Iron in PDB 7b7t: Coos-V with Oxidized Hybrid Cluster
Enzymatic activity of Coos-V with Oxidized Hybrid Cluster
All present enzymatic activity of Coos-V with Oxidized Hybrid Cluster:
1.2.7.4;
Protein crystallography data
The structure of Coos-V with Oxidized Hybrid Cluster, PDB code: 7b7t
was solved by
J.H.Jeoung,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.38 /
1.38
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
65.768,
107.796,
82.093,
90,
98.66,
90
|
R / Rfree (%)
|
13.1 /
16
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Iron atom in the Coos-V with Oxidized Hybrid Cluster
(pdb code 7b7t). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 18 binding sites of Iron where determined in the
Coos-V with Oxidized Hybrid Cluster, PDB code: 7b7t:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 1 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:12.7
occ:1.00
|
FE1
|
A:FES1001
|
0.0
|
12.7
|
1.0
|
S2
|
A:FES1001
|
2.2
|
13.1
|
1.0
|
S1
|
A:FES1001
|
2.3
|
13.0
|
1.0
|
SG
|
B:CYS38
|
2.3
|
14.2
|
1.0
|
SG
|
B:CYS41
|
2.4
|
12.8
|
1.0
|
FE2
|
A:FES1001
|
2.7
|
12.5
|
1.0
|
HB3
|
B:CYS38
|
3.1
|
17.6
|
1.0
|
CB
|
B:CYS38
|
3.1
|
14.7
|
1.0
|
HB2
|
B:CYS38
|
3.2
|
17.6
|
1.0
|
H
|
B:CYS41
|
3.3
|
16.1
|
1.0
|
HB2
|
B:CYS41
|
3.4
|
16.1
|
1.0
|
CB
|
B:CYS41
|
3.5
|
13.4
|
1.0
|
HH21
|
A:ARG56
|
3.5
|
20.5
|
1.0
|
HH21
|
B:ARG56
|
3.6
|
20.0
|
1.0
|
HG
|
B:SER46
|
3.6
|
16.2
|
1.0
|
HB2
|
B:TYR40
|
3.7
|
15.6
|
1.0
|
N
|
B:CYS41
|
4.0
|
13.4
|
1.0
|
HB3
|
B:SER46
|
4.0
|
15.3
|
1.0
|
HE21
|
A:GLN48
|
4.1
|
19.0
|
1.0
|
HE
|
A:ARG56
|
4.2
|
18.4
|
1.0
|
O
|
A:HOH1432
|
4.2
|
14.7
|
1.0
|
NH2
|
A:ARG56
|
4.2
|
17.1
|
1.0
|
HB3
|
B:CYS41
|
4.3
|
16.1
|
1.0
|
HE
|
B:ARG56
|
4.3
|
19.3
|
1.0
|
CA
|
B:CYS41
|
4.3
|
13.1
|
1.0
|
HB2
|
B:SER46
|
4.3
|
15.3
|
1.0
|
OG
|
B:SER46
|
4.4
|
13.5
|
1.0
|
SG
|
A:CYS41
|
4.4
|
12.2
|
1.0
|
NH2
|
B:ARG56
|
4.4
|
16.6
|
1.0
|
CB
|
B:SER46
|
4.4
|
12.7
|
1.0
|
HA
|
B:CYS41
|
4.6
|
15.7
|
1.0
|
CA
|
B:CYS38
|
4.6
|
15.5
|
1.0
|
SG
|
A:CYS38
|
4.6
|
13.7
|
1.0
|
HH22
|
A:ARG56
|
4.6
|
20.5
|
1.0
|
CB
|
B:TYR40
|
4.6
|
13.0
|
1.0
|
NE2
|
A:GLN48
|
4.7
|
15.9
|
1.0
|
HE21
|
B:GLN48
|
4.7
|
18.1
|
1.0
|
HD2
|
B:TYR40
|
4.8
|
17.8
|
1.0
|
HE22
|
B:GLN48
|
4.8
|
18.1
|
1.0
|
NE
|
A:ARG56
|
4.8
|
15.3
|
1.0
|
HB2
|
A:SER46
|
4.8
|
15.2
|
1.0
|
H
|
B:TYR40
|
4.8
|
17.3
|
1.0
|
HG
|
A:SER46
|
4.9
|
16.4
|
1.0
|
HE22
|
A:GLN48
|
4.9
|
19.0
|
1.0
|
HB3
|
B:TYR40
|
4.9
|
15.6
|
1.0
|
HA
|
B:CYS38
|
4.9
|
18.6
|
1.0
|
HH22
|
B:ARG56
|
4.9
|
20.0
|
1.0
|
CZ
|
A:ARG56
|
4.9
|
16.8
|
1.0
|
HB2
|
A:CYS38
|
4.9
|
17.2
|
1.0
|
C
|
B:TYR40
|
4.9
|
13.2
|
1.0
|
|
Iron binding site 2 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 2 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:12.5
occ:1.00
|
FE2
|
A:FES1001
|
0.0
|
12.5
|
1.0
|
S2
|
A:FES1001
|
2.2
|
13.1
|
1.0
|
S1
|
A:FES1001
|
2.2
|
13.0
|
1.0
|
SG
|
A:CYS41
|
2.3
|
12.2
|
1.0
|
SG
|
A:CYS38
|
2.4
|
13.7
|
1.0
|
FE1
|
A:FES1001
|
2.7
|
12.7
|
1.0
|
HB3
|
A:CYS38
|
3.1
|
17.2
|
1.0
|
CB
|
A:CYS38
|
3.2
|
14.4
|
1.0
|
HB2
|
A:CYS38
|
3.2
|
17.2
|
1.0
|
H
|
A:CYS41
|
3.3
|
15.1
|
1.0
|
HB2
|
A:CYS41
|
3.4
|
13.6
|
1.0
|
CB
|
A:CYS41
|
3.5
|
11.3
|
1.0
|
HH21
|
A:ARG56
|
3.5
|
20.5
|
1.0
|
HH21
|
B:ARG56
|
3.6
|
20.0
|
1.0
|
HG
|
A:SER46
|
3.6
|
16.4
|
1.0
|
HB2
|
A:TYR40
|
3.7
|
17.2
|
1.0
|
N
|
A:CYS41
|
3.9
|
12.6
|
1.0
|
HE21
|
B:GLN48
|
4.1
|
18.1
|
1.0
|
HB3
|
A:SER46
|
4.1
|
15.2
|
1.0
|
HE
|
B:ARG56
|
4.2
|
19.3
|
1.0
|
O
|
B:HOH1096
|
4.2
|
15.4
|
1.0
|
HE
|
A:ARG56
|
4.2
|
18.4
|
1.0
|
NH2
|
B:ARG56
|
4.3
|
16.6
|
1.0
|
HB3
|
A:CYS41
|
4.3
|
13.6
|
1.0
|
CA
|
A:CYS41
|
4.3
|
12.0
|
1.0
|
OG
|
A:SER46
|
4.3
|
13.7
|
1.0
|
HB2
|
A:SER46
|
4.4
|
15.2
|
1.0
|
NH2
|
A:ARG56
|
4.4
|
17.1
|
1.0
|
SG
|
B:CYS41
|
4.4
|
12.8
|
1.0
|
CB
|
A:SER46
|
4.5
|
12.7
|
1.0
|
HA
|
A:CYS41
|
4.6
|
14.4
|
1.0
|
SG
|
B:CYS38
|
4.6
|
14.2
|
1.0
|
CB
|
A:TYR40
|
4.6
|
14.3
|
1.0
|
CA
|
A:CYS38
|
4.6
|
13.7
|
1.0
|
HH22
|
B:ARG56
|
4.6
|
20.0
|
1.0
|
NE2
|
B:GLN48
|
4.7
|
15.1
|
1.0
|
HE21
|
A:GLN48
|
4.7
|
19.0
|
1.0
|
HE22
|
A:GLN48
|
4.8
|
19.0
|
1.0
|
HB2
|
B:SER46
|
4.8
|
15.3
|
1.0
|
HD2
|
A:TYR40
|
4.8
|
19.9
|
1.0
|
H
|
A:TYR40
|
4.8
|
16.8
|
1.0
|
NE
|
B:ARG56
|
4.8
|
16.1
|
1.0
|
HH22
|
A:ARG56
|
4.9
|
20.5
|
1.0
|
HB3
|
A:TYR40
|
4.9
|
17.2
|
1.0
|
HB2
|
B:CYS38
|
4.9
|
17.6
|
1.0
|
HG
|
B:SER46
|
4.9
|
16.2
|
1.0
|
HE22
|
B:GLN48
|
4.9
|
18.1
|
1.0
|
CZ
|
B:ARG56
|
4.9
|
16.5
|
1.0
|
C
|
A:TYR40
|
4.9
|
13.6
|
1.0
|
HA
|
A:CYS38
|
4.9
|
16.4
|
1.0
|
NE
|
A:ARG56
|
5.0
|
15.3
|
1.0
|
|
Iron binding site 3 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 3 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:11.3
occ:1.00
|
FE1
|
A:SF41002
|
0.0
|
11.3
|
1.0
|
S4
|
A:SF41002
|
2.3
|
11.3
|
1.0
|
SG
|
A:CYS55
|
2.3
|
12.0
|
1.0
|
S2
|
A:SF41002
|
2.3
|
11.6
|
1.0
|
S3
|
A:SF41002
|
2.3
|
11.6
|
1.0
|
FE4
|
A:SF41002
|
2.7
|
11.1
|
1.0
|
FE2
|
A:SF41002
|
2.7
|
11.2
|
1.0
|
FE3
|
A:SF41002
|
2.8
|
11.1
|
1.0
|
HB2
|
A:CYS55
|
2.8
|
14.7
|
1.0
|
CB
|
A:CYS55
|
3.2
|
12.2
|
1.0
|
H
|
A:VAL67
|
3.4
|
15.2
|
1.0
|
HA3
|
A:GLY53
|
3.6
|
17.9
|
1.0
|
HB3
|
A:CYS55
|
3.7
|
14.7
|
1.0
|
HA2
|
A:GLY53
|
3.8
|
17.9
|
1.0
|
HB3
|
A:CYS47
|
3.8
|
14.1
|
1.0
|
HA3
|
A:GLY66
|
3.8
|
13.3
|
1.0
|
S1
|
A:SF41002
|
3.9
|
10.8
|
1.0
|
CA
|
A:GLY53
|
4.0
|
14.9
|
1.0
|
N
|
A:VAL67
|
4.1
|
12.7
|
1.0
|
HB
|
A:VAL67
|
4.1
|
15.2
|
1.0
|
H
|
A:CYS68
|
4.1
|
14.2
|
1.0
|
H
|
A:CYS55
|
4.2
|
14.2
|
1.0
|
N
|
A:GLY53
|
4.2
|
13.6
|
1.0
|
HA2
|
A:GLY66
|
4.2
|
13.3
|
1.0
|
H
|
A:GLY53
|
4.2
|
16.3
|
1.0
|
HG23
|
A:VAL67
|
4.3
|
15.8
|
1.0
|
N
|
A:CYS55
|
4.3
|
11.8
|
1.0
|
CA
|
A:CYS55
|
4.3
|
12.2
|
1.0
|
CA
|
A:GLY66
|
4.4
|
11.1
|
1.0
|
CB
|
A:CYS47
|
4.6
|
11.7
|
1.0
|
SG
|
A:CYS50
|
4.7
|
11.5
|
1.0
|
SG
|
A:CYS47
|
4.7
|
10.8
|
1.0
|
C
|
A:GLY66
|
4.7
|
11.6
|
1.0
|
C
|
A:ASN52
|
4.8
|
13.2
|
1.0
|
CB
|
A:VAL67
|
4.8
|
12.7
|
1.0
|
HA
|
A:CYS55
|
4.8
|
14.6
|
1.0
|
SG
|
A:CYS68
|
4.8
|
11.4
|
1.0
|
HE2
|
A:MET75
|
4.8
|
16.6
|
1.0
|
HB3
|
A:ASN52
|
4.9
|
15.7
|
1.0
|
HB2
|
A:ASN52
|
4.9
|
15.7
|
1.0
|
HA
|
A:PRO54
|
4.9
|
16.8
|
1.0
|
O
|
A:CYS47
|
4.9
|
11.2
|
1.0
|
N
|
A:CYS68
|
4.9
|
11.8
|
1.0
|
CG2
|
A:VAL67
|
4.9
|
13.2
|
1.0
|
H
|
A:CYS50
|
5.0
|
14.3
|
1.0
|
C
|
A:PRO54
|
5.0
|
13.4
|
1.0
|
CA
|
A:VAL67
|
5.0
|
12.1
|
1.0
|
|
Iron binding site 4 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 4 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:11.2
occ:1.00
|
FE2
|
A:SF41002
|
0.0
|
11.2
|
1.0
|
S3
|
A:SF41002
|
2.3
|
11.6
|
1.0
|
SG
|
A:CYS50
|
2.3
|
11.5
|
1.0
|
S4
|
A:SF41002
|
2.3
|
11.3
|
1.0
|
S1
|
A:SF41002
|
2.3
|
10.8
|
1.0
|
FE1
|
A:SF41002
|
2.7
|
11.3
|
1.0
|
FE4
|
A:SF41002
|
2.7
|
11.1
|
1.0
|
FE3
|
A:SF41002
|
2.7
|
11.1
|
1.0
|
H
|
A:CYS50
|
3.2
|
14.3
|
1.0
|
HB3
|
A:CYS50
|
3.3
|
13.3
|
1.0
|
CB
|
A:CYS50
|
3.3
|
11.1
|
1.0
|
N
|
A:CYS50
|
3.6
|
11.9
|
1.0
|
H
|
A:GLY53
|
3.8
|
16.3
|
1.0
|
CA
|
A:CYS50
|
3.8
|
10.8
|
1.0
|
S2
|
A:SF41002
|
3.9
|
11.6
|
1.0
|
HG1
|
A:THR196
|
3.9
|
16.9
|
1.0
|
HB2
|
A:ASN52
|
4.0
|
15.7
|
1.0
|
HG21
|
A:THR196
|
4.0
|
14.9
|
1.0
|
HG23
|
A:THR196
|
4.0
|
14.9
|
1.0
|
O
|
A:CYS50
|
4.2
|
12.8
|
1.0
|
HB2
|
A:CYS50
|
4.2
|
13.3
|
1.0
|
C
|
A:CYS50
|
4.2
|
11.3
|
1.0
|
O
|
A:HOH1452
|
4.2
|
19.8
|
1.0
|
N
|
A:GLY53
|
4.2
|
13.6
|
1.0
|
HA3
|
A:GLY53
|
4.3
|
17.9
|
1.0
|
OG1
|
A:THR196
|
4.3
|
14.0
|
1.0
|
H
|
A:ASN52
|
4.3
|
14.7
|
1.0
|
HB2
|
A:LEU49
|
4.3
|
14.6
|
1.0
|
HB3
|
A:CYS68
|
4.4
|
13.8
|
1.0
|
H
|
A:LEU49
|
4.4
|
13.4
|
1.0
|
CG2
|
A:THR196
|
4.4
|
12.5
|
1.0
|
C
|
A:LEU49
|
4.5
|
13.8
|
1.0
|
H
|
A:CYS68
|
4.7
|
14.2
|
1.0
|
CA
|
A:GLY53
|
4.7
|
14.9
|
1.0
|
CB
|
A:ASN52
|
4.8
|
13.1
|
1.0
|
SG
|
A:CYS68
|
4.8
|
11.4
|
1.0
|
HA
|
A:CYS50
|
4.8
|
13.0
|
1.0
|
SG
|
A:CYS47
|
4.8
|
10.8
|
1.0
|
N
|
A:LEU49
|
4.8
|
11.1
|
1.0
|
SG
|
A:CYS55
|
4.8
|
12.0
|
1.0
|
HB3
|
A:ASN52
|
4.8
|
15.7
|
1.0
|
N
|
A:ASN52
|
4.8
|
12.3
|
1.0
|
HH22
|
A:ARG78
|
4.9
|
13.2
|
1.0
|
C
|
A:ASN52
|
4.9
|
13.2
|
1.0
|
HB
|
A:VAL67
|
4.9
|
15.2
|
1.0
|
HA2
|
A:GLY53
|
5.0
|
17.9
|
1.0
|
|
Iron binding site 5 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 5 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:11.1
occ:1.00
|
FE3
|
A:SF41002
|
0.0
|
11.1
|
1.0
|
S2
|
A:SF41002
|
2.3
|
11.6
|
1.0
|
SG
|
A:CYS68
|
2.3
|
11.4
|
1.0
|
S4
|
A:SF41002
|
2.3
|
11.3
|
1.0
|
S1
|
A:SF41002
|
2.3
|
10.8
|
1.0
|
FE2
|
A:SF41002
|
2.7
|
11.2
|
1.0
|
FE1
|
A:SF41002
|
2.8
|
11.3
|
1.0
|
FE4
|
A:SF41002
|
2.8
|
11.1
|
1.0
|
H
|
A:CYS68
|
3.1
|
14.2
|
1.0
|
HB3
|
A:CYS68
|
3.1
|
13.8
|
1.0
|
CB
|
A:CYS68
|
3.3
|
11.5
|
1.0
|
HH22
|
A:ARG78
|
3.4
|
13.2
|
1.0
|
HG22
|
A:ILE70
|
3.5
|
13.2
|
1.0
|
HA3
|
A:GLY66
|
3.8
|
13.3
|
1.0
|
HG23
|
A:THR196
|
3.8
|
14.9
|
1.0
|
N
|
A:CYS68
|
3.9
|
11.8
|
1.0
|
S3
|
A:SF41002
|
4.0
|
11.6
|
1.0
|
HG21
|
A:ILE70
|
4.0
|
13.2
|
1.0
|
HB2
|
A:CYS68
|
4.1
|
13.8
|
1.0
|
CG2
|
A:ILE70
|
4.2
|
11.0
|
1.0
|
CA
|
A:CYS68
|
4.2
|
11.8
|
1.0
|
NH2
|
A:ARG78
|
4.3
|
11.0
|
1.0
|
H
|
A:VAL67
|
4.3
|
15.2
|
1.0
|
O
|
A:HOH1415
|
4.3
|
11.5
|
1.0
|
H
|
A:ILE70
|
4.5
|
13.9
|
1.0
|
HH12
|
A:ARG78
|
4.5
|
13.3
|
1.0
|
N
|
A:VAL67
|
4.5
|
12.7
|
1.0
|
SG
|
A:CYS50
|
4.6
|
11.5
|
1.0
|
HG21
|
A:THR196
|
4.6
|
14.9
|
1.0
|
HB
|
A:ILE70
|
4.6
|
12.1
|
1.0
|
CA
|
A:GLY66
|
4.6
|
11.1
|
1.0
|
HH21
|
A:ARG78
|
4.7
|
13.2
|
1.0
|
CG2
|
A:THR196
|
4.7
|
12.5
|
1.0
|
HG1
|
A:THR196
|
4.7
|
16.9
|
1.0
|
O
|
A:HOH1452
|
4.8
|
19.8
|
1.0
|
C
|
A:GLY66
|
4.8
|
11.6
|
1.0
|
SG
|
A:CYS55
|
4.8
|
12.0
|
1.0
|
HB
|
A:VAL67
|
4.8
|
15.2
|
1.0
|
SG
|
A:CYS47
|
4.8
|
10.8
|
1.0
|
H
|
A:GLY69
|
4.8
|
13.7
|
1.0
|
HG23
|
A:ILE70
|
4.9
|
13.2
|
1.0
|
HB2
|
A:CYS55
|
4.9
|
14.7
|
1.0
|
HA
|
A:CYS68
|
5.0
|
14.1
|
1.0
|
HB3
|
A:CYS47
|
5.0
|
14.1
|
1.0
|
|
Iron binding site 6 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 6 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:11.1
occ:1.00
|
FE4
|
A:SF41002
|
0.0
|
11.1
|
1.0
|
S1
|
A:SF41002
|
2.3
|
10.8
|
1.0
|
SG
|
A:CYS47
|
2.3
|
10.8
|
1.0
|
S3
|
A:SF41002
|
2.3
|
11.6
|
1.0
|
S2
|
A:SF41002
|
2.3
|
11.6
|
1.0
|
FE1
|
A:SF41002
|
2.7
|
11.3
|
1.0
|
FE2
|
A:SF41002
|
2.7
|
11.2
|
1.0
|
FE3
|
A:SF41002
|
2.8
|
11.1
|
1.0
|
HB3
|
A:CYS47
|
2.9
|
14.1
|
1.0
|
HH22
|
A:ARG78
|
3.1
|
13.2
|
1.0
|
CB
|
A:CYS47
|
3.2
|
11.7
|
1.0
|
H
|
A:LEU49
|
3.3
|
13.4
|
1.0
|
HB2
|
A:LEU49
|
3.5
|
14.6
|
1.0
|
HH21
|
A:ARG78
|
3.6
|
13.2
|
1.0
|
NH2
|
A:ARG78
|
3.6
|
11.0
|
1.0
|
HB2
|
A:CYS47
|
3.7
|
14.1
|
1.0
|
S4
|
A:SF41002
|
3.9
|
11.3
|
1.0
|
HB2
|
A:CYS55
|
3.9
|
14.7
|
1.0
|
N
|
A:LEU49
|
4.1
|
11.1
|
1.0
|
H
|
A:CYS50
|
4.1
|
14.3
|
1.0
|
C
|
A:CYS47
|
4.3
|
10.4
|
1.0
|
HE2
|
A:MET75
|
4.3
|
16.6
|
1.0
|
CA
|
A:CYS47
|
4.3
|
10.5
|
1.0
|
CB
|
A:LEU49
|
4.4
|
12.2
|
1.0
|
HG
|
A:LEU49
|
4.5
|
14.2
|
1.0
|
O
|
A:CYS47
|
4.5
|
11.2
|
1.0
|
HG1
|
A:THR196
|
4.5
|
16.9
|
1.0
|
N
|
A:CYS50
|
4.6
|
11.9
|
1.0
|
HG21
|
A:ILE70
|
4.6
|
13.2
|
1.0
|
CA
|
A:LEU49
|
4.6
|
11.4
|
1.0
|
N
|
A:GLN48
|
4.6
|
11.2
|
1.0
|
SG
|
A:CYS55
|
4.7
|
12.0
|
1.0
|
HD12
|
A:LEU49
|
4.7
|
16.2
|
1.0
|
CB
|
A:CYS55
|
4.8
|
12.2
|
1.0
|
CZ
|
A:ARG78
|
4.8
|
10.2
|
1.0
|
HA
|
A:CYS47
|
4.8
|
12.6
|
1.0
|
H
|
A:GLN48
|
4.8
|
13.5
|
1.0
|
SG
|
A:CYS68
|
4.9
|
11.4
|
1.0
|
HG22
|
A:ILE70
|
4.9
|
13.2
|
1.0
|
SG
|
A:CYS50
|
4.9
|
11.5
|
1.0
|
H
|
A:CYS55
|
4.9
|
14.2
|
1.0
|
CG
|
A:LEU49
|
4.9
|
11.8
|
1.0
|
HA3
|
A:GLY53
|
4.9
|
17.9
|
1.0
|
C
|
A:LEU49
|
4.9
|
13.8
|
1.0
|
|
Iron binding site 7 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 7 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:14.6
occ:0.64
|
FE1
|
A:SF31003
|
0.0
|
14.6
|
0.6
|
S3
|
A:SF31003
|
2.2
|
14.7
|
0.6
|
S1
|
A:SF31003
|
2.3
|
15.3
|
0.6
|
S2
|
A:SF31003
|
2.3
|
15.3
|
0.6
|
SG
|
A:CYS480
|
2.3
|
15.8
|
0.7
|
FE3
|
A:SF31003
|
2.6
|
17.2
|
0.6
|
FE4
|
A:SF31003
|
2.8
|
15.2
|
0.6
|
HB2
|
A:CYS480
|
3.2
|
16.6
|
0.7
|
CB
|
A:CYS480
|
3.4
|
13.8
|
0.7
|
H
|
A:CYS480
|
3.5
|
16.4
|
0.7
|
HD1
|
A:TRP317
|
3.6
|
20.5
|
1.0
|
HA
|
A:CYS449
|
3.7
|
20.0
|
1.0
|
HE1
|
A:HIS259
|
3.8
|
24.6
|
0.9
|
HG3
|
A:GLU295
|
3.8
|
20.1
|
0.8
|
HB3
|
A:TRP317
|
3.9
|
21.2
|
1.0
|
HB3
|
A:CYS449
|
4.0
|
21.4
|
1.0
|
FE7
|
A:SF31003
|
4.0
|
14.9
|
0.6
|
HB3
|
A:CYS480
|
4.1
|
16.6
|
0.7
|
HG2
|
A:GLU295
|
4.2
|
20.1
|
0.8
|
N
|
A:CYS480
|
4.2
|
13.6
|
0.7
|
CD1
|
A:TRP317
|
4.3
|
17.1
|
1.0
|
OE2
|
A:GLU556
|
4.4
|
14.9
|
0.5
|
CA
|
A:CYS480
|
4.4
|
14.7
|
0.7
|
CG
|
A:GLU295
|
4.4
|
16.7
|
0.8
|
CA
|
A:CYS449
|
4.5
|
16.7
|
1.0
|
CB
|
A:CYS449
|
4.5
|
17.8
|
1.0
|
CE1
|
A:HIS259
|
4.5
|
20.6
|
0.9
|
H
|
A:TRP317
|
4.6
|
20.1
|
1.0
|
H
|
A:THR450
|
4.6
|
14.0
|
1.0
|
HA
|
A:CYS480
|
4.6
|
17.6
|
0.7
|
HE1
|
A:HIS483
|
4.7
|
27.2
|
1.0
|
O
|
A:HOH1122
|
4.7
|
36.2
|
0.9
|
HB
|
A:ILE294
|
4.7
|
24.7
|
1.0
|
SG
|
A:CYS449
|
4.8
|
19.7
|
1.0
|
HB2
|
A:ASN316
|
4.8
|
20.4
|
1.0
|
NE2
|
A:HIS259
|
4.8
|
20.4
|
0.9
|
HB3
|
A:CYS338
|
4.8
|
26.0
|
0.1
|
HD22
|
A:ASN337
|
4.8
|
30.6
|
1.0
|
CB
|
A:TRP317
|
4.8
|
17.7
|
1.0
|
SG
|
A:CYS338
|
4.9
|
18.3
|
0.9
|
CD
|
A:GLU295
|
4.9
|
16.7
|
0.8
|
CG
|
A:TRP317
|
5.0
|
15.2
|
1.0
|
OE2
|
A:GLU295
|
5.0
|
16.2
|
0.8
|
|
Iron binding site 8 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 8 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:17.2
occ:0.64
|
FE3
|
A:SF31003
|
0.0
|
17.2
|
0.6
|
S3
|
A:SF31003
|
2.2
|
14.7
|
0.6
|
S1
|
A:SF31003
|
2.2
|
15.3
|
0.6
|
SG
|
A:CYS338
|
2.3
|
18.3
|
0.9
|
FE1
|
A:SF31003
|
2.6
|
14.6
|
0.6
|
HB3
|
A:CYS338
|
2.8
|
26.0
|
0.1
|
HB2
|
A:CYS338
|
2.9
|
26.0
|
0.1
|
HB2
|
A:CYS338
|
3.1
|
23.3
|
0.9
|
HD22
|
A:ASN337
|
3.1
|
30.6
|
1.0
|
HB3
|
A:TRP317
|
3.3
|
21.2
|
1.0
|
CB
|
A:CYS338
|
3.3
|
21.7
|
0.1
|
CB
|
A:CYS338
|
3.3
|
19.4
|
0.9
|
HD1
|
A:TRP317
|
3.6
|
20.5
|
1.0
|
HE3
|
A:MET555
|
3.6
|
16.6
|
0.6
|
FE4
|
A:SF31003
|
3.6
|
15.2
|
0.6
|
H
|
A:CYS338
|
3.6
|
24.0
|
1.0
|
HE2
|
A:MET555
|
3.7
|
20.7
|
0.4
|
HE1
|
A:HIS259
|
3.8
|
24.6
|
0.9
|
CD1
|
A:TRP317
|
3.8
|
17.1
|
1.0
|
ND2
|
A:ASN337
|
3.8
|
25.5
|
1.0
|
HG2
|
A:GLU556
|
3.8
|
18.3
|
0.5
|
HE1
|
A:MET555
|
3.9
|
20.7
|
0.4
|
N
|
A:CYS338
|
3.9
|
20.0
|
1.0
|
CB
|
A:TRP317
|
3.9
|
17.7
|
1.0
|
CG
|
A:TRP317
|
3.9
|
15.2
|
1.0
|
HG2
|
A:GLU556
|
4.0
|
18.5
|
0.5
|
HB2
|
A:TRP317
|
4.0
|
21.2
|
1.0
|
HE1
|
A:MET555
|
4.1
|
16.6
|
0.6
|
HB3
|
A:CYS338
|
4.1
|
23.3
|
0.9
|
HD21
|
A:ASN337
|
4.1
|
30.6
|
1.0
|
CE
|
A:MET555
|
4.1
|
13.9
|
0.6
|
HE2
|
A:MET555
|
4.1
|
16.6
|
0.6
|
CA
|
A:CYS338
|
4.2
|
19.5
|
0.9
|
HB2
|
A:ASN337
|
4.2
|
23.4
|
1.0
|
CA
|
A:CYS338
|
4.2
|
20.2
|
0.1
|
OE2
|
A:GLU556
|
4.2
|
14.9
|
0.5
|
SG
|
A:CYS480
|
4.2
|
15.8
|
0.7
|
CE
|
A:MET555
|
4.3
|
17.3
|
0.4
|
HG3
|
A:GLU556
|
4.3
|
18.5
|
0.5
|
HG3
|
A:GLU556
|
4.3
|
18.3
|
0.5
|
S2
|
A:SF31003
|
4.4
|
15.3
|
0.6
|
HA
|
A:CYS338
|
4.4
|
24.3
|
1.0
|
CG
|
A:GLU556
|
4.5
|
15.2
|
0.5
|
NE1
|
A:TRP317
|
4.6
|
16.2
|
1.0
|
C
|
A:ASN337
|
4.6
|
19.0
|
1.0
|
HD22
|
B:ASN197
|
4.6
|
16.0
|
1.0
|
CG
|
A:GLU556
|
4.6
|
15.4
|
0.5
|
SG
|
A:CYS338
|
4.6
|
22.5
|
0.1
|
HD12
|
A:ILE294
|
4.7
|
25.2
|
1.0
|
CE1
|
A:HIS259
|
4.7
|
20.6
|
0.9
|
CD
|
A:GLU556
|
4.7
|
15.5
|
0.5
|
HE3
|
A:MET555
|
4.8
|
20.7
|
0.4
|
CG
|
A:ASN337
|
4.8
|
24.7
|
1.0
|
CD2
|
A:TRP317
|
4.8
|
15.1
|
1.0
|
HB3
|
A:CYS449
|
4.8
|
21.4
|
1.0
|
CB
|
A:ASN337
|
4.9
|
19.5
|
1.0
|
HE1
|
A:TRP317
|
4.9
|
19.5
|
1.0
|
O
|
A:ASN337
|
5.0
|
18.7
|
1.0
|
|
Iron binding site 9 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 9 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:15.2
occ:0.64
|
FE4
|
A:SF31003
|
0.0
|
15.2
|
0.6
|
OE2
|
A:GLU556
|
2.1
|
14.9
|
0.5
|
S3
|
A:SF31003
|
2.2
|
14.7
|
0.6
|
S2
|
A:SF31003
|
2.3
|
15.3
|
0.6
|
O
|
A:HOH1122
|
2.4
|
36.2
|
0.9
|
SG
|
A:CYS449
|
2.5
|
19.7
|
1.0
|
FE1
|
A:SF31003
|
2.8
|
14.6
|
0.6
|
HG3
|
A:GLU556
|
3.0
|
18.5
|
0.5
|
HG3
|
A:GLU556
|
3.1
|
18.3
|
0.5
|
HB3
|
A:CYS449
|
3.1
|
21.4
|
1.0
|
CD
|
A:GLU556
|
3.1
|
15.5
|
0.5
|
OE1
|
A:GLU556
|
3.2
|
16.3
|
0.5
|
CB
|
A:CYS449
|
3.3
|
17.8
|
1.0
|
CD
|
A:GLU556
|
3.3
|
16.0
|
0.5
|
HA
|
A:CYS449
|
3.5
|
20.0
|
1.0
|
CG
|
A:GLU556
|
3.5
|
15.2
|
0.5
|
CG
|
A:GLU556
|
3.6
|
15.4
|
0.5
|
FE3
|
A:SF31003
|
3.6
|
17.2
|
0.6
|
HG2
|
A:GLU556
|
3.7
|
18.5
|
0.5
|
HG2
|
A:GLU556
|
3.8
|
18.3
|
0.5
|
CA
|
A:CYS449
|
3.9
|
16.7
|
1.0
|
OE2
|
A:GLU556
|
4.0
|
16.9
|
0.5
|
FE7
|
A:SF31003
|
4.0
|
14.9
|
0.6
|
HB2
|
A:CYS449
|
4.1
|
21.4
|
1.0
|
H
|
A:GLU556
|
4.2
|
14.9
|
1.0
|
OE1
|
A:GLU556
|
4.2
|
15.8
|
0.5
|
HB2
|
A:LYS558
|
4.3
|
21.2
|
1.0
|
HB3
|
A:MET555
|
4.3
|
15.3
|
0.6
|
HE3
|
A:MET555
|
4.3
|
16.6
|
0.6
|
S1
|
A:SF31003
|
4.3
|
15.3
|
0.6
|
HB2
|
A:ALA559
|
4.4
|
22.4
|
1.0
|
HB2
|
A:CYS480
|
4.5
|
16.6
|
0.7
|
HD22
|
A:ASN337
|
4.5
|
30.6
|
1.0
|
HB3
|
A:MET555
|
4.5
|
16.3
|
0.4
|
HD3
|
A:LYS558
|
4.5
|
25.4
|
1.0
|
HE2
|
A:MET555
|
4.5
|
20.7
|
0.4
|
HD21
|
A:ASN337
|
4.5
|
30.6
|
1.0
|
N
|
A:CYS449
|
4.5
|
17.9
|
1.0
|
HG
|
A:CYS521
|
4.5
|
27.2
|
0.2
|
HE1
|
A:HIS259
|
4.6
|
24.6
|
0.9
|
H
|
A:CYS480
|
4.7
|
16.4
|
0.7
|
H
|
A:CYS449
|
4.8
|
21.5
|
1.0
|
H
|
A:THR450
|
4.8
|
14.0
|
1.0
|
H
|
A:MET555
|
4.8
|
13.7
|
0.4
|
H
|
A:ALA559
|
4.8
|
22.2
|
1.0
|
SG
|
A:CYS480
|
4.8
|
15.8
|
0.7
|
H
|
A:MET555
|
4.8
|
13.7
|
0.6
|
ND2
|
A:ASN337
|
4.8
|
25.5
|
1.0
|
N
|
A:GLU556
|
4.9
|
12.4
|
1.0
|
HB2
|
A:CYS521
|
4.9
|
24.5
|
0.2
|
O
|
A:ASN448
|
4.9
|
17.6
|
1.0
|
CB
|
A:GLU556
|
5.0
|
15.4
|
0.5
|
|
Iron binding site 10 out
of 18 in 7b7t
Go back to
Iron Binding Sites List in 7b7t
Iron binding site 10 out
of 18 in the Coos-V with Oxidized Hybrid Cluster
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Coos-V with Oxidized Hybrid Cluster within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:14.9
occ:0.64
|
FE7
|
A:SF31003
|
0.0
|
14.9
|
0.6
|
OE2
|
A:GLU295
|
2.1
|
16.2
|
0.8
|
NE2
|
A:HIS259
|
2.3
|
20.4
|
0.9
|
SG
|
A:CYS521
|
2.3
|
17.3
|
0.8
|
S2
|
A:SF31003
|
2.3
|
15.3
|
0.6
|
HB2
|
A:CYS521
|
2.4
|
24.5
|
0.2
|
HG3
|
A:GLU295
|
2.6
|
20.1
|
0.8
|
HB3
|
A:CYS521
|
3.0
|
24.5
|
0.2
|
CD
|
A:GLU295
|
3.0
|
16.7
|
0.8
|
H
|
A:CYS521
|
3.1
|
18.6
|
0.8
|
H
|
A:CYS521
|
3.1
|
18.6
|
0.2
|
CB
|
A:CYS521
|
3.1
|
20.4
|
0.2
|
HB3
|
A:CYS521
|
3.2
|
20.1
|
0.8
|
CG
|
A:GLU295
|
3.2
|
16.7
|
0.8
|
CE1
|
A:HIS259
|
3.2
|
20.6
|
0.9
|
CD2
|
A:HIS259
|
3.2
|
19.9
|
0.9
|
CB
|
A:CYS521
|
3.4
|
16.7
|
0.8
|
HE1
|
A:HIS259
|
3.4
|
24.6
|
0.9
|
HD2
|
A:HIS259
|
3.4
|
23.9
|
0.9
|
HA2
|
A:GLY479
|
3.6
|
15.0
|
0.6
|
O
|
A:HOH1122
|
3.6
|
36.2
|
0.9
|
HE2
|
A:LYS558
|
3.8
|
27.0
|
1.0
|
N
|
A:CYS521
|
3.9
|
15.5
|
0.8
|
HG2
|
A:GLU295
|
3.9
|
20.1
|
0.8
|
FE1
|
A:SF31003
|
4.0
|
14.6
|
0.6
|
HD3
|
A:LYS558
|
4.0
|
25.4
|
1.0
|
FE4
|
A:SF31003
|
4.0
|
15.2
|
0.6
|
HG
|
A:CYS521
|
4.1
|
27.2
|
0.2
|
HB2
|
A:CYS521
|
4.1
|
20.1
|
0.8
|
OE1
|
A:GLU295
|
4.1
|
18.3
|
0.8
|
HB
|
A:THR520
|
4.1
|
17.8
|
0.8
|
CA
|
A:CYS521
|
4.2
|
17.9
|
0.2
|
HB3
|
A:GLU295
|
4.2
|
20.7
|
0.8
|
H
|
A:CYS480
|
4.2
|
16.4
|
0.7
|
HE3
|
A:LYS558
|
4.2
|
27.0
|
1.0
|
CA
|
A:CYS521
|
4.2
|
17.2
|
0.8
|
CB
|
A:GLU295
|
4.2
|
17.2
|
0.8
|
SG
|
A:CYS521
|
4.3
|
22.7
|
0.2
|
ND1
|
A:HIS259
|
4.4
|
20.9
|
0.9
|
CE
|
A:LYS558
|
4.4
|
22.5
|
1.0
|
HB2
|
A:GLU295
|
4.4
|
20.7
|
0.8
|
CG
|
A:HIS259
|
4.4
|
20.3
|
0.9
|
OE2
|
A:GLU556
|
4.5
|
14.9
|
0.5
|
CA
|
A:GLY479
|
4.5
|
12.5
|
0.6
|
H
|
A:THR522
|
4.5
|
19.3
|
0.9
|
HA3
|
A:GLY479
|
4.6
|
15.0
|
0.6
|
S1
|
A:SF31003
|
4.6
|
15.3
|
0.6
|
CD
|
A:LYS558
|
4.7
|
21.2
|
1.0
|
HB2
|
A:LYS558
|
4.7
|
21.2
|
1.0
|
HB3
|
A:LYS558
|
4.8
|
21.2
|
1.0
|
HH
|
A:TYR91
|
4.8
|
23.0
|
1.0
|
HD21
|
A:ASN337
|
4.8
|
30.6
|
1.0
|
HA
|
A:CYS521
|
4.8
|
21.5
|
0.2
|
N
|
A:CYS480
|
4.9
|
13.6
|
0.7
|
HA
|
A:THR520
|
4.9
|
18.1
|
0.8
|
HA
|
A:CYS521
|
5.0
|
20.6
|
0.8
|
|
Reference:
J.H.Jeoung,
J.Fesseler,
L.Domnik,
F.Klemke,
M.Sinnreich,
C.Teutloff,
H.Dobbek.
A Morphing [4FE-3S-No]-Cluster Within A Carbon Monoxide Dehydrogenase Scaffold. Angew.Chem.Int.Ed.Engl. V. 61 17000 2022.
ISSN: ESSN 1521-3773
PubMed: 35133707
DOI: 10.1002/ANIE.202117000
Page generated: Wed Aug 7 23:23:24 2024
|