Iron in PDB 7aqs: Crystal Structure of E. Coli Dps in Space Group P1
Protein crystallography data
The structure of Crystal Structure of E. Coli Dps in Space Group P1, PDB code: 7aqs
was solved by
R.P.Jakob,
J.Pipercevic,
R.Righetto,
K.Goldie,
H.Stahlberg,
T.Maier,
S.Hiller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.90 /
2.80
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
91.55,
91.81,
172.64,
91.17,
100.52,
119.92
|
R / Rfree (%)
|
20.2 /
24.3
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of E. Coli Dps in Space Group P1
(pdb code 7aqs). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the
Crystal Structure of E. Coli Dps in Space Group P1, PDB code: 7aqs:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 1 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:24.2
occ:0.89
|
OE2
|
A:GLU82
|
2.0
|
38.4
|
1.0
|
NE2
|
C:HIS51
|
2.0
|
41.9
|
1.0
|
OD2
|
A:ASP78
|
2.4
|
23.3
|
1.0
|
OD1
|
A:ASP78
|
2.8
|
24.2
|
1.0
|
CG
|
A:ASP78
|
2.9
|
22.8
|
1.0
|
HZ3
|
C:LYS48
|
2.9
|
34.7
|
1.0
|
CD2
|
C:HIS51
|
3.0
|
41.5
|
1.0
|
HD2
|
C:HIS51
|
3.1
|
49.8
|
1.0
|
CE1
|
C:HIS51
|
3.1
|
41.7
|
1.0
|
CD
|
A:GLU82
|
3.1
|
35.4
|
1.0
|
HZ1
|
C:LYS48
|
3.1
|
34.7
|
1.0
|
HE1
|
C:HIS51
|
3.3
|
50.1
|
1.0
|
NZ
|
C:LYS48
|
3.4
|
28.9
|
1.0
|
HD1
|
C:TRP52
|
3.5
|
29.5
|
1.0
|
HE1
|
C:TRP52
|
3.5
|
29.4
|
1.0
|
HG3
|
A:GLU82
|
3.6
|
36.8
|
1.0
|
HE1
|
C:HIS63
|
3.6
|
27.9
|
1.0
|
HZ2
|
C:LYS48
|
3.7
|
34.7
|
1.0
|
CG
|
A:GLU82
|
3.8
|
30.7
|
1.0
|
HG2
|
A:GLU82
|
4.0
|
36.8
|
1.0
|
CD1
|
C:TRP52
|
4.0
|
24.6
|
1.0
|
OE1
|
A:GLU82
|
4.0
|
36.4
|
1.0
|
NE1
|
C:TRP52
|
4.0
|
24.5
|
1.0
|
CE1
|
C:HIS63
|
4.1
|
23.3
|
1.0
|
NE2
|
C:HIS63
|
4.1
|
21.4
|
1.0
|
CG
|
C:HIS51
|
4.1
|
40.4
|
1.0
|
ND1
|
C:HIS51
|
4.2
|
41.4
|
1.0
|
OD2
|
C:ASP67
|
4.2
|
35.5
|
1.0
|
CB
|
A:ASP78
|
4.4
|
21.0
|
1.0
|
OD1
|
C:ASP67
|
4.6
|
36.4
|
1.0
|
HH2
|
E:TRP160
|
4.6
|
26.7
|
1.0
|
HD3
|
C:LYS48
|
4.7
|
34.4
|
1.0
|
HD2
|
C:LYS48
|
4.7
|
34.4
|
1.0
|
HB3
|
A:ASP78
|
4.7
|
25.2
|
1.0
|
CE
|
C:LYS48
|
4.7
|
28.6
|
1.0
|
CG
|
C:ASP67
|
4.8
|
35.6
|
1.0
|
HB2
|
A:ASP78
|
4.9
|
25.2
|
1.0
|
O
|
A:ASP78
|
4.9
|
21.6
|
1.0
|
CD
|
C:LYS48
|
4.9
|
28.7
|
1.0
|
HD1
|
C:HIS51
|
5.0
|
49.6
|
1.0
|
HA
|
A:ASP78
|
5.0
|
25.5
|
1.0
|
|
Iron binding site 2 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 2 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:23.3
occ:0.88
|
OE2
|
B:GLU82
|
2.0
|
38.6
|
1.0
|
NE2
|
D:HIS51
|
2.1
|
32.6
|
1.0
|
OD2
|
B:ASP78
|
2.4
|
21.0
|
1.0
|
OD1
|
B:ASP78
|
2.6
|
22.3
|
1.0
|
CG
|
B:ASP78
|
2.9
|
21.6
|
1.0
|
CD2
|
D:HIS51
|
3.0
|
31.1
|
1.0
|
CD
|
B:GLU82
|
3.0
|
36.0
|
1.0
|
HD2
|
D:HIS51
|
3.1
|
37.4
|
1.0
|
CE1
|
D:HIS51
|
3.2
|
32.3
|
1.0
|
HZ2
|
D:LYS48
|
3.3
|
40.5
|
1.0
|
HZ3
|
D:LYS48
|
3.3
|
40.5
|
1.0
|
HE1
|
D:HIS51
|
3.4
|
38.7
|
1.0
|
HD1
|
D:TRP52
|
3.5
|
25.4
|
1.0
|
HE1
|
D:HIS63
|
3.5
|
33.8
|
1.0
|
HE1
|
D:TRP52
|
3.5
|
24.9
|
1.0
|
HG3
|
B:GLU82
|
3.5
|
35.8
|
1.0
|
NZ
|
D:LYS48
|
3.7
|
33.7
|
1.0
|
CG
|
B:GLU82
|
3.8
|
29.8
|
1.0
|
HG2
|
B:GLU82
|
3.9
|
35.8
|
1.0
|
HZ1
|
D:LYS48
|
4.0
|
40.5
|
1.0
|
OE1
|
B:GLU82
|
4.0
|
37.1
|
1.0
|
CE1
|
D:HIS63
|
4.0
|
28.2
|
1.0
|
CD1
|
D:TRP52
|
4.0
|
21.1
|
1.0
|
NE1
|
D:TRP52
|
4.0
|
20.7
|
1.0
|
NE2
|
D:HIS63
|
4.1
|
27.0
|
1.0
|
CG
|
D:HIS51
|
4.2
|
29.9
|
1.0
|
ND1
|
D:HIS51
|
4.2
|
31.3
|
1.0
|
OD2
|
D:ASP67
|
4.2
|
33.6
|
1.0
|
CB
|
B:ASP78
|
4.4
|
18.5
|
1.0
|
HH2
|
G:TRP160
|
4.5
|
21.2
|
1.0
|
OD1
|
D:ASP67
|
4.7
|
34.1
|
1.0
|
HB3
|
B:ASP78
|
4.7
|
22.2
|
1.0
|
HD3
|
D:LYS48
|
4.8
|
38.1
|
1.0
|
HB2
|
B:ASP78
|
4.8
|
22.2
|
1.0
|
CG
|
D:ASP67
|
4.9
|
32.3
|
1.0
|
HA
|
B:ASP78
|
4.9
|
24.9
|
1.0
|
O
|
B:ASP78
|
4.9
|
21.3
|
1.0
|
HD2
|
D:LYS48
|
5.0
|
38.1
|
1.0
|
CE
|
D:LYS48
|
5.0
|
31.8
|
1.0
|
|
Iron binding site 3 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 3 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:16.0
occ:0.79
|
NE2
|
A:HIS51
|
2.0
|
24.5
|
1.0
|
OE2
|
C:GLU82
|
2.0
|
32.2
|
1.0
|
OD2
|
C:ASP78
|
2.6
|
24.6
|
1.0
|
OD1
|
C:ASP78
|
2.6
|
23.8
|
1.0
|
CG
|
C:ASP78
|
2.9
|
23.6
|
1.0
|
CD2
|
A:HIS51
|
3.0
|
23.7
|
1.0
|
CE1
|
A:HIS51
|
3.0
|
23.2
|
1.0
|
CD
|
C:GLU82
|
3.1
|
29.7
|
1.0
|
HD2
|
A:HIS51
|
3.1
|
28.4
|
1.0
|
HE1
|
A:HIS51
|
3.2
|
27.9
|
1.0
|
HZ1
|
A:LYS48
|
3.2
|
36.0
|
1.0
|
HZ3
|
A:LYS48
|
3.3
|
36.0
|
1.0
|
HE1
|
A:HIS63
|
3.4
|
32.8
|
1.0
|
HE1
|
A:TRP52
|
3.4
|
30.0
|
1.0
|
HD1
|
A:TRP52
|
3.4
|
30.1
|
1.0
|
HG3
|
C:GLU82
|
3.6
|
34.0
|
1.0
|
NZ
|
A:LYS48
|
3.6
|
30.0
|
1.0
|
CG
|
C:GLU82
|
3.8
|
28.4
|
1.0
|
CE1
|
A:HIS63
|
3.9
|
27.3
|
1.0
|
HG2
|
C:GLU82
|
3.9
|
34.0
|
1.0
|
NE1
|
A:TRP52
|
3.9
|
25.0
|
1.0
|
HZ2
|
A:LYS48
|
3.9
|
36.0
|
1.0
|
CD1
|
A:TRP52
|
4.0
|
25.1
|
1.0
|
NE2
|
A:HIS63
|
4.0
|
26.6
|
1.0
|
OE1
|
C:GLU82
|
4.0
|
28.7
|
1.0
|
ND1
|
A:HIS51
|
4.1
|
22.9
|
1.0
|
CG
|
A:HIS51
|
4.1
|
23.4
|
1.0
|
OD2
|
A:ASP67
|
4.4
|
35.4
|
1.0
|
CB
|
C:ASP78
|
4.5
|
23.7
|
1.0
|
HH2
|
H:TRP160
|
4.6
|
39.2
|
1.0
|
OD1
|
A:ASP67
|
4.6
|
35.3
|
1.0
|
HD3
|
A:LYS48
|
4.8
|
35.9
|
1.0
|
HB3
|
C:ASP78
|
4.8
|
28.4
|
1.0
|
HD1
|
A:HIS51
|
4.9
|
27.5
|
1.0
|
HB2
|
C:ASP78
|
4.9
|
28.4
|
1.0
|
CG
|
A:ASP67
|
4.9
|
34.3
|
1.0
|
HA
|
C:ASP78
|
5.0
|
29.6
|
1.0
|
CE
|
A:LYS48
|
5.0
|
29.8
|
1.0
|
O
|
C:ASP78
|
5.0
|
25.4
|
1.0
|
HD2
|
A:LYS48
|
5.0
|
35.9
|
1.0
|
ND1
|
A:HIS63
|
5.0
|
27.2
|
1.0
|
|
Iron binding site 4 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 4 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:21.3
occ:0.84
|
OE2
|
D:GLU82
|
2.0
|
41.5
|
1.0
|
NE2
|
B:HIS51
|
2.0
|
43.3
|
1.0
|
OD1
|
D:ASP78
|
2.4
|
26.4
|
1.0
|
OD2
|
D:ASP78
|
2.8
|
26.4
|
1.0
|
CD2
|
B:HIS51
|
2.9
|
44.8
|
1.0
|
CG
|
D:ASP78
|
2.9
|
25.9
|
1.0
|
CD
|
D:GLU82
|
3.0
|
39.0
|
1.0
|
HZ3
|
B:LYS48
|
3.1
|
38.8
|
1.0
|
HD2
|
B:HIS51
|
3.1
|
53.7
|
1.0
|
CE1
|
B:HIS51
|
3.1
|
44.0
|
1.0
|
HE1
|
B:HIS51
|
3.3
|
52.8
|
1.0
|
HZ2
|
B:LYS48
|
3.3
|
38.8
|
1.0
|
HD1
|
B:TRP52
|
3.5
|
28.0
|
1.0
|
HE1
|
B:TRP52
|
3.5
|
28.6
|
1.0
|
HE1
|
B:HIS63
|
3.5
|
43.6
|
1.0
|
NZ
|
B:LYS48
|
3.6
|
32.4
|
1.0
|
HG3
|
D:GLU82
|
3.6
|
42.1
|
1.0
|
CG
|
D:GLU82
|
3.8
|
35.1
|
1.0
|
HZ1
|
B:LYS48
|
3.8
|
38.8
|
1.0
|
OE1
|
D:GLU82
|
3.9
|
41.4
|
1.0
|
CE1
|
B:HIS63
|
3.9
|
36.3
|
1.0
|
NE2
|
B:HIS63
|
3.9
|
35.4
|
1.0
|
HG2
|
D:GLU82
|
4.0
|
42.1
|
1.0
|
NE1
|
B:TRP52
|
4.0
|
23.8
|
1.0
|
CD1
|
B:TRP52
|
4.0
|
23.3
|
1.0
|
CG
|
B:HIS51
|
4.1
|
43.3
|
1.0
|
ND1
|
B:HIS51
|
4.1
|
44.1
|
1.0
|
OD2
|
B:ASP67
|
4.3
|
36.3
|
1.0
|
CB
|
D:ASP78
|
4.5
|
25.6
|
1.0
|
OD1
|
B:ASP67
|
4.5
|
35.2
|
1.0
|
HH2
|
F:TRP160
|
4.6
|
32.0
|
1.0
|
HD3
|
B:LYS48
|
4.8
|
37.9
|
1.0
|
HB2
|
D:ASP78
|
4.8
|
30.7
|
1.0
|
CG
|
B:ASP67
|
4.8
|
34.2
|
1.0
|
CE
|
B:LYS48
|
4.9
|
32.3
|
1.0
|
HA
|
D:ASP78
|
4.9
|
25.6
|
1.0
|
HB3
|
D:ASP78
|
4.9
|
30.7
|
1.0
|
HD1
|
B:HIS51
|
4.9
|
53.0
|
1.0
|
|
Iron binding site 5 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 5 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:17.4
occ:0.95
|
OE2
|
E:GLU82
|
2.1
|
33.4
|
1.0
|
NE2
|
G:HIS51
|
2.1
|
23.1
|
1.0
|
OD2
|
E:ASP78
|
2.6
|
24.8
|
1.0
|
OD1
|
E:ASP78
|
2.9
|
23.4
|
1.0
|
CE1
|
G:HIS51
|
3.0
|
23.6
|
1.0
|
CD2
|
G:HIS51
|
3.1
|
21.8
|
1.0
|
CG
|
E:ASP78
|
3.1
|
22.8
|
1.0
|
HZ2
|
G:LYS48
|
3.1
|
33.5
|
1.0
|
CD
|
E:GLU82
|
3.1
|
31.7
|
1.0
|
HE1
|
G:HIS51
|
3.2
|
28.4
|
1.0
|
HD2
|
G:HIS51
|
3.3
|
26.1
|
1.0
|
HZ3
|
G:LYS48
|
3.3
|
33.5
|
1.0
|
HE1
|
G:HIS63
|
3.4
|
28.8
|
1.0
|
HD1
|
G:TRP52
|
3.5
|
20.8
|
1.0
|
HE1
|
G:TRP52
|
3.6
|
20.8
|
1.0
|
NZ
|
G:LYS48
|
3.6
|
27.9
|
1.0
|
HG3
|
E:GLU82
|
3.7
|
35.1
|
1.0
|
HZ1
|
G:LYS48
|
3.9
|
33.5
|
1.0
|
CE1
|
G:HIS63
|
3.9
|
24.0
|
1.0
|
CG
|
E:GLU82
|
3.9
|
29.3
|
1.0
|
NE2
|
G:HIS63
|
4.0
|
24.1
|
1.0
|
HG2
|
E:GLU82
|
4.0
|
35.1
|
1.0
|
OE1
|
E:GLU82
|
4.0
|
31.5
|
1.0
|
CD1
|
G:TRP52
|
4.1
|
17.3
|
1.0
|
NE1
|
G:TRP52
|
4.1
|
17.3
|
1.0
|
ND1
|
G:HIS51
|
4.2
|
22.8
|
1.0
|
CG
|
G:HIS51
|
4.2
|
22.0
|
1.0
|
OD2
|
G:ASP67
|
4.3
|
27.4
|
1.0
|
HH2
|
I:TRP160
|
4.5
|
24.8
|
1.0
|
CB
|
E:ASP78
|
4.6
|
19.5
|
1.0
|
OD1
|
G:ASP67
|
4.6
|
27.8
|
1.0
|
HD3
|
G:LYS48
|
4.8
|
28.9
|
1.0
|
HB3
|
E:ASP78
|
4.9
|
23.4
|
1.0
|
CG
|
G:ASP67
|
4.9
|
26.8
|
1.0
|
CE
|
G:LYS48
|
4.9
|
25.2
|
1.0
|
HD1
|
G:HIS51
|
4.9
|
27.3
|
1.0
|
O
|
E:ASP78
|
4.9
|
16.5
|
1.0
|
HD2
|
G:LYS48
|
5.0
|
28.9
|
1.0
|
|
Iron binding site 6 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 6 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe201
b:20.1
occ:0.82
|
OE2
|
F:GLU82
|
1.9
|
39.4
|
1.0
|
NE2
|
H:HIS51
|
1.9
|
41.9
|
1.0
|
OD2
|
F:ASP78
|
2.5
|
33.5
|
1.0
|
OD1
|
F:ASP78
|
2.7
|
34.4
|
1.0
|
CD2
|
H:HIS51
|
2.9
|
41.4
|
1.0
|
CG
|
F:ASP78
|
3.0
|
32.7
|
1.0
|
CE1
|
H:HIS51
|
3.0
|
42.1
|
1.0
|
CD
|
F:GLU82
|
3.0
|
36.4
|
1.0
|
HD2
|
H:HIS51
|
3.1
|
49.6
|
1.0
|
HZ3
|
H:LYS48
|
3.2
|
44.5
|
1.0
|
HZ1
|
H:LYS48
|
3.2
|
44.5
|
1.0
|
HE1
|
H:HIS51
|
3.2
|
50.5
|
1.0
|
HD1
|
H:TRP52
|
3.4
|
41.6
|
1.0
|
HE1
|
H:TRP52
|
3.4
|
41.5
|
1.0
|
HE1
|
H:HIS63
|
3.5
|
42.4
|
1.0
|
HG3
|
F:GLU82
|
3.6
|
39.8
|
1.0
|
NZ
|
H:LYS48
|
3.6
|
37.0
|
1.0
|
CG
|
F:GLU82
|
3.8
|
33.2
|
1.0
|
HG2
|
F:GLU82
|
3.9
|
39.8
|
1.0
|
HZ2
|
H:LYS48
|
3.9
|
44.5
|
1.0
|
NE1
|
H:TRP52
|
3.9
|
34.5
|
1.0
|
CD1
|
H:TRP52
|
3.9
|
34.7
|
1.0
|
OE1
|
F:GLU82
|
4.0
|
37.8
|
1.0
|
CE1
|
H:HIS63
|
4.0
|
35.3
|
1.0
|
OD2
|
H:ASP67
|
4.0
|
39.7
|
1.0
|
ND1
|
H:HIS51
|
4.1
|
41.6
|
1.0
|
CG
|
H:HIS51
|
4.1
|
41.0
|
1.0
|
NE2
|
H:HIS63
|
4.1
|
34.8
|
1.0
|
CB
|
F:ASP78
|
4.5
|
29.2
|
1.0
|
OD1
|
H:ASP67
|
4.5
|
39.8
|
1.0
|
HH2
|
K:TRP160
|
4.6
|
46.1
|
1.0
|
CG
|
H:ASP67
|
4.7
|
38.7
|
1.0
|
HD3
|
H:LYS48
|
4.8
|
41.5
|
1.0
|
HB3
|
F:ASP78
|
4.8
|
35.0
|
1.0
|
HD1
|
H:HIS51
|
4.8
|
50.0
|
1.0
|
O
|
F:ASP78
|
4.9
|
32.8
|
1.0
|
HD2
|
H:LYS48
|
4.9
|
41.5
|
1.0
|
CE
|
H:LYS48
|
4.9
|
35.6
|
1.0
|
HB2
|
F:ASP78
|
4.9
|
35.0
|
1.0
|
HA
|
F:ASP78
|
4.9
|
35.0
|
1.0
|
HA
|
H:TRP52
|
5.0
|
41.1
|
1.0
|
|
Iron binding site 7 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 7 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:25.0
occ:0.92
|
OE2
|
G:GLU82
|
2.0
|
36.0
|
1.0
|
NE2
|
E:HIS51
|
2.1
|
31.8
|
1.0
|
OD2
|
G:ASP78
|
2.4
|
27.9
|
1.0
|
OD1
|
G:ASP78
|
2.6
|
26.4
|
1.0
|
CG
|
G:ASP78
|
2.8
|
24.8
|
1.0
|
HZ2
|
E:LYS48
|
3.0
|
34.9
|
1.0
|
CD
|
G:GLU82
|
3.0
|
31.9
|
1.0
|
CD2
|
E:HIS51
|
3.0
|
31.0
|
1.0
|
HZ3
|
E:LYS48
|
3.1
|
34.9
|
1.0
|
CE1
|
E:HIS51
|
3.1
|
31.5
|
1.0
|
HD2
|
E:HIS51
|
3.2
|
37.2
|
1.0
|
HE1
|
E:HIS51
|
3.4
|
37.8
|
1.0
|
NZ
|
E:LYS48
|
3.4
|
29.1
|
1.0
|
HD1
|
E:TRP52
|
3.5
|
21.6
|
1.0
|
HE1
|
E:TRP52
|
3.6
|
23.0
|
1.0
|
HZ1
|
E:LYS48
|
3.6
|
34.9
|
1.0
|
HG3
|
G:GLU82
|
3.7
|
33.1
|
1.0
|
HE1
|
E:HIS63
|
3.7
|
30.1
|
1.0
|
OE1
|
G:GLU82
|
3.8
|
33.5
|
1.0
|
CG
|
G:GLU82
|
3.9
|
27.6
|
1.0
|
HG2
|
G:GLU82
|
4.1
|
33.1
|
1.0
|
NE1
|
E:TRP52
|
4.1
|
19.2
|
1.0
|
CD1
|
E:TRP52
|
4.1
|
18.0
|
1.0
|
CE1
|
E:HIS63
|
4.2
|
25.1
|
1.0
|
CG
|
E:HIS51
|
4.2
|
29.7
|
1.0
|
NE2
|
E:HIS63
|
4.2
|
24.9
|
1.0
|
ND1
|
E:HIS51
|
4.2
|
30.6
|
1.0
|
CB
|
G:ASP78
|
4.3
|
20.9
|
1.0
|
OD2
|
E:ASP67
|
4.4
|
27.2
|
1.0
|
OD1
|
E:ASP67
|
4.6
|
27.2
|
1.0
|
HB3
|
G:ASP78
|
4.7
|
25.1
|
1.0
|
HH2
|
L:TRP160
|
4.7
|
31.4
|
1.0
|
CE
|
E:LYS48
|
4.8
|
28.6
|
1.0
|
HB2
|
G:ASP78
|
4.8
|
25.1
|
1.0
|
HD3
|
E:LYS48
|
4.8
|
33.7
|
1.0
|
HA
|
G:ASP78
|
4.8
|
25.1
|
1.0
|
O
|
G:ASP78
|
4.8
|
24.0
|
1.0
|
HD2
|
E:LYS48
|
4.8
|
33.7
|
1.0
|
CG
|
E:ASP67
|
5.0
|
25.4
|
1.0
|
|
Iron binding site 8 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 8 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:18.0
occ:0.77
|
OE2
|
H:GLU82
|
1.9
|
36.9
|
1.0
|
NE2
|
F:HIS51
|
2.1
|
34.8
|
1.0
|
OD2
|
H:ASP78
|
2.5
|
30.5
|
1.0
|
OD1
|
H:ASP78
|
2.7
|
30.2
|
1.0
|
CD2
|
F:HIS51
|
3.0
|
34.8
|
1.0
|
CG
|
H:ASP78
|
3.0
|
29.8
|
1.0
|
CD
|
H:GLU82
|
3.0
|
33.6
|
1.0
|
HD2
|
F:HIS51
|
3.1
|
41.8
|
1.0
|
CE1
|
F:HIS51
|
3.1
|
34.0
|
1.0
|
HZ1
|
F:LYS48
|
3.1
|
46.4
|
1.0
|
HE1
|
F:TRP52
|
3.3
|
30.4
|
1.0
|
HE1
|
F:HIS51
|
3.3
|
40.8
|
1.0
|
HD1
|
F:TRP52
|
3.5
|
30.2
|
1.0
|
HZ3
|
F:LYS48
|
3.5
|
46.4
|
1.0
|
HE1
|
F:HIS63
|
3.6
|
27.6
|
1.0
|
NZ
|
F:LYS48
|
3.7
|
38.7
|
1.0
|
HG3
|
H:GLU82
|
3.7
|
35.4
|
1.0
|
OE1
|
H:GLU82
|
3.8
|
35.5
|
1.0
|
CG
|
H:GLU82
|
3.8
|
29.5
|
1.0
|
NE1
|
F:TRP52
|
3.8
|
25.4
|
1.0
|
HZ2
|
F:LYS48
|
3.8
|
46.4
|
1.0
|
CD1
|
F:TRP52
|
3.9
|
25.2
|
1.0
|
HG2
|
H:GLU82
|
4.0
|
35.4
|
1.0
|
CE1
|
F:HIS63
|
4.0
|
23.0
|
1.0
|
NE2
|
F:HIS63
|
4.1
|
21.7
|
1.0
|
CG
|
F:HIS51
|
4.1
|
34.3
|
1.0
|
ND1
|
F:HIS51
|
4.2
|
34.1
|
1.0
|
OD2
|
F:ASP67
|
4.2
|
38.4
|
1.0
|
CB
|
H:ASP78
|
4.5
|
27.7
|
1.0
|
OD1
|
F:ASP67
|
4.6
|
39.6
|
1.0
|
HH2
|
J:TRP160
|
4.7
|
24.9
|
1.0
|
CG
|
F:ASP67
|
4.8
|
36.5
|
1.0
|
HB3
|
H:ASP78
|
4.8
|
33.2
|
1.0
|
O
|
H:ASP78
|
4.9
|
23.9
|
1.0
|
HD3
|
F:LYS48
|
4.9
|
44.8
|
1.0
|
HB2
|
H:ASP78
|
5.0
|
33.2
|
1.0
|
HD1
|
F:HIS51
|
5.0
|
41.0
|
1.0
|
HA
|
H:ASP78
|
5.0
|
29.1
|
1.0
|
|
Iron binding site 9 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 9 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe201
b:25.3
occ:0.92
|
OE2
|
I:GLU82
|
1.9
|
31.3
|
1.0
|
NE2
|
K:HIS51
|
2.2
|
26.0
|
1.0
|
OD2
|
I:ASP78
|
2.4
|
32.6
|
1.0
|
OD1
|
I:ASP78
|
2.7
|
32.4
|
1.0
|
CG
|
I:ASP78
|
2.9
|
30.8
|
1.0
|
CD
|
I:GLU82
|
3.0
|
27.5
|
1.0
|
CD2
|
K:HIS51
|
3.0
|
26.4
|
1.0
|
HD2
|
K:HIS51
|
3.1
|
31.6
|
1.0
|
HZ3
|
K:LYS48
|
3.2
|
44.1
|
1.0
|
CE1
|
K:HIS51
|
3.3
|
26.0
|
1.0
|
HE1
|
K:TRP52
|
3.3
|
29.6
|
1.0
|
HZ1
|
K:LYS48
|
3.3
|
44.1
|
1.0
|
HD1
|
K:TRP52
|
3.4
|
29.1
|
1.0
|
HG3
|
I:GLU82
|
3.5
|
28.4
|
1.0
|
HE1
|
K:HIS51
|
3.6
|
31.2
|
1.0
|
HE1
|
K:HIS63
|
3.6
|
32.7
|
1.0
|
NZ
|
K:LYS48
|
3.7
|
36.7
|
1.0
|
CG
|
I:GLU82
|
3.7
|
23.6
|
1.0
|
NE1
|
K:TRP52
|
3.8
|
24.7
|
1.0
|
OE1
|
I:GLU82
|
3.9
|
28.3
|
1.0
|
CD1
|
K:TRP52
|
3.9
|
24.3
|
1.0
|
HG2
|
I:GLU82
|
3.9
|
28.4
|
1.0
|
HZ2
|
K:LYS48
|
3.9
|
44.1
|
1.0
|
CE1
|
K:HIS63
|
4.0
|
27.3
|
1.0
|
NE2
|
K:HIS63
|
4.1
|
25.9
|
1.0
|
CG
|
K:HIS51
|
4.2
|
26.6
|
1.0
|
OD2
|
K:ASP67
|
4.3
|
39.9
|
1.0
|
ND1
|
K:HIS51
|
4.3
|
26.4
|
1.0
|
CB
|
I:ASP78
|
4.4
|
26.4
|
1.0
|
HH2
|
A:TRP160
|
4.5
|
22.6
|
1.0
|
OD1
|
K:ASP67
|
4.6
|
39.0
|
1.0
|
HB3
|
I:ASP78
|
4.7
|
31.6
|
1.0
|
O
|
I:ASP78
|
4.7
|
23.3
|
1.0
|
HA
|
I:ASP78
|
4.8
|
28.3
|
1.0
|
HD3
|
K:LYS48
|
4.8
|
41.0
|
1.0
|
HB2
|
I:ASP78
|
4.9
|
31.6
|
1.0
|
HD2
|
K:LYS48
|
4.9
|
41.0
|
1.0
|
CG
|
K:ASP67
|
4.9
|
38.9
|
1.0
|
CE
|
K:LYS48
|
5.0
|
34.9
|
1.0
|
|
Iron binding site 10 out
of 24 in 7aqs
Go back to
Iron Binding Sites List in 7aqs
Iron binding site 10 out
of 24 in the Crystal Structure of E. Coli Dps in Space Group P1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of E. Coli Dps in Space Group P1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe201
b:17.6
occ:0.79
|
OE2
|
J:GLU82
|
1.9
|
38.5
|
1.0
|
NE2
|
L:HIS51
|
2.0
|
34.6
|
1.0
|
OD2
|
J:ASP78
|
2.4
|
29.3
|
1.0
|
OD1
|
J:ASP78
|
2.7
|
29.9
|
1.0
|
CG
|
J:ASP78
|
2.9
|
28.7
|
1.0
|
CE1
|
L:HIS51
|
3.0
|
35.1
|
1.0
|
CD
|
J:GLU82
|
3.0
|
35.6
|
1.0
|
CD2
|
L:HIS51
|
3.1
|
32.2
|
1.0
|
HE1
|
L:HIS51
|
3.1
|
42.1
|
1.0
|
O
|
J:HOH311
|
3.2
|
26.5
|
1.0
|
HZ1
|
L:LYS48
|
3.3
|
32.3
|
1.0
|
HD2
|
L:HIS51
|
3.3
|
38.7
|
1.0
|
HE1
|
L:HIS63
|
3.5
|
34.3
|
1.0
|
HD1
|
L:TRP52
|
3.5
|
29.1
|
1.0
|
HZ3
|
L:LYS48
|
3.5
|
32.3
|
1.0
|
HG3
|
J:GLU82
|
3.6
|
37.5
|
1.0
|
HE1
|
L:TRP52
|
3.6
|
29.2
|
1.0
|
CG
|
J:GLU82
|
3.7
|
31.2
|
1.0
|
NZ
|
L:LYS48
|
3.8
|
26.9
|
1.0
|
HG2
|
J:GLU82
|
3.9
|
37.5
|
1.0
|
OE1
|
J:GLU82
|
3.9
|
38.0
|
1.0
|
CE1
|
L:HIS63
|
3.9
|
28.6
|
1.0
|
NE2
|
L:HIS63
|
4.0
|
28.4
|
1.0
|
HZ2
|
L:LYS48
|
4.1
|
32.3
|
1.0
|
ND1
|
L:HIS51
|
4.1
|
33.8
|
1.0
|
CD1
|
L:TRP52
|
4.1
|
24.2
|
1.0
|
NE1
|
L:TRP52
|
4.1
|
24.4
|
1.0
|
CG
|
L:HIS51
|
4.2
|
32.5
|
1.0
|
O
|
J:HOH303
|
4.2
|
21.1
|
1.0
|
OD2
|
L:ASP67
|
4.2
|
34.4
|
1.0
|
CB
|
J:ASP78
|
4.4
|
26.5
|
1.0
|
HH2
|
C:TRP160
|
4.6
|
32.1
|
1.0
|
OD1
|
L:ASP67
|
4.6
|
34.3
|
1.0
|
HB3
|
J:ASP78
|
4.8
|
31.8
|
1.0
|
CG
|
L:ASP67
|
4.8
|
32.9
|
1.0
|
HD1
|
L:HIS51
|
4.9
|
40.5
|
1.0
|
HB2
|
J:ASP78
|
4.9
|
31.8
|
1.0
|
O
|
J:ASP78
|
4.9
|
28.9
|
1.0
|
HA
|
J:ASP78
|
4.9
|
31.3
|
1.0
|
HD3
|
L:LYS48
|
5.0
|
30.7
|
1.0
|
|
Reference:
J.Pipercevic,
R.P.Jakob,
R.D.Righetto,
K.N.Goldie,
H.Stahlberg,
T.Maier,
S.Hiller.
Identification of A Dps Contamination in Mitomycin-C-Induced Expression of Colicin Ia. Biochim Biophys Acta V.1863 83607 2021BIOMEMBR.
ISSN: ESSN 1879-2642
PubMed: 33775657
DOI: 10.1016/J.BBAMEM.2021.183607
Page generated: Wed Aug 7 22:34:05 2024
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