Atomistry » Iron » PDB 7ai8-7bha » 7arb
Atomistry »
  Iron »
    PDB 7ai8-7bha »
      7arb »

Iron in PDB 7arb: Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)

Enzymatic activity of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)

All present enzymatic activity of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition):
7.1.1.2;

Other elements in 7arb:

The structure of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 29;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) (pdb code 7arb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 29 binding sites of Iron where determined in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition), PDB code: 7arb:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 1 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:32.7
occ:1.00
 FE1 B:SF4500 0.0 32.7 1.0
SG B:CYS158 2.3 25.3 1.0
S3 B:SF4500 2.3 32.7 1.0
S2 B:SF4500 2.3 32.7 1.0
S4 B:SF4500 2.3 32.7 1.0
CB B:CYS158 2.7 25.3 1.0
FE4 B:SF4500 2.7 32.7 1.0
FE3 B:SF4500 2.7 32.7 1.0
FE2 B:SF4500 2.7 32.7 1.0
N B:CYS158 3.6 25.3 1.0
CA B:CYS158 3.7 25.3 1.0
S1 B:SF4500 3.9 32.7 1.0
OG1 B:THR130 3.9 28.5 1.0
SG B:CYS188 4.7 29.7 1.0
N B:THR130 4.8 28.5 1.0
C B:SER157 4.8 28.2 1.0
SG B:CYS94 4.8 32.6 1.0
SG B:CYS93 4.9 34.0 1.0
N B:SER157 4.9 28.2 1.0
C B:GLY129 5.0 28.0 1.0
C B:CYS158 5.0 25.3 1.0

Iron binding site 2 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 2 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:32.7
occ:1.00
 FE2 B:SF4500 0.0 32.7 1.0
SG B:CYS94 2.3 32.6 1.0
S1 B:SF4500 2.3 32.7 1.0
S4 B:SF4500 2.3 32.7 1.0
S3 B:SF4500 2.3 32.7 1.0
FE4 B:SF4500 2.7 32.7 1.0
FE3 B:SF4500 2.7 32.7 1.0
FE1 B:SF4500 2.7 32.7 1.0
CB B:CYS94 3.7 32.6 1.0
S2 B:SF4500 3.9 32.7 1.0
SG B:CYS93 3.9 34.0 1.0
N B:CYS94 4.0 32.6 1.0
CA B:CYS94 4.3 32.6 1.0
CA B:GLY156 4.4 26.0 1.0
CA B:PRO189 4.5 29.6 1.0
CB B:PRO189 4.7 29.6 1.0
CB B:CYS158 4.7 25.3 1.0
CA B:CYS188 4.7 29.7 1.0
C B:CYS93 4.8 34.0 1.0
SG B:CYS188 4.8 29.7 1.0
N B:SER157 4.8 28.2 1.0
N B:CYS158 4.9 25.3 1.0
CD B:PRO190 4.9 29.2 1.0
SG B:CYS158 4.9 25.3 1.0

Iron binding site 3 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 3 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:32.7
occ:1.00
 FE3 B:SF4500 0.0 32.7 1.0
SG B:CYS188 2.3 29.7 1.0
S1 B:SF4500 2.3 32.7 1.0
S2 B:SF4500 2.3 32.7 1.0
S4 B:SF4500 2.3 32.7 1.0
FE1 B:SF4500 2.7 32.7 1.0
FE4 B:SF4500 2.7 32.7 1.0
FE2 B:SF4500 2.7 32.7 1.0
CB B:CYS188 3.3 29.7 1.0
CA B:CYS188 3.5 29.7 1.0
S3 B:SF4500 3.9 32.7 1.0
C B:CYS188 3.9 29.7 1.0
SG B:CYS93 4.2 34.0 1.0
O B:CYS188 4.4 29.7 1.0
N B:PRO189 4.4 29.6 1.0
NE D:ARG69 4.4 30.7 1.0
SG B:CYS158 4.6 25.3 1.0
CD2 D:HIS154 4.7 34.5 1.0
CA B:PRO189 4.7 29.6 1.0
O B:GLY187 4.7 28.8 1.0
SG B:CYS94 4.8 32.6 1.0
N B:CYS188 4.8 29.7 1.0
NE2 D:HIS154 4.8 34.5 1.0
NH2 D:ARG69 4.9 30.7 1.0
N B:SER157 5.0 28.2 1.0

Iron binding site 4 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 4 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:32.7
occ:1.00
 FE4 B:SF4500 0.0 32.7 1.0
SG B:CYS93 2.2 34.0 1.0
S2 B:SF4500 2.3 32.7 1.0
S3 B:SF4500 2.3 32.7 1.0
S1 B:SF4500 2.3 32.7 1.0
FE1 B:SF4500 2.7 32.7 1.0
FE3 B:SF4500 2.7 32.7 1.0
FE2 B:SF4500 2.7 32.7 1.0
S4 B:SF4500 3.9 32.7 1.0
CB B:CYS93 3.9 34.0 1.0
NE2 D:HIS154 4.1 34.5 1.0
N B:CYS93 4.2 34.0 1.0
CG D:ARG69 4.4 30.7 1.0
CA B:CYS93 4.5 34.0 1.0
CB B:ALA92 4.5 32.4 1.0
N B:CYS94 4.6 32.6 1.0
SG B:CYS158 4.6 25.3 1.0
SG B:CYS94 4.7 32.6 1.0
SG B:CYS188 4.7 29.7 1.0
CD2 D:HIS154 4.8 34.5 1.0
C B:CYS93 4.8 34.0 1.0
CB D:ARG69 5.0 30.7 1.0
NH1 D:ARG49 5.0 27.4 1.0

Iron binding site 5 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 5 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe500

b:96.8
occ:1.00
 FE1 E:FES500 0.0 96.8 1.0
S2 E:FES500 2.2 96.8 1.0
S1 E:FES500 2.2 96.8 1.0
SD E:MET169 2.3 73.8 1.0
SG E:CYS171 2.3 74.0 1.0
CE E:MET169 2.4 73.8 1.0
FE2 E:FES500 2.7 96.8 1.0
CG E:MET169 3.4 73.8 1.0
CB E:CYS171 3.6 74.0 1.0
CA E:GLY131 4.1 87.5 1.0
CA E:CYS171 4.1 74.0 1.0
O E:MET180 4.1 76.7 1.0
SG E:CYS135 4.2 87.5 1.0
CB E:MET180 4.3 76.7 1.0
CE E:MET180 4.3 76.7 1.0
N E:CYS171 4.6 74.0 1.0
CB E:MET169 4.7 73.8 1.0
O E:VAL129 4.7 72.6 1.0
CB E:CYS135 4.8 87.5 1.0
C E:MET180 4.8 76.7 1.0
C E:GLY131 4.8 87.5 1.0
O E:ALA178 4.8 83.7 1.0
O E:CYS130 4.9 80.3 1.0
N E:GLY131 4.9 87.5 1.0
CA E:MET180 5.0 76.7 1.0
SG E:CYS175 5.0 82.4 1.0

Iron binding site 6 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 6 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe500

b:96.8
occ:1.00
 FE2 E:FES500 0.0 96.8 1.0
S1 E:FES500 2.2 96.8 1.0
S2 E:FES500 2.2 96.8 1.0
CE E:MET180 2.5 76.7 1.0
FE1 E:FES500 2.7 96.8 1.0
SG E:CYS175 2.7 82.4 1.0
CB E:CYS135 3.0 87.5 1.0
SG E:CYS135 3.1 87.5 1.0
SG E:CYS171 3.3 74.0 1.0
CB E:CYS175 3.4 82.4 1.0
CB E:CYS171 3.7 74.0 1.0
O E:ALA178 4.0 83.7 1.0
SD E:MET180 4.2 76.7 1.0
CB E:MET180 4.4 76.7 1.0
CE E:MET169 4.4 73.8 1.0
CA E:CYS135 4.4 87.5 1.0
CG E:MET180 4.5 76.7 1.0
CA E:CYS175 4.5 82.4 1.0
CA E:CYS171 4.7 74.0 1.0
SD E:MET169 4.8 73.8 1.0
O E:ASN177 4.9 81.6 1.0
C E:ALA178 4.9 83.7 1.0

Iron binding site 7 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 7 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:50.0
occ:1.00
 FE1 F:SF4501 0.0 50.0 1.0
SG F:CYS405 2.3 34.0 1.0
S4 F:SF4501 2.3 50.0 1.0
S3 F:SF4501 2.3 50.0 1.0
S2 F:SF4501 2.3 50.0 1.0
FE2 F:SF4501 2.7 50.0 1.0
FE3 F:SF4501 2.7 50.0 1.0
FE4 F:SF4501 2.7 50.0 1.0
CB F:CYS405 3.5 34.0 1.0
N F:CYS405 3.6 34.0 1.0
CB F:CYS408 3.8 38.8 1.0
S1 F:SF4501 3.9 50.0 1.0
CA F:CYS405 4.1 34.0 1.0
N F:ILE447 4.2 29.9 1.0
CB F:ILE447 4.4 29.9 1.0
SG F:CYS408 4.4 38.8 1.0
O F:CYS405 4.5 34.0 1.0
CB F:THR446 4.6 32.9 1.0
CB F:GLN404 4.6 29.9 1.0
N F:GLN404 4.6 29.9 1.0
C F:CYS405 4.7 34.0 1.0
C F:GLN404 4.7 29.9 1.0
CG1 F:ILE447 4.7 29.9 1.0
N F:CYS448 4.8 33.8 1.0
SG F:CYS448 4.8 33.8 1.0
SG F:CYS402 4.8 33.1 1.0
CA F:ILE447 4.9 29.9 1.0
CA F:GLN404 4.9 29.9 1.0
CD1 F:ILE447 5.0 29.9 1.0

Iron binding site 8 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 8 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:50.0
occ:1.00
 FE2 F:SF4501 0.0 50.0 1.0
SG F:CYS408 2.3 38.8 1.0
S3 F:SF4501 2.3 50.0 1.0
S4 F:SF4501 2.3 50.0 1.0
S1 F:SF4501 2.3 50.0 1.0
FE1 F:SF4501 2.7 50.0 1.0
FE3 F:SF4501 2.7 50.0 1.0
FE4 F:SF4501 2.7 50.0 1.0
CB F:CYS408 2.8 38.8 1.0
OG F:SER401 3.4 35.2 1.0
S2 F:SF4501 3.9 50.0 1.0
CD2 F:LEU450 4.1 37.5 1.0
CA F:CYS408 4.2 38.8 1.0
CB F:SER401 4.3 35.2 1.0
SG F:CYS405 4.4 34.0 1.0
N F:CYS402 4.5 33.1 1.0
CA F:SER401 4.6 35.2 1.0
C F:CYS408 4.6 38.8 1.0
CB F:LEU450 4.6 37.5 1.0
SG F:CYS448 4.7 33.8 1.0
SG F:CYS402 4.7 33.1 1.0
N F:GLY403 4.8 34.1 1.0
N F:GLY451 4.8 37.0 1.0
CG F:LEU450 4.8 37.5 1.0
N F:ARG409 5.0 50.0 1.0
C F:SER401 5.0 35.2 1.0

Iron binding site 9 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 9 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:50.0
occ:1.00
 FE3 F:SF4501 0.0 50.0 1.0
SG F:CYS402 2.3 33.1 1.0
S4 F:SF4501 2.3 50.0 1.0
S2 F:SF4501 2.3 50.0 1.0
S1 F:SF4501 2.3 50.0 1.0
FE4 F:SF4501 2.7 50.0 1.0
FE1 F:SF4501 2.7 50.0 1.0
FE2 F:SF4501 2.7 50.0 1.0
CB F:CYS402 3.6 33.1 1.0
N F:GLN404 3.8 29.9 1.0
N F:CYS402 3.8 33.1 1.0
S3 F:SF4501 3.9 50.0 1.0
CB F:GLN404 3.9 29.9 1.0
N F:GLY403 3.9 34.1 1.0
CA F:CYS402 4.1 33.1 1.0
C F:CYS402 4.2 33.1 1.0
CD F:PRO246 4.4 29.3 1.0
CA F:GLN404 4.4 29.9 1.0
OG F:SER401 4.6 35.2 1.0
N F:CYS405 4.6 34.0 1.0
OE1 F:GLN404 4.6 29.9 1.0
SG F:CYS448 4.7 33.8 1.0
C F:GLY403 4.7 34.1 1.0
CA F:GLY403 4.8 34.1 1.0
SG F:CYS405 4.9 34.0 1.0
SG F:CYS408 4.9 38.8 1.0
CG F:PRO246 4.9 29.3 1.0
C F:SER401 4.9 35.2 1.0
CG1 F:ILE228 5.0 35.2 1.0

Iron binding site 10 out of 29 in 7arb

Go back to Iron Binding Sites List in 7arb
Iron binding site 10 out of 29 in the Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Arabidopsis Thaliana Complex-I (Complete Composition) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:50.0
occ:1.00
 FE4 F:SF4501 0.0 50.0 1.0
SG F:CYS448 2.3 33.8 1.0
S3 F:SF4501 2.3 50.0 1.0
S1 F:SF4501 2.3 50.0 1.0
S2 F:SF4501 2.3 50.0 1.0
FE3 F:SF4501 2.7 50.0 1.0
FE1 F:SF4501 2.7 50.0 1.0
FE2 F:SF4501 2.7 50.0 1.0
CB F:CYS448 3.6 33.8 1.0
S4 F:SF4501 3.9 50.0 1.0
N F:CYS448 3.9 33.8 1.0
CB F:LEU450 4.2 37.5 1.0
CA F:CYS448 4.2 33.8 1.0
CG F:PRO246 4.4 29.3 1.0
CD1 F:ILE228 4.4 35.2 1.0
C F:CYS448 4.5 33.8 1.0
O F:CYS448 4.7 33.8 1.0
SG F:CYS402 4.7 33.1 1.0
N F:LEU450 4.7 37.5 1.0
SG F:CYS408 4.7 38.8 1.0
CD F:PRO246 4.7 29.3 1.0
SG F:CYS405 4.8 34.0 1.0
N F:GLY451 4.9 37.0 1.0
CB F:CYS408 4.9 38.8 1.0
CA F:LEU450 5.0 37.5 1.0

Reference:

N.Klusch, J.Senkler, O.Yildiz, W.Kuehlbrandt, H.P.Braun. A Ferredoxin Bridge Connects the Two Arms of Plant Mitochondrial Complex I. Plant Cell V. 33 2072 2021.
ISSN: ESSN 1532-298X
PubMed: 33768254
DOI: 10.1093/PLCELL/KOAB092
Page generated: Wed Aug 7 22:34:08 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy