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Iron in PDB 6zzx: Structure of Low-Light Grown Chlorella Ohadii Photosystem I

Enzymatic activity of Structure of Low-Light Grown Chlorella Ohadii Photosystem I

All present enzymatic activity of Structure of Low-Light Grown Chlorella Ohadii Photosystem I:
1.97.1.12;

Other elements in 6zzx:

The structure of Structure of Low-Light Grown Chlorella Ohadii Photosystem I also contains other interesting chemical elements:

Magnesium (Mg) 255 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I (pdb code 6zzx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I, PDB code: 6zzx:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 6zzx

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Iron binding site 1 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:16.4
occ:1.00
 FE1 A:SF43001 0.0 16.4 1.0
SG B:CYS569 2.2 13.9 1.0
S4 A:SF43001 2.3 16.4 1.0
S2 A:SF43001 2.3 16.4 1.0
S3 A:SF43001 2.3 16.4 1.0
FE2 A:SF43001 2.7 16.4 1.0
FE3 A:SF43001 2.7 16.4 1.0
FE4 A:SF43001 2.7 16.4 1.0
CB B:CYS569 3.3 13.9 1.0
CA B:CYS569 3.7 13.9 1.0
S1 A:SF43001 3.9 16.4 1.0
CZ3 B:TRP668 4.1 12.1 1.0
N B:CYS569 4.1 13.9 1.0
CD1 A:ILE720 4.2 11.1 1.0
SG B:CYS560 4.7 14.0 1.0
CG2 A:ILE720 4.7 11.1 1.0
CB B:CYS560 4.8 14.0 1.0
CE3 B:TRP668 4.8 12.1 1.0
SG A:CYS575 4.8 13.1 1.0
C B:THR568 4.8 13.4 1.0
SG A:CYS584 4.9 12.9 1.0
CG1 A:ILE720 4.9 11.1 1.0
CH2 B:TRP668 5.0 12.1 1.0

Iron binding site 2 out of 12 in 6zzx

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Iron binding site 2 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:16.4
occ:1.00
 FE2 A:SF43001 0.0 16.4 1.0
SG A:CYS584 2.2 12.9 1.0
S3 A:SF43001 2.3 16.4 1.0
S4 A:SF43001 2.3 16.4 1.0
S1 A:SF43001 2.3 16.4 1.0
FE3 A:SF43001 2.7 16.4 1.0
FE1 A:SF43001 2.7 16.4 1.0
FE4 A:SF43001 2.7 16.4 1.0
CB A:CYS584 3.3 12.9 1.0
S2 A:SF43001 3.9 16.4 1.0
CA A:CYS584 4.0 12.9 1.0
CE3 B:TRP668 4.1 12.1 1.0
CD1 B:ILE703 4.2 13.2 1.0
CZ3 B:TRP668 4.3 12.1 1.0
N A:CYS584 4.4 12.9 1.0
SG A:CYS575 4.5 13.1 1.0
CB A:CYS575 4.7 13.1 1.0
SG B:CYS569 4.8 13.9 1.0
SG B:CYS560 4.8 14.0 1.0
CG1 B:ILE703 5.0 13.2 1.0

Iron binding site 3 out of 12 in 6zzx

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Iron binding site 3 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:16.4
occ:1.00
 FE3 A:SF43001 0.0 16.4 1.0
SG A:CYS575 2.2 13.1 1.0
S2 A:SF43001 2.3 16.4 1.0
S1 A:SF43001 2.3 16.4 1.0
S4 A:SF43001 2.3 16.4 1.0
FE2 A:SF43001 2.7 16.4 1.0
FE1 A:SF43001 2.7 16.4 1.0
FE4 A:SF43001 2.7 16.4 1.0
CB A:CYS575 3.3 13.1 1.0
S3 A:SF43001 3.9 16.4 1.0
N B:PRO563 4.6 12.9 1.0
SG A:CYS584 4.6 12.9 1.0
CA A:CYS575 4.6 13.1 1.0
CD B:PRO563 4.6 12.9 1.0
CB B:PRO563 4.7 12.9 1.0
SG B:CYS569 4.7 13.9 1.0
N A:GLY577 4.7 14.2 1.0
SG B:CYS560 4.7 14.0 1.0
CD1 A:ILE720 4.7 11.1 1.0
CA A:GLY577 4.8 14.2 1.0
C A:GLY577 4.8 14.2 1.0
N A:CYS575 4.9 13.1 1.0
C B:GLY562 4.9 12.9 1.0
CA B:PRO563 4.9 12.9 1.0
O A:GLY577 4.9 14.2 1.0
CG B:PRO563 4.9 12.9 1.0

Iron binding site 4 out of 12 in 6zzx

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Iron binding site 4 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:16.4
occ:1.00
 FE4 A:SF43001 0.0 16.4 1.0
SG B:CYS560 2.2 14.0 1.0
S1 A:SF43001 2.3 16.4 1.0
S2 A:SF43001 2.3 16.4 1.0
S3 A:SF43001 2.3 16.4 1.0
FE3 A:SF43001 2.7 16.4 1.0
FE2 A:SF43001 2.7 16.4 1.0
FE1 A:SF43001 2.7 16.4 1.0
CB B:CYS560 3.1 14.0 1.0
S4 A:SF43001 3.9 16.4 1.0
CA B:CYS560 4.6 14.0 1.0
N B:GLY562 4.6 12.9 1.0
CB A:PRO578 4.7 14.4 1.0
SG A:CYS584 4.7 12.9 1.0
CD1 B:ILE703 4.7 13.2 1.0
N A:PRO578 4.7 14.4 1.0
CA B:GLY562 4.7 12.9 1.0
SG A:CYS575 4.8 13.1 1.0
SG B:CYS569 4.8 13.9 1.0
C B:GLY562 4.9 12.9 1.0
CD A:PRO578 4.9 14.4 1.0
N B:CYS560 4.9 14.0 1.0
CA A:PRO578 4.9 14.4 1.0
C A:GLY577 4.9 14.2 1.0

Iron binding site 5 out of 12 in 6zzx

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Iron binding site 5 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3002

b:22.8
occ:1.00
 FE1 C:SF43002 0.0 22.8 1.0
SG C:CYS54 2.3 17.2 1.0
S4 C:SF43002 2.3 22.8 1.0
S2 C:SF43002 2.3 22.8 1.0
S3 C:SF43002 2.3 22.8 1.0
FE4 C:SF43002 2.7 22.8 1.0
FE3 C:SF43002 2.7 22.8 1.0
FE2 C:SF43002 2.7 22.8 1.0
CB C:CYS54 3.3 17.2 1.0
N C:CYS54 3.8 17.2 1.0
S1 C:SF43002 3.9 22.8 1.0
CG2 C:VAL67 3.9 19.4 1.0
CA C:CYS54 4.2 17.2 1.0
N C:ARG53 4.4 17.6 1.0
CA C:LYS52 4.4 16.4 1.0
N C:LYS52 4.4 16.4 1.0
C C:LYS52 4.7 16.4 1.0
SG C:CYS51 4.8 17.1 1.0
SG C:CYS48 4.8 22.1 1.0
SG C:CYS21 4.8 21.0 1.0
CD1 C:LEU26 4.9 22.9 1.0
C C:ARG53 4.9 17.6 1.0

Iron binding site 6 out of 12 in 6zzx

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Iron binding site 6 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3002

b:22.8
occ:1.00
 FE2 C:SF43002 0.0 22.8 1.0
SG C:CYS51 2.3 17.1 1.0
S3 C:SF43002 2.3 22.8 1.0
S4 C:SF43002 2.3 22.8 1.0
S1 C:SF43002 2.3 22.8 1.0
FE4 C:SF43002 2.7 22.8 1.0
FE3 C:SF43002 2.7 22.8 1.0
FE1 C:SF43002 2.7 22.8 1.0
N C:LYS52 3.6 16.4 1.0
N C:CYS51 3.6 17.1 1.0
CB C:CYS51 3.8 17.1 1.0
S2 C:SF43002 3.9 22.8 1.0
CD C:PRO22 3.9 20.6 1.0
N C:ARG53 4.0 17.6 1.0
CA C:CYS51 4.0 17.1 1.0
C C:CYS51 4.2 17.1 1.0
N C:GLY50 4.4 18.0 1.0
CA C:LYS52 4.4 16.4 1.0
C C:GLY50 4.4 18.0 1.0
CG2 C:VAL49 4.5 20.9 1.0
CG C:PRO22 4.5 20.6 1.0
CB C:ARG53 4.7 17.6 1.0
C C:LYS52 4.7 16.4 1.0
SG C:CYS48 4.7 22.1 1.0
CA C:GLY50 4.7 18.0 1.0
SG C:CYS21 4.7 21.0 1.0
SG C:CYS54 4.8 17.2 1.0
N C:CYS54 4.8 17.2 1.0
CA C:ARG53 4.9 17.6 1.0

Iron binding site 7 out of 12 in 6zzx

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Iron binding site 7 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3002

b:22.8
occ:1.00
 FE3 C:SF43002 0.0 22.8 1.0
SG C:CYS21 2.3 21.0 1.0
S4 C:SF43002 2.3 22.8 1.0
S1 C:SF43002 2.3 22.8 1.0
S2 C:SF43002 2.3 22.8 1.0
FE4 C:SF43002 2.7 22.8 1.0
FE2 C:SF43002 2.7 22.8 1.0
FE1 C:SF43002 2.7 22.8 1.0
CB C:CYS21 3.4 21.0 1.0
CA C:CYS21 3.8 21.0 1.0
S3 C:SF43002 3.9 22.8 1.0
CD C:PRO22 4.0 20.6 1.0
CB C:VAL25 4.2 23.5 1.0
OG1 C:THR23 4.3 22.8 1.0
CG2 C:VAL25 4.3 23.5 1.0
N C:PRO22 4.5 20.6 1.0
C C:CYS21 4.6 21.0 1.0
SG C:CYS51 4.6 17.1 1.0
SG C:CYS54 4.7 17.2 1.0
SG C:CYS48 4.8 22.1 1.0
CB C:CYS54 4.9 17.2 1.0
CG1 C:VAL25 4.9 23.5 1.0
N C:CYS21 4.9 21.0 1.0

Iron binding site 8 out of 12 in 6zzx

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Iron binding site 8 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3002

b:22.8
occ:1.00
 FE4 C:SF43002 0.0 22.8 1.0
SG C:CYS48 2.3 22.1 1.0
S3 C:SF43002 2.3 22.8 1.0
S1 C:SF43002 2.3 22.8 1.0
S2 C:SF43002 2.3 22.8 1.0
FE3 C:SF43002 2.7 22.8 1.0
FE2 C:SF43002 2.7 22.8 1.0
FE1 C:SF43002 2.7 22.8 1.0
CB C:CYS48 3.4 22.1 1.0
S4 C:SF43002 3.9 22.8 1.0
CA C:CYS48 3.9 22.1 1.0
N C:GLY50 4.0 18.0 1.0
N C:VAL49 4.2 20.9 1.0
C C:CYS48 4.4 22.1 1.0
CA C:GLY50 4.5 18.0 1.0
CG2 C:VAL67 4.6 19.4 1.0
CG2 C:VAL5 4.6 22.6 1.0
CG2 C:VAL25 4.7 23.5 1.0
SG C:CYS21 4.8 21.0 1.0
CB C:VAL25 4.8 23.5 1.0
SG C:CYS54 4.9 17.2 1.0
CG1 C:VAL67 4.9 19.4 1.0
CG1 C:VAL25 4.9 23.5 1.0
SG C:CYS51 4.9 17.1 1.0
N C:CYS51 4.9 17.1 1.0

Iron binding site 9 out of 12 in 6zzx

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Iron binding site 9 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3003

b:26.6
occ:1.00
 FE1 C:SF43003 0.0 26.6 1.0
SG C:CYS58 2.3 19.1 1.0
S3 C:SF43003 2.3 26.6 1.0
S2 C:SF43003 2.3 26.6 1.0
S4 C:SF43003 2.3 26.6 1.0
FE4 C:SF43003 2.7 26.6 1.0
FE3 C:SF43003 2.7 26.6 1.0
FE2 C:SF43003 2.7 26.6 1.0
CB C:CYS58 3.4 19.1 1.0
CA C:CYS58 3.8 19.1 1.0
S1 C:SF43003 3.9 26.6 1.0
CB C:SER64 4.0 21.2 1.0
CD C:PRO59 4.1 19.5 1.0
CG1 C:VAL65 4.3 19.5 1.0
OG C:SER64 4.4 21.2 1.0
SG C:CYS14 4.6 22.4 1.0
C C:CYS58 4.7 19.1 1.0
N C:PRO59 4.7 19.5 1.0
N C:SER64 4.8 21.2 1.0
N C:VAL65 4.8 19.5 1.0
SG C:CYS17 4.8 21.8 1.0
CB C:CYS17 4.8 21.8 1.0
CA C:SER64 4.8 21.2 1.0
SG C:CYS11 4.8 23.8 1.0
N C:CYS58 4.9 19.1 1.0
CG2 C:THR60 4.9 20.9 1.0
OG1 C:THR60 4.9 20.9 1.0
CB C:VAL65 4.9 19.5 1.0
C C:SER64 5.0 21.2 1.0
CB C:CYS11 5.0 23.8 1.0

Iron binding site 10 out of 12 in 6zzx

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Iron binding site 10 out of 12 in the Structure of Low-Light Grown Chlorella Ohadii Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Low-Light Grown Chlorella Ohadii Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3003

b:26.6
occ:1.00
 FE2 C:SF43003 0.0 26.6 1.0
SG C:CYS17 2.3 21.8 1.0
S4 C:SF43003 2.3 26.6 1.0
S1 C:SF43003 2.3 26.6 1.0
S3 C:SF43003 2.3 26.6 1.0
FE3 C:SF43003 2.7 26.6 1.0
FE4 C:SF43003 2.7 26.6 1.0
FE1 C:SF43003 2.7 26.6 1.0
CB C:CYS17 3.0 21.8 1.0
N C:CYS17 3.8 21.8 1.0
S2 C:SF43003 3.9 26.6 1.0
CA C:CYS17 4.0 21.8 1.0
CB C:ALA40 4.2 26.0 1.0
CG1 C:VAL65 4.6 19.5 1.0
SG C:CYS11 4.8 23.8 1.0
SG C:CYS14 4.8 22.4 1.0
SG C:CYS58 4.8 19.1 1.0
N C:GLN16 4.8 22.7 1.0
N C:VAL18 4.9 21.6 1.0
CB C:VAL65 4.9 19.5 1.0
C C:CYS17 4.9 21.8 1.0
N C:THR15 5.0 22.6 1.0

Reference:

I.Caspy, N.Nelson, R.Nechushtai, E.Neumann, Y.Shkolnisky. Structural and Functional Alterations in Photosystem I of Chlorella Ohadii Grown at High and Low Light Conditions To Be Published.
Page generated: Sat Aug 21 14:11:45 2021

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