Iron in PDB 7a24: Assembly Intermediate of the Plant Mitochondrial Complex I

Other elements in 7a24:

The structure of Assembly Intermediate of the Plant Mitochondrial Complex I also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Assembly Intermediate of the Plant Mitochondrial Complex I (pdb code 7a24). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Assembly Intermediate of the Plant Mitochondrial Complex I, PDB code: 7a24:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 7a24

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Iron binding site 1 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:19.3
occ:1.00
FE1 A:SF4501 0.0 19.3 1.0
S2 A:SF4501 2.3 19.3 1.0
S3 A:SF4501 2.3 19.3 1.0
S4 A:SF4501 2.3 19.3 1.0
SG A:CYS405 2.4 18.9 1.0
FE3 A:SF4501 2.7 19.3 1.0
FE4 A:SF4501 2.7 19.3 1.0
FE2 A:SF4501 2.7 19.3 1.0
CB A:CYS405 3.2 18.9 1.0
N A:CYS405 3.3 18.9 1.0
CA A:CYS405 3.8 18.9 1.0
S1 A:SF4501 3.9 19.3 1.0
CB A:ILE447 3.9 17.4 1.0
N A:ILE447 4.0 17.4 1.0
CG1 A:ILE447 4.2 17.4 1.0
CB A:GLN404 4.3 18.6 1.0
C A:GLN404 4.3 18.6 1.0
O A:CYS405 4.4 18.9 1.0
N A:GLN404 4.4 18.6 1.0
CA A:ILE447 4.5 17.4 1.0
N A:CYS448 4.5 20.1 1.0
CB A:CYS408 4.6 17.3 1.0
CD1 A:ILE447 4.6 17.4 1.0
CA A:GLN404 4.6 18.6 1.0
C A:CYS405 4.6 18.9 1.0
OE1 A:GLN404 4.6 18.6 1.0
CB A:THR446 4.8 16.5 1.0
CG2 A:ILE447 4.9 17.4 1.0

Iron binding site 2 out of 28 in 7a24

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Iron binding site 2 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:19.3
occ:1.00
FE2 A:SF4501 0.0 19.3 1.0
S1 A:SF4501 2.3 19.3 1.0
S3 A:SF4501 2.3 19.3 1.0
S4 A:SF4501 2.3 19.3 1.0
FE3 A:SF4501 2.7 19.3 1.0
FE4 A:SF4501 2.7 19.3 1.0
FE1 A:SF4501 2.7 19.3 1.0
SG A:CYS408 2.9 17.3 1.0
CB A:CYS408 2.9 17.3 1.0
SG A:CYS405 3.8 18.9 1.0
S2 A:SF4501 3.9 19.3 1.0
CB A:LEU450 4.2 20.6 1.0
CA A:CYS408 4.4 17.3 1.0
N A:GLY451 4.4 23.8 1.0
CD2 A:LEU450 4.5 20.6 1.0
SG A:CYS448 4.7 20.1 1.0
CB A:SER401 4.7 24.5 1.0
CG2 A:THR446 4.8 16.5 1.0
CG A:LEU450 4.8 20.6 1.0
CB A:THR446 4.8 16.5 1.0
N A:ARG409 4.9 18.5 1.0
C A:LEU450 4.9 20.6 1.0
C A:CYS408 4.9 17.3 1.0

Iron binding site 3 out of 28 in 7a24

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Iron binding site 3 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:19.3
occ:1.00
FE3 A:SF4501 0.0 19.3 1.0
S4 A:SF4501 2.3 19.3 1.0
S1 A:SF4501 2.3 19.3 1.0
S2 A:SF4501 2.3 19.3 1.0
FE2 A:SF4501 2.7 19.3 1.0
FE4 A:SF4501 2.7 19.3 1.0
FE1 A:SF4501 2.7 19.3 1.0
SG A:CYS402 2.8 21.3 1.0
N A:GLN404 3.3 18.6 1.0
N A:GLY403 3.3 18.9 1.0
N A:CYS402 3.5 21.3 1.0
C A:CYS402 3.8 21.3 1.0
S3 A:SF4501 3.9 19.3 1.0
CB A:CYS402 3.9 21.3 1.0
CA A:CYS402 3.9 21.3 1.0
CB A:GLN404 4.1 18.6 1.0
C A:GLY403 4.1 18.9 1.0
CA A:GLY403 4.1 18.9 1.0
CA A:GLN404 4.2 18.6 1.0
N A:CYS405 4.2 18.9 1.0
C A:SER401 4.2 24.5 1.0
CD A:PRO246 4.6 18.5 1.0
O A:CYS402 4.7 21.3 1.0
SG A:CYS405 4.7 18.9 1.0
C A:GLN404 4.7 18.6 1.0
CA A:SER401 4.8 24.5 1.0
O A:SER401 4.8 24.5 1.0
SG A:CYS408 5.0 17.3 1.0

Iron binding site 4 out of 28 in 7a24

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Iron binding site 4 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:19.3
occ:1.00
FE4 A:SF4501 0.0 19.3 1.0
S3 A:SF4501 2.3 19.3 1.0
S2 A:SF4501 2.3 19.3 1.0
S1 A:SF4501 2.3 19.3 1.0
FE2 A:SF4501 2.7 19.3 1.0
FE3 A:SF4501 2.7 19.3 1.0
FE1 A:SF4501 2.7 19.3 1.0
SG A:CYS448 2.8 20.1 1.0
CG A:PRO246 3.6 18.5 1.0
CB A:CYS448 3.7 20.1 1.0
S4 A:SF4501 3.9 19.3 1.0
N A:CYS448 4.0 20.1 1.0
CD A:PRO246 4.1 18.5 1.0
CB A:LEU450 4.2 20.6 1.0
CB A:PRO246 4.4 18.5 1.0
CA A:CYS448 4.4 20.1 1.0
SG A:CYS402 4.4 21.3 1.0
SG A:CYS405 4.8 18.9 1.0
CB A:ILE447 4.9 17.4 1.0
C A:CYS448 4.9 20.1 1.0

Iron binding site 5 out of 28 in 7a24

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Iron binding site 5 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe801

b:41.2
occ:1.00
FE1 C:SF4801 0.0 41.2 1.0
S2 C:SF4801 2.3 41.2 1.0
S3 C:SF4801 2.3 41.2 1.0
S4 C:SF4801 2.3 41.2 1.0
SG C:CYS179 2.3 15.1 1.0
FE4 C:SF4801 2.7 41.2 1.0
FE3 C:SF4801 2.7 41.2 1.0
FE2 C:SF4801 2.7 41.2 1.0
CB C:CYS179 3.1 15.1 1.0
S1 C:SF4801 3.9 41.2 1.0
N C:GLN182 4.1 13.8 1.0
CB C:LEU181 4.2 18.0 1.0
CB C:GLN182 4.2 13.8 1.0
O C:GLN175 4.4 20.8 1.0
CA C:CYS179 4.5 15.1 1.0
CA C:GLN182 4.7 13.8 1.0
OE1 C:GLN182 4.7 13.8 1.0
SG C:CYS173 4.8 22.6 1.0
O C:GLY176 4.8 17.1 1.0
SG C:CYS170 4.8 22.0 1.0
N C:GLY271 4.9 19.0 1.0
CD C:GLN182 4.9 13.8 1.0
CG C:GLN182 4.9 13.8 1.0
C C:LEU181 4.9 18.0 1.0
CG C:LEU181 4.9 18.0 1.0
NE2 C:HIS166 5.0 16.6 1.0
CA C:LEU181 5.0 18.0 1.0
N C:LEU181 5.0 18.0 1.0

Iron binding site 6 out of 28 in 7a24

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Iron binding site 6 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe801

b:41.2
occ:1.00
FE2 C:SF4801 0.0 41.2 1.0
S4 C:SF4801 2.3 41.2 1.0
S3 C:SF4801 2.3 41.2 1.0
S1 C:SF4801 2.3 41.2 1.0
SG C:CYS170 2.3 22.0 1.0
FE4 C:SF4801 2.7 41.2 1.0
FE3 C:SF4801 2.7 41.2 1.0
FE1 C:SF4801 2.7 41.2 1.0
CB C:CYS170 2.9 22.0 1.0
CA C:CYS170 3.1 22.0 1.0
N C:CYS170 3.6 22.0 1.0
CE G:MET306 3.7 17.7 1.0
S2 C:SF4801 3.9 41.2 1.0
OE1 C:GLN182 4.0 13.8 1.0
NE2 C:HIS166 4.3 16.6 1.0
C C:ASP169 4.4 17.5 1.0
C C:CYS170 4.5 22.0 1.0
CB C:CYS173 4.7 22.6 1.0
CD C:GLN182 4.8 13.8 1.0
O C:CYS170 4.8 22.0 1.0
CG1 G:ILE310 4.9 13.6 1.0
O C:ASP169 4.9 17.5 1.0
CD2 C:HIS166 5.0 16.6 1.0
SG C:CYS173 5.0 22.6 1.0

Iron binding site 7 out of 28 in 7a24

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Iron binding site 7 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe801

b:41.2
occ:1.00
FE3 C:SF4801 0.0 41.2 1.0
NE2 C:HIS166 2.2 16.6 1.0
S1 C:SF4801 2.3 41.2 1.0
S4 C:SF4801 2.3 41.2 1.0
S2 C:SF4801 2.3 41.2 1.0
CE1 C:HIS166 2.6 16.6 1.0
FE4 C:SF4801 2.7 41.2 1.0
FE2 C:SF4801 2.7 41.2 1.0
FE1 C:SF4801 2.7 41.2 1.0
CD2 C:HIS166 3.4 16.6 1.0
ND1 C:HIS166 3.8 16.6 1.0
S3 C:SF4801 3.9 41.2 1.0
CD2 C:LEU181 4.0 18.0 1.0
CG C:HIS166 4.2 16.6 1.0
CE G:MET306 4.3 17.7 1.0
SG C:CYS179 4.5 15.1 1.0
CG C:LEU181 4.6 18.0 1.0
SG C:CYS170 4.6 22.0 1.0
CB C:LEU181 4.6 18.0 1.0
CG2 C:VAL270 4.7 17.1 1.0
CG1 C:VAL270 4.8 17.1 1.0
CB C:ARG217 4.8 15.9 1.0

Iron binding site 8 out of 28 in 7a24

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Iron binding site 8 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe801

b:41.2
occ:1.00
FE4 C:SF4801 0.0 41.2 1.0
S2 C:SF4801 2.3 41.2 1.0
S3 C:SF4801 2.3 41.2 1.0
S1 C:SF4801 2.3 41.2 1.0
SG C:CYS173 2.5 22.6 1.0
FE2 C:SF4801 2.7 41.2 1.0
FE3 C:SF4801 2.7 41.2 1.0
FE1 C:SF4801 2.7 41.2 1.0
CB C:CYS173 3.0 22.6 1.0
S4 C:SF4801 3.9 41.2 1.0
N C:GLY271 4.1 19.0 1.0
CA C:CYS170 4.3 22.0 1.0
CA C:GLY271 4.3 19.0 1.0
NE2 C:HIS166 4.5 16.6 1.0
CD C:ARG217 4.5 15.9 1.0
CA C:CYS173 4.5 22.6 1.0
SG C:CYS179 4.6 15.1 1.0
N C:CYS170 4.6 22.0 1.0
O C:GLN175 4.6 20.8 1.0
O C:ASP169 4.7 17.5 1.0
C C:ASP169 4.7 17.5 1.0
SG C:CYS170 4.9 22.0 1.0
CB C:CYS170 4.9 22.0 1.0
CE1 C:HIS166 5.0 16.6 1.0
CG C:ARG217 5.0 15.9 1.0

Iron binding site 9 out of 28 in 7a24

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Iron binding site 9 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe802

b:47.1
occ:1.00
FE1 C:SF4802 0.0 47.1 1.0
SG C:CYS221 2.2 19.3 1.0
S2 C:SF4802 2.3 47.1 1.0
S4 C:SF4802 2.3 47.1 1.0
S3 C:SF4802 2.3 47.1 1.0
FE4 C:SF4802 2.7 47.1 1.0
FE2 C:SF4802 2.7 47.1 1.0
FE3 C:SF4802 2.7 47.1 1.0
N C:CYS221 3.8 19.3 1.0
CD C:PRO269 3.8 16.4 1.0
CB C:CYS221 3.9 19.3 1.0
S1 C:SF4802 3.9 47.1 1.0
N C:ARG223 3.9 16.9 1.0
N C:THR222 3.9 18.6 1.0
CA C:CYS221 4.2 19.3 1.0
CG C:PRO269 4.2 16.4 1.0
C C:CYS221 4.3 19.3 1.0
CB C:ARG223 4.3 16.9 1.0
SG C:CYS268 4.6 19.6 1.0
N C:CYS224 4.6 14.2 1.0
CA C:ARG223 4.7 16.9 1.0
SG C:CYS224 4.7 14.2 1.0
C C:THR222 4.7 18.6 1.0
N C:GLN220 4.7 18.4 1.0
CA C:THR222 4.8 18.6 1.0
CG1 C:ILE219 4.8 13.2 1.0
C C:GLN220 4.8 18.4 1.0

Iron binding site 10 out of 28 in 7a24

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Iron binding site 10 out of 28 in the Assembly Intermediate of the Plant Mitochondrial Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Assembly Intermediate of the Plant Mitochondrial Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe802

b:47.1
occ:1.00
FE2 C:SF4802 0.0 47.1 1.0
S1 C:SF4802 2.3 47.1 1.0
S4 C:SF4802 2.3 47.1 1.0
S3 C:SF4802 2.3 47.1 1.0
SG C:CYS218 2.5 13.7 1.0
FE3 C:SF4802 2.7 47.1 1.0
FE1 C:SF4802 2.7 47.1 1.0
FE4 C:SF4802 2.7 47.1 1.0
CB C:CYS218 3.1 13.7 1.0
N C:GLN220 3.6 18.4 1.0
CA C:CYS218 3.8 13.7 1.0
N C:ILE219 3.8 13.2 1.0
S2 C:SF4802 3.9 47.1 1.0
C C:CYS218 4.0 13.7 1.0
CG1 C:ILE248 4.1 22.9 1.0
CA C:GLN220 4.2 18.4 1.0
N C:CYS221 4.4 19.3 1.0
SG C:CYS221 4.6 19.3 1.0
C C:ILE219 4.6 13.2 1.0
CB C:ILE248 4.7 22.9 1.0
SG C:CYS224 4.7 14.2 1.0
CE C:MET215 4.8 20.0 1.0
SG C:CYS268 4.8 19.6 1.0
C C:GLN220 4.8 18.4 1.0
CA C:ILE219 4.8 13.2 1.0
O C:CYS218 4.9 13.7 1.0
CG2 C:ILE248 4.9 22.9 1.0
CB C:ALA272 5.0 17.1 1.0

Reference:

H.Soufari, C.Parrot, L.Kuhn, F.Waltz, Y.Hashem. Specific Features and Assembly of the Plant Mitochondrial Complex I Revealed By Cryo-Em. Nat Commun V. 11 5195 2020.
ISSN: ESSN 2041-1723
PubMed: 33060577
DOI: 10.1038/S41467-020-18814-W
Page generated: Sun Dec 13 18:33:29 2020

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