Iron in PDB 6zu9: Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Other elements in 6zu9:
The structure of Structure of A Yeast ABCE1-Bound 48S Initiation Complex also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
(pdb code 6zu9). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Structure of A Yeast ABCE1-Bound 48S Initiation Complex, PDB code: 6zu9:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 6zu9
Go back to
Iron Binding Sites List in 6zu9
Iron binding site 1 out
of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Fe705
b:17.7
occ:1.00
|
FE1
|
k:SF4705
|
0.0
|
17.7
|
1.0
|
S4
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
S2
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
S3
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
FE2
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
FE3
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
FE4
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
CB
|
k:CYS29
|
3.3
|
0.9
|
1.0
|
CA
|
k:CYS29
|
3.7
|
0.9
|
1.0
|
S1
|
k:SF4705
|
3.9
|
17.7
|
1.0
|
CB
|
k:CYS61
|
4.3
|
0.8
|
1.0
|
C
|
k:CYS29
|
4.5
|
0.9
|
1.0
|
N
|
k:PRO30
|
4.5
|
0.9
|
1.0
|
N
|
k:CYS29
|
4.8
|
0.9
|
1.0
|
CB
|
k:CYS38
|
4.8
|
0.8
|
1.0
|
|
Iron binding site 2 out
of 8 in 6zu9
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Iron Binding Sites List in 6zu9
Iron binding site 2 out
of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Fe705
b:17.7
occ:1.00
|
FE2
|
k:SF4705
|
0.0
|
17.7
|
1.0
|
S3
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
S4
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
S1
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
FE1
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
FE3
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
FE4
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
CB
|
k:CYS55
|
3.8
|
0.8
|
1.0
|
S2
|
k:SF4705
|
3.9
|
17.7
|
1.0
|
CA
|
k:CYS55
|
4.0
|
0.8
|
1.0
|
N
|
k:ILE56
|
4.1
|
0.8
|
1.0
|
CB
|
k:ALA9
|
4.3
|
0.7
|
1.0
|
N
|
k:GLY57
|
4.4
|
0.8
|
1.0
|
C
|
k:CYS55
|
4.4
|
0.8
|
1.0
|
CB
|
k:CYS38
|
4.8
|
0.8
|
1.0
|
|
Iron binding site 3 out
of 8 in 6zu9
Go back to
Iron Binding Sites List in 6zu9
Iron binding site 3 out
of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Fe705
b:17.7
occ:1.00
|
FE3
|
k:SF4705
|
0.0
|
17.7
|
1.0
|
S1
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
S2
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
S4
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
FE1
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
FE4
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
FE2
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
CB
|
k:CYS61
|
3.2
|
0.8
|
1.0
|
N
|
k:CYS61
|
3.8
|
0.8
|
1.0
|
S3
|
k:SF4705
|
3.9
|
17.7
|
1.0
|
CB
|
k:ALA9
|
4.1
|
0.7
|
1.0
|
CA
|
k:CYS61
|
4.1
|
0.8
|
1.0
|
N
|
k:GLY59
|
4.2
|
0.8
|
1.0
|
N
|
k:ILE60
|
4.5
|
0.8
|
1.0
|
CA
|
k:GLY59
|
4.7
|
0.8
|
1.0
|
C
|
k:GLY59
|
4.8
|
0.8
|
1.0
|
N
|
k:CYS58
|
4.9
|
0.8
|
1.0
|
C
|
k:ILE60
|
4.9
|
0.8
|
1.0
|
|
Iron binding site 4 out
of 8 in 6zu9
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Iron Binding Sites List in 6zu9
Iron binding site 4 out
of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Fe705
b:17.7
occ:1.00
|
FE4
|
k:SF4705
|
0.0
|
17.7
|
1.0
|
S1
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
S3
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
S2
|
k:SF4705
|
2.3
|
17.7
|
1.0
|
FE3
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
FE2
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
FE1
|
k:SF4705
|
2.7
|
17.7
|
1.0
|
N
|
k:CYS58
|
3.5
|
0.8
|
1.0
|
CB
|
k:CYS58
|
3.8
|
0.8
|
1.0
|
S4
|
k:SF4705
|
3.9
|
17.7
|
1.0
|
CA
|
k:CYS58
|
4.1
|
0.8
|
1.0
|
N
|
k:GLY59
|
4.2
|
0.8
|
1.0
|
N
|
k:GLY57
|
4.2
|
0.8
|
1.0
|
C
|
k:CYS58
|
4.5
|
0.8
|
1.0
|
C
|
k:GLY57
|
4.6
|
0.8
|
1.0
|
N
|
k:ILE56
|
4.6
|
0.8
|
1.0
|
CA
|
k:GLY57
|
4.8
|
0.8
|
1.0
|
C
|
k:ILE56
|
4.9
|
0.8
|
1.0
|
N
|
k:ILE60
|
4.9
|
0.8
|
1.0
|
|
Iron binding site 5 out
of 8 in 6zu9
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Iron Binding Sites List in 6zu9
Iron binding site 5 out
of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Fe706
b:23.9
occ:1.00
|
FE1
|
k:SF4706
|
0.0
|
23.9
|
1.0
|
S3
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
S4
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
S2
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
FE2
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
FE4
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
FE3
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
CB
|
k:ALA48
|
3.5
|
0.8
|
1.0
|
S1
|
k:SF4706
|
3.9
|
23.9
|
1.0
|
CB
|
k:PRO18
|
4.2
|
0.8
|
1.0
|
N
|
k:ALA48
|
4.2
|
0.8
|
1.0
|
CA
|
k:ALA48
|
4.4
|
0.8
|
1.0
|
O
|
k:CYS16
|
4.5
|
0.8
|
1.0
|
CB
|
k:CYS16
|
4.5
|
0.8
|
1.0
|
C
|
k:CYS16
|
4.7
|
0.8
|
1.0
|
CA
|
k:PRO18
|
4.7
|
0.8
|
1.0
|
CA
|
k:CYS16
|
4.8
|
0.8
|
1.0
|
|
Iron binding site 6 out
of 8 in 6zu9
Go back to
Iron Binding Sites List in 6zu9
Iron binding site 6 out
of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Fe706
b:23.9
occ:1.00
|
FE2
|
k:SF4706
|
0.0
|
23.9
|
1.0
|
S4
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
S1
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
S3
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
FE1
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
FE3
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
FE4
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
S2
|
k:SF4706
|
3.9
|
23.9
|
1.0
|
CA
|
k:GLN23
|
3.9
|
0.7
|
1.0
|
CA
|
k:PRO18
|
4.0
|
0.8
|
1.0
|
CB
|
k:PRO18
|
4.1
|
0.8
|
1.0
|
N
|
k:GLN23
|
4.1
|
0.7
|
1.0
|
O
|
k:CYS21
|
4.3
|
0.8
|
1.0
|
CB
|
k:CYS21
|
4.5
|
0.8
|
1.0
|
C
|
k:GLN23
|
4.7
|
0.7
|
1.0
|
N
|
k:GLU24
|
4.7
|
0.7
|
1.0
|
C
|
k:CYS21
|
4.8
|
0.8
|
1.0
|
O
|
k:LYS17
|
4.8
|
0.7
|
1.0
|
N
|
k:PRO18
|
4.8
|
0.8
|
1.0
|
CB
|
k:GLN23
|
4.8
|
0.7
|
1.0
|
C
|
k:PRO18
|
5.0
|
0.8
|
1.0
|
|
Iron binding site 7 out
of 8 in 6zu9
Go back to
Iron Binding Sites List in 6zu9
Iron binding site 7 out
of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Fe706
b:23.9
occ:1.00
|
FE3
|
k:SF4706
|
0.0
|
23.9
|
1.0
|
S1
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
S2
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
S4
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
FE2
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
FE1
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
FE4
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
CB
|
k:CYS25
|
3.1
|
0.8
|
1.0
|
N
|
k:CYS25
|
3.7
|
0.8
|
1.0
|
S3
|
k:SF4706
|
3.9
|
23.9
|
1.0
|
CA
|
k:CYS25
|
4.1
|
0.8
|
1.0
|
N
|
k:GLU24
|
4.3
|
0.7
|
1.0
|
C
|
k:GLN23
|
4.4
|
0.7
|
1.0
|
CA
|
k:GLN23
|
4.5
|
0.7
|
1.0
|
C
|
k:GLU24
|
4.9
|
0.7
|
1.0
|
CB
|
k:ALA48
|
4.9
|
0.8
|
1.0
|
O
|
k:GLN23
|
5.0
|
0.7
|
1.0
|
|
Iron binding site 8 out
of 8 in 6zu9
Go back to
Iron Binding Sites List in 6zu9
Iron binding site 8 out
of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
k:Fe706
b:23.9
occ:1.00
|
FE4
|
k:SF4706
|
0.0
|
23.9
|
1.0
|
S3
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
S2
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
S1
|
k:SF4706
|
2.3
|
23.9
|
1.0
|
FE1
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
FE3
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
FE2
|
k:SF4706
|
2.7
|
23.9
|
1.0
|
S4
|
k:SF4706
|
3.9
|
23.9
|
1.0
|
O
|
k:PHE67
|
4.4
|
0.7
|
1.0
|
CB
|
k:CYS65
|
4.6
|
0.7
|
1.0
|
CA
|
k:CYS16
|
4.7
|
0.8
|
1.0
|
CB
|
k:ALA69
|
4.8
|
0.8
|
1.0
|
CB
|
k:CYS16
|
4.9
|
0.8
|
1.0
|
|
Reference:
H.Kratzat,
T.Mackens-Kiani,
A.Ameismeier,
J.Cheng,
E.Dacheux,
A.Namane,
O.Berninghausen,
M.Fromont-Racine,
T.Becker,
R.Beckmann.
Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.
Page generated: Wed Aug 7 21:07:54 2024
|