Iron in PDB 7ah0: Crystal Structure of the De Novo Designed Two-Heme Binding Protein, 4D2
Protein crystallography data
The structure of Crystal Structure of the De Novo Designed Two-Heme Binding Protein, 4D2, PDB code: 7ah0
was solved by
G.H.Hutchins,
A.E.Parnell,
J.L.R.Anderson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.24 /
1.91
|
Space group
|
H 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.25,
81.25,
59.06,
90,
90,
120
|
R / Rfree (%)
|
20.5 /
24.4
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of the De Novo Designed Two-Heme Binding Protein, 4D2
(pdb code 7ah0). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Crystal Structure of the De Novo Designed Two-Heme Binding Protein, 4D2, PDB code: 7ah0:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 7ah0
Go back to
Iron Binding Sites List in 7ah0
Iron binding site 1 out
of 2 in the Crystal Structure of the De Novo Designed Two-Heme Binding Protein, 4D2
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the De Novo Designed Two-Heme Binding Protein, 4D2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:29.5
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
29.5
|
1.0
|
ND
|
A:HEM201
|
1.9
|
37.2
|
1.0
|
NA
|
A:HEM201
|
2.0
|
35.8
|
1.0
|
NE2
|
A:HIS9
|
2.0
|
30.2
|
1.0
|
NE2
|
A:HIS67
|
2.1
|
29.9
|
1.0
|
NB
|
A:HEM201
|
2.1
|
31.2
|
1.0
|
NC
|
A:HEM201
|
2.1
|
32.3
|
1.0
|
CE1
|
A:HIS9
|
2.9
|
30.9
|
1.0
|
C4D
|
A:HEM201
|
2.9
|
35.1
|
1.0
|
C1D
|
A:HEM201
|
3.0
|
35.0
|
1.0
|
C1A
|
A:HEM201
|
3.0
|
36.7
|
1.0
|
C4B
|
A:HEM201
|
3.0
|
33.5
|
1.0
|
CE1
|
A:HIS67
|
3.0
|
31.0
|
1.0
|
C4A
|
A:HEM201
|
3.1
|
33.0
|
1.0
|
C4C
|
A:HEM201
|
3.1
|
33.8
|
1.0
|
C1B
|
A:HEM201
|
3.1
|
34.8
|
1.0
|
CD2
|
A:HIS67
|
3.1
|
29.9
|
1.0
|
C1C
|
A:HEM201
|
3.1
|
32.4
|
1.0
|
CD2
|
A:HIS9
|
3.2
|
36.5
|
1.0
|
CHA
|
A:HEM201
|
3.3
|
38.2
|
1.0
|
CHD
|
A:HEM201
|
3.4
|
31.2
|
1.0
|
CHC
|
A:HEM201
|
3.4
|
31.4
|
1.0
|
CHB
|
A:HEM201
|
3.5
|
28.1
|
1.0
|
ND1
|
A:HIS9
|
4.1
|
27.5
|
1.0
|
ND1
|
A:HIS67
|
4.1
|
28.6
|
1.0
|
C2A
|
A:HEM201
|
4.2
|
41.2
|
1.0
|
CG
|
A:HIS9
|
4.2
|
30.2
|
1.0
|
CG
|
A:HIS67
|
4.2
|
28.9
|
1.0
|
C3D
|
A:HEM201
|
4.2
|
44.1
|
1.0
|
C3A
|
A:HEM201
|
4.2
|
39.3
|
1.0
|
C2D
|
A:HEM201
|
4.2
|
41.4
|
1.0
|
C3B
|
A:HEM201
|
4.3
|
36.4
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
37.1
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
34.7
|
1.0
|
C2C
|
A:HEM201
|
4.3
|
37.1
|
1.0
|
|
Iron binding site 2 out
of 2 in 7ah0
Go back to
Iron Binding Sites List in 7ah0
Iron binding site 2 out
of 2 in the Crystal Structure of the De Novo Designed Two-Heme Binding Protein, 4D2
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the De Novo Designed Two-Heme Binding Protein, 4D2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe202
b:30.2
occ:1.00
|
FE
|
A:HEM202
|
0.0
|
30.2
|
1.0
|
ND
|
A:HEM202
|
1.9
|
35.2
|
1.0
|
NA
|
A:HEM202
|
2.0
|
30.2
|
1.0
|
NE2
|
A:HIS37
|
2.1
|
28.3
|
1.0
|
NE2
|
A:HIS95
|
2.1
|
30.3
|
1.0
|
NB
|
A:HEM202
|
2.1
|
30.9
|
1.0
|
NC
|
A:HEM202
|
2.1
|
33.0
|
1.0
|
C1D
|
A:HEM202
|
2.9
|
36.8
|
1.0
|
C4D
|
A:HEM202
|
3.0
|
32.9
|
1.0
|
C4B
|
A:HEM202
|
3.0
|
32.1
|
1.0
|
CE1
|
A:HIS95
|
3.0
|
30.8
|
1.0
|
C4C
|
A:HEM202
|
3.0
|
32.4
|
1.0
|
CD2
|
A:HIS37
|
3.0
|
27.2
|
1.0
|
C4A
|
A:HEM202
|
3.0
|
28.8
|
1.0
|
C1B
|
A:HEM202
|
3.1
|
29.7
|
1.0
|
C1A
|
A:HEM202
|
3.1
|
30.4
|
1.0
|
C1C
|
A:HEM202
|
3.1
|
34.0
|
1.0
|
CE1
|
A:HIS37
|
3.1
|
31.4
|
1.0
|
CD2
|
A:HIS95
|
3.1
|
36.8
|
1.0
|
CHD
|
A:HEM202
|
3.3
|
33.4
|
1.0
|
CHC
|
A:HEM202
|
3.4
|
32.1
|
1.0
|
CHB
|
A:HEM202
|
3.4
|
28.1
|
1.0
|
CHA
|
A:HEM202
|
3.5
|
30.2
|
1.0
|
ND1
|
A:HIS95
|
4.1
|
27.9
|
1.0
|
C2D
|
A:HEM202
|
4.2
|
38.9
|
1.0
|
CG
|
A:HIS37
|
4.2
|
27.1
|
1.0
|
ND1
|
A:HIS37
|
4.2
|
26.8
|
1.0
|
C3D
|
A:HEM202
|
4.2
|
39.1
|
1.0
|
CG
|
A:HIS95
|
4.2
|
28.7
|
1.0
|
C3B
|
A:HEM202
|
4.2
|
35.5
|
1.0
|
C3A
|
A:HEM202
|
4.2
|
31.4
|
1.0
|
C2A
|
A:HEM202
|
4.3
|
33.3
|
1.0
|
C3C
|
A:HEM202
|
4.3
|
36.7
|
1.0
|
C2B
|
A:HEM202
|
4.3
|
31.3
|
1.0
|
C2C
|
A:HEM202
|
4.3
|
35.2
|
1.0
|
CE
|
A:MET23
|
5.0
|
44.4
|
1.0
|
CE
|
A:MET81
|
5.0
|
39.3
|
1.0
|
|
Reference:
G.H.Hutchins,
A.E.Parnell,
J.L.R.Anderson.
Crystal Structure of the De Novo Designed Two-Heme Binding Protein, 4D2 To Be Published.
Page generated: Wed Aug 7 22:05:23 2024
|