Iron in PDB 6zu9: Structure of A Yeast ABCE1-Bound 48S Initiation Complex

Other elements in 6zu9:

The structure of Structure of A Yeast ABCE1-Bound 48S Initiation Complex also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Zinc (Zn) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex (pdb code 6zu9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex, PDB code: 6zu9:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 6zu9

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Iron binding site 1 out of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe705

b:17.7
occ:1.00
FE1 k:SF4705 0.0 17.7 1.0
S4 k:SF4705 2.3 17.7 1.0
S2 k:SF4705 2.3 17.7 1.0
S3 k:SF4705 2.3 17.7 1.0
FE2 k:SF4705 2.7 17.7 1.0
FE3 k:SF4705 2.7 17.7 1.0
FE4 k:SF4705 2.7 17.7 1.0
CB k:CYS29 3.3 0.9 1.0
CA k:CYS29 3.7 0.9 1.0
S1 k:SF4705 3.9 17.7 1.0
CB k:CYS61 4.3 0.8 1.0
C k:CYS29 4.5 0.9 1.0
N k:PRO30 4.5 0.9 1.0
N k:CYS29 4.8 0.9 1.0
CB k:CYS38 4.8 0.8 1.0

Iron binding site 2 out of 8 in 6zu9

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Iron binding site 2 out of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe705

b:17.7
occ:1.00
FE2 k:SF4705 0.0 17.7 1.0
S3 k:SF4705 2.3 17.7 1.0
S4 k:SF4705 2.3 17.7 1.0
S1 k:SF4705 2.3 17.7 1.0
FE1 k:SF4705 2.7 17.7 1.0
FE3 k:SF4705 2.7 17.7 1.0
FE4 k:SF4705 2.7 17.7 1.0
CB k:CYS55 3.8 0.8 1.0
S2 k:SF4705 3.9 17.7 1.0
CA k:CYS55 4.0 0.8 1.0
N k:ILE56 4.1 0.8 1.0
CB k:ALA9 4.3 0.7 1.0
N k:GLY57 4.4 0.8 1.0
C k:CYS55 4.4 0.8 1.0
CB k:CYS38 4.8 0.8 1.0

Iron binding site 3 out of 8 in 6zu9

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Iron binding site 3 out of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe705

b:17.7
occ:1.00
FE3 k:SF4705 0.0 17.7 1.0
S1 k:SF4705 2.3 17.7 1.0
S2 k:SF4705 2.3 17.7 1.0
S4 k:SF4705 2.3 17.7 1.0
FE1 k:SF4705 2.7 17.7 1.0
FE4 k:SF4705 2.7 17.7 1.0
FE2 k:SF4705 2.7 17.7 1.0
CB k:CYS61 3.2 0.8 1.0
N k:CYS61 3.8 0.8 1.0
S3 k:SF4705 3.9 17.7 1.0
CB k:ALA9 4.1 0.7 1.0
CA k:CYS61 4.1 0.8 1.0
N k:GLY59 4.2 0.8 1.0
N k:ILE60 4.5 0.8 1.0
CA k:GLY59 4.7 0.8 1.0
C k:GLY59 4.8 0.8 1.0
N k:CYS58 4.9 0.8 1.0
C k:ILE60 4.9 0.8 1.0

Iron binding site 4 out of 8 in 6zu9

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Iron binding site 4 out of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe705

b:17.7
occ:1.00
FE4 k:SF4705 0.0 17.7 1.0
S1 k:SF4705 2.3 17.7 1.0
S3 k:SF4705 2.3 17.7 1.0
S2 k:SF4705 2.3 17.7 1.0
FE3 k:SF4705 2.7 17.7 1.0
FE2 k:SF4705 2.7 17.7 1.0
FE1 k:SF4705 2.7 17.7 1.0
N k:CYS58 3.5 0.8 1.0
CB k:CYS58 3.8 0.8 1.0
S4 k:SF4705 3.9 17.7 1.0
CA k:CYS58 4.1 0.8 1.0
N k:GLY59 4.2 0.8 1.0
N k:GLY57 4.2 0.8 1.0
C k:CYS58 4.5 0.8 1.0
C k:GLY57 4.6 0.8 1.0
N k:ILE56 4.6 0.8 1.0
CA k:GLY57 4.8 0.8 1.0
C k:ILE56 4.9 0.8 1.0
N k:ILE60 4.9 0.8 1.0

Iron binding site 5 out of 8 in 6zu9

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Iron binding site 5 out of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe706

b:23.9
occ:1.00
FE1 k:SF4706 0.0 23.9 1.0
S3 k:SF4706 2.3 23.9 1.0
S4 k:SF4706 2.3 23.9 1.0
S2 k:SF4706 2.3 23.9 1.0
FE2 k:SF4706 2.7 23.9 1.0
FE4 k:SF4706 2.7 23.9 1.0
FE3 k:SF4706 2.7 23.9 1.0
CB k:ALA48 3.5 0.8 1.0
S1 k:SF4706 3.9 23.9 1.0
CB k:PRO18 4.2 0.8 1.0
N k:ALA48 4.2 0.8 1.0
CA k:ALA48 4.4 0.8 1.0
O k:CYS16 4.5 0.8 1.0
CB k:CYS16 4.5 0.8 1.0
C k:CYS16 4.7 0.8 1.0
CA k:PRO18 4.7 0.8 1.0
CA k:CYS16 4.8 0.8 1.0

Iron binding site 6 out of 8 in 6zu9

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Iron binding site 6 out of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe706

b:23.9
occ:1.00
FE2 k:SF4706 0.0 23.9 1.0
S4 k:SF4706 2.3 23.9 1.0
S1 k:SF4706 2.3 23.9 1.0
S3 k:SF4706 2.3 23.9 1.0
FE1 k:SF4706 2.7 23.9 1.0
FE3 k:SF4706 2.7 23.9 1.0
FE4 k:SF4706 2.7 23.9 1.0
S2 k:SF4706 3.9 23.9 1.0
CA k:GLN23 3.9 0.7 1.0
CA k:PRO18 4.0 0.8 1.0
CB k:PRO18 4.1 0.8 1.0
N k:GLN23 4.1 0.7 1.0
O k:CYS21 4.3 0.8 1.0
CB k:CYS21 4.5 0.8 1.0
C k:GLN23 4.7 0.7 1.0
N k:GLU24 4.7 0.7 1.0
C k:CYS21 4.8 0.8 1.0
O k:LYS17 4.8 0.7 1.0
N k:PRO18 4.8 0.8 1.0
CB k:GLN23 4.8 0.7 1.0
C k:PRO18 5.0 0.8 1.0

Iron binding site 7 out of 8 in 6zu9

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Iron binding site 7 out of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe706

b:23.9
occ:1.00
FE3 k:SF4706 0.0 23.9 1.0
S1 k:SF4706 2.3 23.9 1.0
S2 k:SF4706 2.3 23.9 1.0
S4 k:SF4706 2.3 23.9 1.0
FE2 k:SF4706 2.7 23.9 1.0
FE1 k:SF4706 2.7 23.9 1.0
FE4 k:SF4706 2.7 23.9 1.0
CB k:CYS25 3.1 0.8 1.0
N k:CYS25 3.7 0.8 1.0
S3 k:SF4706 3.9 23.9 1.0
CA k:CYS25 4.1 0.8 1.0
N k:GLU24 4.3 0.7 1.0
C k:GLN23 4.4 0.7 1.0
CA k:GLN23 4.5 0.7 1.0
C k:GLU24 4.9 0.7 1.0
CB k:ALA48 4.9 0.8 1.0
O k:GLN23 5.0 0.7 1.0

Iron binding site 8 out of 8 in 6zu9

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Iron binding site 8 out of 8 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Fe706

b:23.9
occ:1.00
FE4 k:SF4706 0.0 23.9 1.0
S3 k:SF4706 2.3 23.9 1.0
S2 k:SF4706 2.3 23.9 1.0
S1 k:SF4706 2.3 23.9 1.0
FE1 k:SF4706 2.7 23.9 1.0
FE3 k:SF4706 2.7 23.9 1.0
FE2 k:SF4706 2.7 23.9 1.0
S4 k:SF4706 3.9 23.9 1.0
O k:PHE67 4.4 0.7 1.0
CB k:CYS65 4.6 0.7 1.0
CA k:CYS16 4.7 0.8 1.0
CB k:ALA69 4.8 0.8 1.0
CB k:CYS16 4.9 0.8 1.0

Reference:

H.Kratzat, T.Mackens-Kiani, A.Ameismeier, J.Cheng, E.Dacheux, A.Namane, O.Berninghausen, M.Fromont-Racine, T.Becker, R.Beckmann. Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.
Page generated: Sun Dec 13 18:28:43 2020

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