Atomistry » Iron » PDB 7ah6-7bgi » 7ai8
Atomistry »
  Iron »
    PDB 7ah6-7bgi »
      7ai8 »

Iron in PDB 7ai8: Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source

Enzymatic activity of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source

All present enzymatic activity of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source:
1.17.4.1;

Protein crystallography data

The structure of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ai8 was solved by O.Aurelius, J.John, I.Martiel, C.Padeste, A.Karpik, C.Y.Huang, M.Hogbom, M.Wang, M.Marsh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.97 / 2.10
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 90.35, 90.35, 208.55, 90, 90, 120
R / Rfree (%) 19 / 21.9

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source (pdb code 7ai8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source, PDB code: 7ai8:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7ai8

Go back to Iron Binding Sites List in 7ai8
Iron binding site 1 out of 2 in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:40.7
occ:1.00
OE2 A:GLU204 2.0 44.5 1.0
O A:HOH545 2.0 34.6 1.0
O A:HOH550 2.1 38.2 1.0
OE1 A:GLU238 2.2 44.9 1.0
ND1 A:HIS241 2.3 39.6 1.0
OE2 A:GLU115 2.3 48.2 1.0
CD A:GLU204 3.0 39.7 1.0
CD A:GLU238 3.0 46.9 1.0
CD A:GLU115 3.1 43.8 1.0
OE1 A:GLU115 3.2 39.3 1.0
CE1 A:HIS241 3.2 41.1 1.0
OE2 A:GLU238 3.2 43.5 1.0
FE A:FE402 3.3 40.0 1.0
CG A:HIS241 3.3 43.3 1.0
CG A:GLU204 3.6 39.1 1.0
CB A:HIS241 3.6 42.6 1.0
OE1 A:GLU204 4.0 39.9 1.0
NE1 A:TRP111 4.0 41.2 1.0
OD1 A:ASP84 4.3 43.2 1.0
NE2 A:HIS241 4.3 36.9 1.0
O A:HOH564 4.3 46.1 1.0
CB A:GLU204 4.4 43.3 1.0
CD2 A:HIS241 4.4 37.8 1.0
CG A:GLU238 4.4 39.9 1.0
NE2 A:GLN87 4.4 40.9 1.0
CG A:GLU115 4.5 39.5 1.0
CA A:GLU238 4.5 42.3 1.0
CD1 A:TRP111 4.6 36.4 1.0
ND1 A:HIS118 4.8 38.9 1.0
CE1 A:HIS118 4.8 43.5 1.0
CB A:GLU238 4.8 41.5 1.0
OD2 A:ASP84 5.0 41.2 1.0
CG A:GLN87 5.0 40.3 1.0

Iron binding site 2 out of 2 in 7ai8

Go back to Iron Binding Sites List in 7ai8
Iron binding site 2 out of 2 in the Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Ribonucleotide Reductase R2 From Escherichia Coli Collected By Still Serial Crystallography on A Coc Membrane at A Synchrotron Source within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:40.0
occ:1.00
O A:HOH550 1.9 38.2 1.0
OD2 A:ASP84 2.0 41.2 1.0
OE1 A:GLU115 2.2 39.3 1.0
ND1 A:HIS118 2.2 38.9 1.0
O A:HOH564 2.4 46.1 1.0
CG A:ASP84 2.7 44.5 1.0
OD1 A:ASP84 2.8 43.2 1.0
O A:HOH545 2.9 34.6 1.0
CE1 A:HIS118 3.1 43.5 1.0
CG A:HIS118 3.3 37.6 1.0
CD A:GLU115 3.3 43.8 1.0
FE A:FE401 3.3 40.7 1.0
CB A:HIS118 3.7 38.0 1.0
OE2 A:GLU115 3.8 48.2 1.0
OE2 A:GLU238 4.0 43.5 1.0
CB A:ASP84 4.1 42.6 1.0
NE2 A:HIS118 4.3 38.4 1.0
CG2 A:ILE234 4.3 40.4 1.0
CZ A:PHE208 4.4 43.8 1.0
CD2 A:HIS118 4.4 41.2 1.0
CE1 A:PHE208 4.5 47.9 1.0
CE1 A:HIS241 4.5 41.1 1.0
ND1 A:HIS241 4.5 39.6 1.0
CD A:GLU238 4.6 46.9 1.0
CG A:GLU115 4.6 39.5 1.0
OE1 A:GLU238 4.6 44.9 1.0
CA A:GLU115 4.6 45.0 1.0
CB A:GLU115 4.8 37.3 1.0
CE2 A:PHE208 4.9 44.9 1.0
OH A:TYR122 4.9 52.5 1.0

Reference:

I.Martiel, J.H.Beale, A.Karpik, C.Y.Huang, L.Vera, N.Olieric, M.Wranik, C.J.Tsai, J.Muhle, O.Aurelius, J.John, M.Hogbom, M.Wang, M.Marsh, C.Padeste. Versatile Microporous Polymer-Based Supports For Serial Macromolecular Crystallography Acta Crystallogr.,Sect.D 2021.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798321007324
Page generated: Fri Sep 24 14:00:34 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy