
|
12.9
|
1.0
|
|
NE2
|
A:HIS128
|
4.7
|
12.5
|
1.0
|
|
CD2
|
A:HIS128
|
4.7
|
12.3
|
1.0
|
|
Iron binding site 2 out
of 8 in 6ztw
Go back to
Iron Binding Sites List in 6ztw
Iron binding site 2 out
of 8 in the Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe801
b:15.2
occ:1.00
|
FE
|
B:HDD801
|
0.0
|
15.2
|
1.0
|
|
ND
|
B:HDD801
|
1.9
|
12.9
|
1.0
|
|
OH
|
B:TYR415
|
2.0
|
16.5
|
1.0
|
|
NA
|
B:HDD801
|
2.1
|
12.6
|
1.0
|
|
NC
|
B:HDD801
|
2.1
|
17.1
|
1.0
|
|
NB
|
B:HDD801
|
2.1
|
14.1
|
1.0
|
|
O
|
B:HOH1345
|
2.9
|
32.7
|
1.0
|
|
C1D
|
B:HDD801
|
2.9
|
14.8
|
1.0
|
|
C4D
|
B:HDD801
|
3.0
|
17.9
|
1.0
|
|
C1A
|
B:HDD801
|
3.0
|
11.2
|
1.0
|
|
C4C
|
B:HDD801
|
3.0
|
12.1
|
1.0
|
|
CZ
|
B:TYR415
|
3.1
|
15.8
|
1.0
|
|
C4B
|
B:HDD801
|
3.1
|
17.3
|
1.0
|
|
C4A
|
B:HDD801
|
3.1
|
11.2
|
1.0
|
|
C1C
|
B:HDD801
|
3.1
|
11.8
|
1.0
|
|
C1B
|
B:HDD801
|
3.1
|
12.2
|
1.0
|
|
CHD
|
B:HDD801
|
3.3
|
13.9
|
1.0
|
|
CHA
|
B:HDD801
|
3.3
|
17.3
|
1.0
|
|
CHC
|
B:HDD801
|
3.5
|
13.5
|
1.0
|
|
CHB
|
B:HDD801
|
3.5
|
9.3
|
1.0
|
|
CE2
|
B:TYR415
|
3.8
|
12.3
|
1.0
|
|
CE1
|
B:TYR415
|
4.0
|
18.4
|
1.0
|
|
NE
|
B:ARG411
|
4.2
|
15.4
|
1.0
|
|
C3D
|
B:HDD801
|
4.3
|
20.2
|
1.0
|
|
C2D
|
B:HDD801
|
4.3
|
20.2
|
1.0
|
|
NH2
|
B:ARG411
|
4.3
|
13.4
|
1.0
|
|
C3C
|
B:HDD801
|
4.4
|
15.5
|
1.0
|
|
C2A
|
B:HDD801
|
4.4
|
11.4
|
1.0
|
|
C3A
|
B:HDD801
|
4.4
|
10.0
|
1.0
|
|
C3B
|
B:HDD801
|
4.4
|
16.9
|
1.0
|
|
C2B
|
B:HDD801
|
4.4
|
11.9
|
1.0
|
|
O
|
B:HOH1312
|
4.4
|
19.4
|
1.0
|
|
C2C
|
B:HDD801
|
4.4
|
14.5
|
1.0
|
|
CG2
|
B:VAL127
|
4.5
|
10.9
|
1.0
|
|
CZ
|
B:ARG411
|
4.6
|
15.4
|
1.0
|
|
CZ
|
B:PHE214
|
4.7
|
17.2
|
1.0
|
|
NE2
|
B:HIS128
|
4.7
|
14.7
|
1.0
|
|
CD2
|
B:HIS128
|
4.7
|
14.9
|
1.0
|
|
Iron binding site 3 out
of 8 in 6ztw
Go back to
Iron Binding Sites List in 6ztw
Iron binding site 3 out
of 8 in the Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe801
b:14.8
occ:1.00
|
FE
|
C:HDD801
|
0.0
|
14.8
|
1.0
|
|
ND
|
C:HDD801
|
1.9
|
17.0
|
1.0
|
|
OH
|
C:TYR415
|
2.0
|
17.1
|
1.0
|
|
NA
|
C:HDD801
|
2.1
|
13.3
|
1.0
|
|
NC
|
C:HDD801
|
2.1
|
15.1
|
1.0
|
|
NB
|
C:HDD801
|
2.1
|
14.9
|
1.0
|
|
O
|
C:HOH1293
|
2.7
|
29.2
|
1.0
|
|
C1D
|
C:HDD801
|
2.9
|
11.2
|
1.0
|
|
C4D
|
C:HDD801
|
3.0
|
17.8
|
1.0
|
|
CZ
|
C:TYR415
|
3.0
|
15.6
|
1.0
|
|
C4C
|
C:HDD801
|
3.1
|
18.0
|
1.0
|
|
C1A
|
C:HDD801
|
3.1
|
13.5
|
1.0
|
|
C4A
|
C:HDD801
|
3.1
|
13.4
|
1.0
|
|
C4B
|
C:HDD801
|
3.1
|
14.1
|
1.0
|
|
C1B
|
C:HDD801
|
3.1
|
13.8
|
1.0
|
|
C1C
|
C:HDD801
|
3.1
|
14.7
|
1.0
|
|
CHD
|
C:HDD801
|
3.4
|
12.2
|
1.0
|
|
CHA
|
C:HDD801
|
3.4
|
17.6
|
1.0
|
|
CHB
|
C:HDD801
|
3.5
|
7.9
|
1.0
|
|
CHC
|
C:HDD801
|
3.5
|
9.9
|
1.0
|
|
CE2
|
C:TYR415
|
3.6
|
16.9
|
1.0
|
|
CE1
|
C:TYR415
|
4.0
|
14.9
|
1.0
|
|
NE
|
C:ARG411
|
4.2
|
12.7
|
1.0
|
|
NH2
|
C:ARG411
|
4.3
|
14.0
|
1.0
|
|
C2D
|
C:HDD801
|
4.3
|
17.8
|
1.0
|
|
C3D
|
C:HDD801
|
4.3
|
16.8
|
1.0
|
|
C3C
|
C:HDD801
|
4.4
|
15.1
|
1.0
|
|
C3A
|
C:HDD801
|
4.4
|
12.8
|
1.0
|
|
C2B
|
C:HDD801
|
4.4
|
15.9
|
1.0
|
|
C3B
|
C:HDD801
|
4.4
|
16.5
|
1.0
|
|
C2A
|
C:HDD801
|
4.4
|
14.0
|
1.0
|
|
C2C
|
C:HDD801
|
4.4
|
11.8
|
1.0
|
|
O
|
C:HOH1136
|
4.5
|
19.2
|
1.0
|
|
CG2
|
C:VAL127
|
4.6
|
11.8
|
1.0
|
|
CZ
|
C:ARG411
|
4.7
|
16.2
|
1.0
|
|
CZ
|
C:PHE214
|
4.7
|
16.6
|
1.0
|
|
NE2
|
C:HIS128
|
4.7
|
15.9
|
1.0
|
|
CD2
|
C:HIS128
|
4.7
|
14.0
|
1.0
|
|
CD2
|
C:TYR415
|
4.9
|
13.4
|
1.0
|
|
Iron binding site 4 out
of 8 in 6ztw
Go back to
Iron Binding Sites List in 6ztw
Iron binding site 4 out
of 8 in the Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe801
b:14.2
occ:1.00
|
FE
|
D:HDD801
|
0.0
|
14.2
|
1.0
|
|
ND
|
D:HDD801
|
1.9
|
11.8
|
1.0
|
|
OH
|
D:TYR415
|
2.0
|
16.1
|
1.0
|
|
NA
|
D:HDD801
|
2.1
|
12.6
|
1.0
|
|
NC
|
D:HDD801
|
2.1
|
15.8
|
1.0
|
|
NB
|
D:HDD801
|
2.1
|
14.9
|
1.0
|
|
O
|
D:HOH1396
|
2.9
|
27.4
|
1.0
|
|
C1D
|
D:HDD801
|
3.0
|
12.1
|
1.0
|
|
C4D
|
D:HDD801
|
3.0
|
14.5
|
1.0
|
|
C1A
|
D:HDD801
|
3.0
|
9.4
|
1.0
|
|
CZ
|
D:TYR415
|
3.1
|
16.9
|
1.0
|
|
C4C
|
D:HDD801
|
3.1
|
10.9
|
1.0
|
|
C4B
|
D:HDD801
|
3.1
|
13.5
|
1.0
|
|
C4A
|
D:HDD801
|
3.1
|
8.0
|
1.0
|
|
C1C
|
D:HDD801
|
3.1
|
14.8
|
1.0
|
|
C1B
|
D:HDD801
|
3.1
|
8.9
|
1.0
|
|
CHA
|
D:HDD801
|
3.3
|
11.9
|
1.0
|
|
CHD
|
D:HDD801
|
3.4
|
8.8
|
1.0
|
|
CHC
|
D:HDD801
|
3.5
|
10.4
|
1.0
|
|
CHB
|
D:HDD801
|
3.5
|
8.6
|
1.0
|
|
CE2
|
D:TYR415
|
3.7
|
15.1
|
1.0
|
|
CE1
|
D:TYR415
|
4.0
|
9.7
|
1.0
|
|
NE
|
D:ARG411
|
4.2
|
14.1
|
1.0
|
|
C2D
|
D:HDD801
|
4.3
|
16.5
|
1.0
|
|
C3D
|
D:HDD801
|
4.3
|
15.6
|
1.0
|
|
NH2
|
D:ARG411
|
4.3
|
11.1
|
1.0
|
|
C2A
|
D:HDD801
|
4.4
|
9.0
|
1.0
|
|
C3C
|
D:HDD801
|
4.4
|
14.4
|
1.0
|
|
C3A
|
D:HDD801
|
4.4
|
10.5
|
1.0
|
|
C3B
|
D:HDD801
|
4.4
|
11.4
|
1.0
|
|
C2B
|
D:HDD801
|
4.4
|
8.3
|
1.0
|
|
C2C
|
D:HDD801
|
4.4
|
15.0
|
1.0
|
|
O
|
D:HOH1149
|
4.4
|
17.8
|
1.0
|
|
CG2
|
D:VAL127
|
4.6
|
10.8
|
1.0
|
|
CZ
|
D:PHE214
|
4.6
|
11.8
|
1.0
|
|
CZ
|
D:ARG411
|
4.7
|
14.4
|
1.0
|
|
CD2
|
D:HIS128
|
4.7
|
11.3
|
1.0
|
|
NE2
|
D:HIS128
|
4.8
|
13.4
|
1.0
|
|
Iron binding site 5 out
of 8 in 6ztw
Go back to
Iron Binding Sites List in 6ztw
Iron binding site 5 out
of 8 in the Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe801
b:14.9
occ:1.00
|
FE
|
E:HDD801
|
0.0
|
14.9
|
1.0
|
|
ND
|
E:HDD801
|
1.9
|
12.4
|
1.0
|
|
OH
|
E:TYR415
|
2.0
|
14.8
|
1.0
|
|
NC
|
E:HDD801
|
2.1
|
14.8
|
1.0
|
|
NA
|
E:HDD801
|
2.1
|
12.2
|
1.0
|
|
NB
|
E:HDD801
|
2.1
|
15.7
|
1.0
|
|
O
|
E:HOH1350
|
2.9
|
31.4
|
1.0
|
|
C1D
|
E:HDD801
|
2.9
|
13.2
|
1.0
|
|
C4D
|
E:HDD801
|
3.0
|
13.8
|
1.0
|
|
C4C
|
E:HDD801
|
3.0
|
11.2
|
1.0
|
|
C1A
|
E:HDD801
|
3.0
|
12.3
|
1.0
|
|
CZ
|
E:TYR415
|
3.1
|
14.4
|
1.0
|
|
C4B
|
E:HDD801
|
3.1
|
12.0
|
1.0
|
|
C4A
|
E:HDD801
|
3.1
|
12.7
|
1.0
|
|
C1C
|
E:HDD801
|
3.1
|
13.2
|
1.0
|
|
C1B
|
E:HDD801
|
3.1
|
11.8
|
1.0
|
|
CHA
|
E:HDD801
|
3.3
|
13.3
|
1.0
|
|
CHD
|
E:HDD801
|
3.3
|
9.8
|
1.0
|
|
CHC
|
E:HDD801
|
3.5
|
12.5
|
1.0
|
|
CHB
|
E:HDD801
|
3.5
|
11.2
|
1.0
|
|
CE2
|
E:TYR415
|
3.7
|
14.8
|
1.0
|
|
CE1
|
E:TYR415
|
4.0
|
14.3
|
1.0
|
|
NE
|
E:ARG411
|
4.2
|
14.5
|
1.0
|
|
NH2
|
E:ARG411
|
4.3
|
15.0
|
1.0
|
|
O
|
E:HOH1019
|
4.3
|
23.4
|
1.0
|
|
C3D
|
E:HDD801
|
4.3
|
15.4
|
1.0
|
|
C2D
|
E:HDD801
|
4.3
|
15.9
|
1.0
|
|
C3C
|
E:HDD801
|
4.3
|
13.8
|
1.0
|
|
C2A
|
E:HDD801
|
4.4
|
13.2
|
1.0
|
|
C3A
|
E:HDD801
|
4.4
|
13.8
|
1.0
|
|
C3B
|
E:HDD801
|
4.4
|
13.2
|
1.0
|
|
C2B
|
E:HDD801
|
4.4
|
15.8
|
1.0
|
|
C2C
|
E:HDD801
|
4.4
|
12.4
|
1.0
|
|
CZ
|
E:PHE214
|
4.6
|
15.7
|
1.0
|
|
CZ
|
E:ARG411
|
4.6
|
20.5
|
1.0
|
|
CG2
|
E:VAL127
|
4.6
|
17.4
|
1.0
|
|
CD2
|
E:HIS128
|
4.8
|
13.7
|
1.0
|
|
NE2
|
E:HIS128
|
4.8
|
16.2
|
1.0
|
|
CD2
|
E:TYR415
|
5.0
|
15.6
|
1.0
|
|
Iron binding site 6 out
of 8 in 6ztw
Go back to
Iron Binding Sites List in 6ztw
Iron binding site 6 out
of 8 in the Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe801
b:16.5
occ:1.00
|
FE
|
F:HDD801
|
0.0
|
16.5
|
1.0
|
|
ND
|
F:HDD801
|
1.9
|
15.4
|
1.0
|
|
OH
|
F:TYR415
|
2.0
|
16.8
|
1.0
|
|
NC
|
F:HDD801
|
2.1
|
18.0
|
1.0
|
|
NA
|
F:HDD801
|
2.1
|
15.3
|
1.0
|
|
NB
|
F:HDD801
|
2.1
|
14.0
|
1.0
|
|
O
|
F:HOH1351
|
2.8
|
31.6
|
1.0
|
|
C1D
|
F:HDD801
|
2.9
|
18.5
|
1.0
|
|
C4D
|
F:HDD801
|
3.0
|
15.3
|
1.0
|
|
C4C
|
F:HDD801
|
3.0
|
15.8
|
1.0
|
|
C1A
|
F:HDD801
|
3.0
|
14.6
|
1.0
|
|
CZ
|
F:TYR415
|
3.1
|
15.9
|
1.0
|
|
C4A
|
F:HDD801
|
3.1
|
14.6
|
1.0
|
|
C4B
|
F:HDD801
|
3.1
|
17.0
|
1.0
|
|
C1C
|
F:HDD801
|
3.1
|
17.6
|
1.0
|
|
C1B
|
F:HDD801
|
3.1
|
14.2
|
1.0
|
|
CHD
|
F:HDD801
|
3.3
|
14.9
|
1.0
|
|
CHA
|
F:HDD801
|
3.3
|
13.1
|
1.0
|
|
CHC
|
F:HDD801
|
3.5
|
12.2
|
1.0
|
|
CHB
|
F:HDD801
|
3.5
|
14.7
|
1.0
|
|
CE2
|
F:TYR415
|
3.8
|
15.9
|
1.0
|
|
CE1
|
F:TYR415
|
4.0
|
13.8
|
1.0
|
|
NH2
|
F:ARG411
|
4.3
|
13.3
|
1.0
|
|
NE
|
F:ARG411
|
4.3
|
17.3
|
1.0
|
|
C2D
|
F:HDD801
|
4.3
|
18.6
|
1.0
|
|
C3D
|
F:HDD801
|
4.3
|
17.4
|
1.0
|
|
O
|
F:HOH1034
|
4.3
|
15.7
|
1.0
|
|
C3C
|
F:HDD801
|
4.3
|
16.4
|
1.0
|
|
C3A
|
F:HDD801
|
4.4
|
14.5
|
1.0
|
|
C2A
|
F:HDD801
|
4.4
|
15.4
|
1.0
|
|
C3B
|
F:HDD801
|
4.4
|
17.5
|
1.0
|
|
C2B
|
F:HDD801
|
4.4
|
18.8
|
1.0
|
|
C2C
|
F:HDD801
|
4.4
|
17.3
|
1.0
|
|
CG2
|
F:VAL127
|
4.6
|
13.2
|
1.0
|
|
CD2
|
F:HIS128
|
4.6
|
13.9
|
1.0
|
|
NE2
|
F:HIS128
|
4.6
|
16.5
|
1.0
|
|
CZ
|
F:ARG411
|
4.7
|
20.3
|
1.0
|
|
CZ
|
F:PHE214
|
4.7
|
16.7
|
1.0
|
|
Iron binding site 7 out
of 8 in 6ztw
Go back to
Iron Binding Sites List in 6ztw
Iron binding site 7 out
of 8 in the Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe801
b:16.3
occ:1.00
|
FE
|
G:HDD801
|
0.0
|
16.3
|
1.0
|
|
ND
|
G:HDD801
|
1.9
|
12.4
|
1.0
|
|
OH
|
G:TYR415
|
2.0
|
14.6
|
1.0
|
|
NC
|
G:HDD801
|
2.1
|
14.2
|
1.0
|
|
NA
|
G:HDD801
|
2.1
|
14.4
|
1.0
|
|
NB
|
G:HDD801
|
2.1
|
16.5
|
1.0
|
|
O
|
G:HOH1304
|
2.8
|
29.1
|
1.0
|
|
C1D
|
G:HDD801
|
2.9
|
12.5
|
1.0
|
|
C4D
|
G:HDD801
|
3.0
|
12.3
|
1.0
|
|
C4C
|
G:HDD801
|
3.0
|
12.2
|
1.0
|
|
CZ
|
G:TYR415
|
3.0
|
14.9
|
1.0
|
|
C1A
|
G:HDD801
|
3.1
|
11.1
|
1.0
|
|
C4A
|
G:HDD801
|
3.1
|
15.6
|
1.0
|
|
C1B
|
G:HDD801
|
3.1
|
11.5
|
1.0
|
|
C4B
|
G:HDD801
|
3.1
|
12.9
|
1.0
|
|
C1C
|
G:HDD801
|
3.1
|
15.1
|
1.0
|
|
CHD
|
G:HDD801
|
3.3
|
11.5
|
1.0
|
|
CHA
|
G:HDD801
|
3.4
|
8.4
|
1.0
|
|
CHB
|
G:HDD801
|
3.5
|
10.1
|
1.0
|
|
CHC
|
G:HDD801
|
3.5
|
13.6
|
1.0
|
|
CE2
|
G:TYR415
|
3.7
|
15.3
|
1.0
|
|
CE1
|
G:TYR415
|
4.0
|
11.4
|
1.0
|
|
NE
|
G:ARG411
|
4.2
|
17.2
|
1.0
|
|
NH2
|
G:ARG411
|
4.3
|
12.6
|
1.0
|
|
C2D
|
G:HDD801
|
4.3
|
17.4
|
1.0
|
|
C3D
|
G:HDD801
|
4.3
|
15.7
|
1.0
|
|
C3C
|
G:HDD801
|
4.3
|
13.6
|
1.0
|
|
C2A
|
G:HDD801
|
4.4
|
14.9
|
1.0
|
|
C3A
|
G:HDD801
|
4.4
|
15.7
|
1.0
|
|
C2B
|
G:HDD801
|
4.4
|
12.4
|
1.0
|
|
C3B
|
G:HDD801
|
4.4
|
13.0
|
1.0
|
|
C2C
|
G:HDD801
|
4.4
|
10.2
|
1.0
|
|
CG2
|
G:VAL127
|
4.5
|
16.3
|
1.0
|
|
O
|
G:HOH1035
|
4.5
|
19.1
|
1.0
|
|
CZ
|
G:ARG411
|
4.6
|
14.4
|
1.0
|
|
CD2
|
G:HIS128
|
4.7
|
14.1
|
1.0
|
|
CZ
|
G:PHE214
|
4.7
|
17.7
|
1.0
|
|
NE2
|
G:HIS128
|
4.7
|
14.1
|
1.0
|
|
CD2
|
G:TYR415
|
5.0
|
14.1
|
1.0
|
|
Iron binding site 8 out
of 8 in 6ztw
Go back to
Iron Binding Sites List in 6ztw
Iron binding site 8 out
of 8 in the Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Catalase Hpii From Escherichia Coli (Serendipitously Crystallized) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe801
b:15.9
occ:1.00
|
FE
|
H:HDD801
|
0.0
|
15.9
|
1.0
|
|
ND
|
H:HDD801
|
1.9
|
17.1
|
1.0
|
|
OH
|
H:TYR415
|
2.0
|
18.1
|
1.0
|
|
NA
|
H:HDD801
|
2.1
|
13.3
|
1.0
|
|
NC
|
H:HDD801
|
2.1
|
15.9
|
1.0
|
|
NB
|
H:HDD801
|
2.1
|
15.1
|
1.0
|
|
O
|
H:HOH1307
|
2.8
|
30.2
|
1.0
|
|
C1D
|
H:HDD801
|
2.9
|
10.9
|
1.0
|
|
C4D
|
H:HDD801
|
3.0
|
16.1
|
1.0
|
|
C4C
|
H:HDD801
|
3.0
|
12.5
|
1.0
|
|
CZ
|
H:TYR415
|
3.1
|
14.8
|
1.0
|
|
C1A
|
H:HDD801
|
3.1
|
16.0
|
1.0
|
|
C4B
|
H:HDD801
|
3.1
|
17.8
|
1.0
|
|
C4A
|
H:HDD801
|
3.1
|
15.5
|
1.0
|
|
C1B
|
H:HDD801
|
3.1
|
15.3
|
1.0
|
|
C1C
|
H:HDD801
|
3.1
|
14.4
|
1.0
|
|
CHD
|
H:HDD801
|
3.3
|
14.6
|
1.0
|
|
CHA
|
H:HDD801
|
3.4
|
14.3
|
1.0
|
|
CHB
|
H:HDD801
|
3.5
|
9.4
|
1.0
|
|
CHC
|
H:HDD801
|
3.5
|
14.4
|
1.0
|
|
CE2
|
H:TYR415
|
3.7
|
11.2
|
1.0
|
|
CE1
|
H:TYR415
|
4.0
|
12.3
|
1.0
|
|
NE
|
H:ARG411
|
4.2
|
13.0
|
1.0
|
|
C2D
|
H:HDD801
|
4.3
|
15.4
|
1.0
|
|
O
|
H:HOH970
|
4.3
|
18.4
|
1.0
|
|
C3D
|
H:HDD801
|
4.3
|
14.9
|
1.0
|
|
NH2
|
H:ARG411
|
4.3
|
16.9
|
1.0
|
|
C3C
|
H:HDD801
|
4.4
|
14.7
|
1.0
|
|
C2A
|
H:HDD801
|
4.4
|
14.6
|
1.0
|
|
C2B
|
H:HDD801
|
4.4
|
12.9
|
1.0
|
|
C3A
|
H:HDD801
|
4.4
|
12.9
|
1.0
|
|
C3B
|
H:HDD801
|
4.4
|
16.3
|
1.0
|
|
C2C
|
H:HDD801
|
4.4
|
14.4
|
1.0
|
|
CG2
|
H:VAL127
|
4.6
|
12.5
|
1.0
|
|
CZ
|
H:ARG411
|
4.6
|
17.4
|
1.0
|
|
CZ
|
H:PHE214
|
4.7
|
12.4
|
1.0
|
|
NE2
|
H:HIS128
|
4.7
|
17.2
|
1.0
|
|
CD2
|
H:HIS128
|
4.8
|
14.7
|
1.0
|
|
Reference:
M.Grzechowiak,
B.Sekula,
M.Jaskolski,
M.Ruszkowski.
Serendipitous Crystallization of E. Coli Hpii Catalase, A Sequel to "the Tale Usually Not Told" To Be Published.
Page generated: Wed Aug 7 20:54:43 2024
|
