Iron in PDB 7b95: Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Enzymatic activity of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
All present enzymatic activity of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine:
1.2.7.4;
Protein crystallography data
The structure of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine, PDB code: 7b95
was solved by
J.H.Jeoung,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.11 /
1.40
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
65.148,
108.065,
82.237,
90,
94.8,
90
|
R / Rfree (%)
|
13.3 /
16.6
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Iron atom in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
(pdb code 7b95). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 18 binding sites of Iron where determined in the
Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine, PDB code: 7b95:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 1 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:12.4
occ:1.00
|
FE1
|
A:FES1001
|
0.0
|
12.4
|
1.0
|
S2
|
A:FES1001
|
2.2
|
12.8
|
1.0
|
S1
|
A:FES1001
|
2.3
|
12.6
|
1.0
|
SG
|
B:CYS41
|
2.3
|
13.0
|
1.0
|
SG
|
B:CYS38
|
2.3
|
13.1
|
1.0
|
FE2
|
A:FES1001
|
2.7
|
12.5
|
1.0
|
HB3
|
B:CYS38
|
3.0
|
15.0
|
1.0
|
CB
|
B:CYS38
|
3.1
|
12.5
|
1.0
|
HB2
|
B:CYS38
|
3.2
|
15.0
|
1.0
|
H
|
B:CYS41
|
3.3
|
13.6
|
1.0
|
HB2
|
B:CYS41
|
3.4
|
14.7
|
1.0
|
HH21
|
B:ARG56
|
3.5
|
17.2
|
1.0
|
CB
|
B:CYS41
|
3.5
|
12.2
|
1.0
|
HG
|
B:SER46
|
3.5
|
16.6
|
1.0
|
HH21
|
A:ARG56
|
3.6
|
16.8
|
1.0
|
HB2
|
B:TYR40
|
3.8
|
14.1
|
1.0
|
N
|
B:CYS41
|
3.9
|
11.3
|
1.0
|
HE21
|
A:GLN48
|
4.0
|
16.6
|
1.0
|
HB3
|
B:SER46
|
4.0
|
16.0
|
1.0
|
HE
|
B:ARG56
|
4.1
|
15.1
|
1.0
|
CA
|
B:CYS41
|
4.3
|
11.4
|
1.0
|
HB3
|
B:CYS41
|
4.3
|
14.7
|
1.0
|
OG
|
B:SER46
|
4.3
|
13.8
|
1.0
|
O
|
A:HOH1394
|
4.3
|
38.9
|
1.0
|
NH2
|
A:ARG56
|
4.3
|
14.0
|
1.0
|
HE
|
A:ARG56
|
4.3
|
15.1
|
1.0
|
HB2
|
B:SER46
|
4.3
|
16.0
|
1.0
|
NH2
|
B:ARG56
|
4.3
|
14.3
|
1.0
|
SG
|
A:CYS41
|
4.4
|
12.4
|
1.0
|
CB
|
B:SER46
|
4.4
|
13.3
|
1.0
|
SG
|
A:CYS38
|
4.5
|
13.0
|
1.0
|
HA
|
B:CYS41
|
4.5
|
13.7
|
1.0
|
CA
|
B:CYS38
|
4.6
|
12.9
|
1.0
|
HH22
|
A:ARG56
|
4.6
|
16.8
|
1.0
|
NE2
|
A:GLN48
|
4.6
|
13.8
|
1.0
|
CB
|
B:TYR40
|
4.7
|
11.7
|
1.0
|
HE21
|
B:GLN48
|
4.7
|
17.0
|
1.0
|
HB2
|
A:CYS38
|
4.8
|
16.1
|
1.0
|
HE22
|
B:GLN48
|
4.8
|
17.0
|
1.0
|
HH22
|
B:ARG56
|
4.8
|
17.2
|
1.0
|
HB2
|
A:SER46
|
4.8
|
15.6
|
1.0
|
NE
|
B:ARG56
|
4.9
|
12.5
|
1.0
|
HE22
|
A:GLN48
|
4.9
|
16.6
|
1.0
|
HG
|
A:SER46
|
4.9
|
16.5
|
1.0
|
HB3
|
B:TYR40
|
4.9
|
14.1
|
1.0
|
HB2
|
A:PRO54
|
4.9
|
18.1
|
1.0
|
H
|
B:TYR40
|
4.9
|
14.9
|
1.0
|
HA
|
B:CYS38
|
4.9
|
15.6
|
1.0
|
NE
|
A:ARG56
|
4.9
|
12.6
|
1.0
|
C
|
B:TYR40
|
4.9
|
11.8
|
1.0
|
O
|
B:CYS38
|
5.0
|
13.9
|
1.0
|
|
Iron binding site 2 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 2 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:12.5
occ:1.00
|
FE2
|
A:FES1001
|
0.0
|
12.5
|
1.0
|
S1
|
A:FES1001
|
2.2
|
12.6
|
1.0
|
S2
|
A:FES1001
|
2.2
|
12.8
|
1.0
|
SG
|
A:CYS38
|
2.3
|
13.0
|
1.0
|
SG
|
A:CYS41
|
2.3
|
12.4
|
1.0
|
FE1
|
A:FES1001
|
2.7
|
12.4
|
1.0
|
HB3
|
A:CYS38
|
3.1
|
16.1
|
1.0
|
CB
|
A:CYS38
|
3.1
|
13.4
|
1.0
|
HB2
|
A:CYS38
|
3.2
|
16.1
|
1.0
|
H
|
A:CYS41
|
3.2
|
15.1
|
1.0
|
HH21
|
A:ARG56
|
3.4
|
16.8
|
1.0
|
HB2
|
A:CYS41
|
3.4
|
15.1
|
1.0
|
HG
|
A:SER46
|
3.5
|
16.5
|
1.0
|
CB
|
A:CYS41
|
3.5
|
12.6
|
1.0
|
HH21
|
B:ARG56
|
3.7
|
17.2
|
1.0
|
HB2
|
A:TYR40
|
3.7
|
15.1
|
1.0
|
N
|
A:CYS41
|
3.9
|
12.5
|
1.0
|
HB3
|
A:SER46
|
4.0
|
15.6
|
1.0
|
HE21
|
B:GLN48
|
4.1
|
17.0
|
1.0
|
O
|
B:HOH1079
|
4.2
|
20.7
|
1.0
|
NH2
|
A:ARG56
|
4.2
|
14.0
|
1.0
|
OG
|
A:SER46
|
4.2
|
13.7
|
1.0
|
HE
|
A:ARG56
|
4.3
|
15.1
|
1.0
|
HB3
|
A:CYS41
|
4.3
|
15.1
|
1.0
|
CA
|
A:CYS41
|
4.3
|
11.4
|
1.0
|
HE
|
B:ARG56
|
4.3
|
15.1
|
1.0
|
HB2
|
A:SER46
|
4.3
|
15.6
|
1.0
|
SG
|
B:CYS41
|
4.3
|
13.0
|
1.0
|
NH2
|
B:ARG56
|
4.3
|
14.3
|
1.0
|
CB
|
A:SER46
|
4.4
|
13.0
|
1.0
|
SG
|
B:CYS38
|
4.5
|
13.1
|
1.0
|
HA
|
A:CYS41
|
4.6
|
13.7
|
1.0
|
HE21
|
A:GLN48
|
4.6
|
16.6
|
1.0
|
CA
|
A:CYS38
|
4.6
|
12.2
|
1.0
|
HE22
|
A:GLN48
|
4.6
|
16.6
|
1.0
|
CB
|
A:TYR40
|
4.7
|
12.5
|
1.0
|
HH22
|
A:ARG56
|
4.7
|
16.8
|
1.0
|
NE2
|
B:GLN48
|
4.7
|
14.2
|
1.0
|
HH22
|
B:ARG56
|
4.7
|
17.2
|
1.0
|
H
|
A:TYR40
|
4.8
|
15.6
|
1.0
|
HB2
|
B:SER46
|
4.8
|
16.0
|
1.0
|
HB2
|
B:CYS38
|
4.8
|
15.0
|
1.0
|
HG
|
B:SER46
|
4.8
|
16.6
|
1.0
|
NE
|
B:ARG56
|
4.9
|
12.5
|
1.0
|
HE22
|
B:GLN48
|
4.9
|
17.0
|
1.0
|
HB3
|
A:TYR40
|
4.9
|
15.1
|
1.0
|
NE2
|
A:GLN48
|
4.9
|
13.8
|
1.0
|
C
|
A:TYR40
|
4.9
|
12.5
|
1.0
|
HA
|
A:CYS38
|
4.9
|
14.7
|
1.0
|
HB2
|
B:PRO54
|
5.0
|
18.9
|
1.0
|
NE
|
A:ARG56
|
5.0
|
12.6
|
1.0
|
|
Iron binding site 3 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 3 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:11.8
occ:1.00
|
FE1
|
A:SF41002
|
0.0
|
11.8
|
1.0
|
S4
|
A:SF41002
|
2.3
|
12.4
|
1.0
|
SG
|
A:CYS55
|
2.3
|
12.3
|
1.0
|
S3
|
A:SF41002
|
2.3
|
12.3
|
1.0
|
S2
|
A:SF41002
|
2.3
|
11.9
|
1.0
|
FE4
|
A:SF41002
|
2.7
|
11.8
|
1.0
|
FE2
|
A:SF41002
|
2.7
|
11.5
|
1.0
|
FE3
|
A:SF41002
|
2.8
|
12.1
|
1.0
|
HB2
|
A:CYS55
|
2.8
|
14.9
|
1.0
|
CB
|
A:CYS55
|
3.1
|
12.4
|
1.0
|
H
|
A:VAL67
|
3.3
|
15.1
|
1.0
|
HB3
|
A:CYS55
|
3.7
|
14.9
|
1.0
|
HA2
|
A:GLY53
|
3.8
|
16.3
|
1.0
|
HB3
|
A:CYS47
|
3.8
|
13.4
|
1.0
|
HA3
|
A:GLY53
|
3.9
|
16.3
|
1.0
|
S1
|
A:SF41002
|
3.9
|
11.7
|
1.0
|
HA3
|
A:GLY66
|
3.9
|
16.4
|
1.0
|
N
|
A:VAL67
|
4.0
|
12.6
|
1.0
|
HB
|
A:VAL67
|
4.1
|
14.8
|
1.0
|
H
|
A:CYS68
|
4.1
|
15.0
|
1.0
|
H
|
A:CYS55
|
4.1
|
13.7
|
1.0
|
CA
|
A:GLY53
|
4.1
|
13.6
|
1.0
|
N
|
A:GLY53
|
4.2
|
12.1
|
1.0
|
H
|
A:GLY53
|
4.3
|
14.6
|
1.0
|
HG23
|
A:VAL67
|
4.3
|
16.0
|
1.0
|
CA
|
A:CYS55
|
4.3
|
12.3
|
1.0
|
N
|
A:CYS55
|
4.4
|
11.4
|
1.0
|
HA2
|
A:GLY66
|
4.4
|
16.4
|
1.0
|
HB2
|
A:ASN52
|
4.5
|
15.8
|
1.0
|
CA
|
A:GLY66
|
4.5
|
13.7
|
1.0
|
SG
|
A:CYS50
|
4.6
|
12.1
|
1.0
|
C
|
A:ASN52
|
4.6
|
13.2
|
1.0
|
CB
|
A:CYS47
|
4.6
|
11.2
|
1.0
|
SG
|
A:CYS47
|
4.7
|
11.7
|
1.0
|
C
|
A:GLY66
|
4.7
|
12.9
|
1.0
|
HA
|
A:CYS55
|
4.8
|
14.8
|
1.0
|
CB
|
A:VAL67
|
4.8
|
12.3
|
1.0
|
HB3
|
A:ASN52
|
4.8
|
15.8
|
1.0
|
SG
|
A:CYS68
|
4.8
|
12.2
|
1.0
|
HE2
|
A:MET75
|
4.9
|
14.8
|
1.0
|
O
|
A:ASN52
|
4.9
|
14.9
|
1.0
|
O
|
A:CYS47
|
4.9
|
12.2
|
1.0
|
H
|
A:CYS50
|
4.9
|
13.0
|
1.0
|
N
|
A:CYS68
|
4.9
|
12.5
|
1.0
|
CG2
|
A:VAL67
|
4.9
|
13.3
|
1.0
|
CA
|
A:VAL67
|
5.0
|
13.0
|
1.0
|
|
Iron binding site 4 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 4 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:11.5
occ:1.00
|
FE2
|
A:SF41002
|
0.0
|
11.5
|
1.0
|
SG
|
A:CYS50
|
2.3
|
12.1
|
1.0
|
S3
|
A:SF41002
|
2.3
|
12.3
|
1.0
|
S4
|
A:SF41002
|
2.3
|
12.4
|
1.0
|
S1
|
A:SF41002
|
2.3
|
11.7
|
1.0
|
FE1
|
A:SF41002
|
2.7
|
11.8
|
1.0
|
FE4
|
A:SF41002
|
2.7
|
11.8
|
1.0
|
FE3
|
A:SF41002
|
2.7
|
12.1
|
1.0
|
H
|
A:CYS50
|
3.2
|
13.0
|
1.0
|
HB3
|
A:CYS50
|
3.3
|
14.0
|
1.0
|
CB
|
A:CYS50
|
3.4
|
11.6
|
1.0
|
N
|
A:CYS50
|
3.6
|
10.8
|
1.0
|
HB2
|
A:ASN52
|
3.8
|
15.8
|
1.0
|
CA
|
A:CYS50
|
3.9
|
10.6
|
1.0
|
HG21
|
A:THR196
|
3.9
|
17.2
|
1.0
|
H
|
A:GLY53
|
3.9
|
14.6
|
1.0
|
S2
|
A:SF41002
|
3.9
|
11.9
|
1.0
|
HG1
|
A:THR196
|
3.9
|
16.1
|
1.0
|
HG23
|
A:THR196
|
4.0
|
17.2
|
1.0
|
O
|
A:CYS50
|
4.2
|
12.5
|
1.0
|
HB2
|
A:CYS50
|
4.2
|
14.0
|
1.0
|
C
|
A:CYS50
|
4.2
|
10.8
|
1.0
|
O
|
A:HOH1347
|
4.2
|
24.0
|
1.0
|
OG1
|
A:THR196
|
4.2
|
13.4
|
1.0
|
H
|
A:ASN52
|
4.3
|
15.1
|
1.0
|
N
|
A:GLY53
|
4.3
|
12.1
|
1.0
|
HB3
|
A:CYS68
|
4.4
|
14.4
|
1.0
|
HB2
|
A:LEU49
|
4.4
|
13.5
|
1.0
|
CG2
|
A:THR196
|
4.4
|
14.4
|
1.0
|
H
|
A:LEU49
|
4.4
|
12.7
|
1.0
|
C
|
A:LEU49
|
4.4
|
12.2
|
1.0
|
HA3
|
A:GLY53
|
4.5
|
16.3
|
1.0
|
CB
|
A:ASN52
|
4.7
|
13.1
|
1.0
|
H
|
A:CYS68
|
4.7
|
15.0
|
1.0
|
SG
|
A:CYS68
|
4.8
|
12.2
|
1.0
|
HA
|
A:CYS50
|
4.8
|
12.8
|
1.0
|
N
|
A:ASN52
|
4.8
|
12.5
|
1.0
|
SG
|
A:CYS55
|
4.8
|
12.3
|
1.0
|
HH22
|
A:ARG78
|
4.8
|
14.2
|
1.0
|
SG
|
A:CYS47
|
4.8
|
11.7
|
1.0
|
CA
|
A:GLY53
|
4.9
|
13.6
|
1.0
|
N
|
A:LEU49
|
4.9
|
10.6
|
1.0
|
C
|
A:ASN52
|
4.9
|
13.2
|
1.0
|
HB3
|
A:ASN52
|
4.9
|
15.8
|
1.0
|
HD22
|
A:ASN52
|
5.0
|
26.9
|
1.0
|
HB
|
A:VAL67
|
5.0
|
14.8
|
1.0
|
CB
|
A:THR196
|
5.0
|
12.2
|
1.0
|
HE3
|
B:MET555
|
5.0
|
21.9
|
0.4
|
CA
|
A:LEU49
|
5.0
|
10.8
|
1.0
|
|
Iron binding site 5 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 5 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:12.1
occ:1.00
|
FE3
|
A:SF41002
|
0.0
|
12.1
|
1.0
|
SG
|
A:CYS68
|
2.3
|
12.2
|
1.0
|
S2
|
A:SF41002
|
2.3
|
11.9
|
1.0
|
S4
|
A:SF41002
|
2.3
|
12.4
|
1.0
|
S1
|
A:SF41002
|
2.3
|
11.7
|
1.0
|
FE2
|
A:SF41002
|
2.7
|
11.5
|
1.0
|
FE4
|
A:SF41002
|
2.8
|
11.8
|
1.0
|
FE1
|
A:SF41002
|
2.8
|
11.8
|
1.0
|
H
|
A:CYS68
|
3.1
|
15.0
|
1.0
|
HB3
|
A:CYS68
|
3.1
|
14.4
|
1.0
|
CB
|
A:CYS68
|
3.3
|
12.0
|
1.0
|
HH22
|
A:ARG78
|
3.4
|
14.2
|
1.0
|
HG22
|
A:ILE70
|
3.6
|
15.3
|
1.0
|
HG23
|
A:THR196
|
3.8
|
17.2
|
1.0
|
N
|
A:CYS68
|
3.9
|
12.5
|
1.0
|
HA3
|
A:GLY66
|
3.9
|
16.4
|
1.0
|
S3
|
A:SF41002
|
4.0
|
12.3
|
1.0
|
HG21
|
A:ILE70
|
4.0
|
15.3
|
1.0
|
HB2
|
A:CYS68
|
4.0
|
14.4
|
1.0
|
CA
|
A:CYS68
|
4.2
|
11.8
|
1.0
|
H
|
A:VAL67
|
4.2
|
15.1
|
1.0
|
CG2
|
A:ILE70
|
4.2
|
12.8
|
1.0
|
NH2
|
A:ARG78
|
4.3
|
11.8
|
1.0
|
O
|
A:HOH1352
|
4.3
|
13.2
|
1.0
|
HH12
|
A:ARG78
|
4.5
|
15.2
|
1.0
|
N
|
A:VAL67
|
4.5
|
12.6
|
1.0
|
H
|
A:ILE70
|
4.5
|
15.0
|
1.0
|
HG21
|
A:THR196
|
4.5
|
17.2
|
1.0
|
CG2
|
A:THR196
|
4.6
|
14.4
|
1.0
|
SG
|
A:CYS50
|
4.6
|
12.1
|
1.0
|
HH21
|
A:ARG78
|
4.6
|
14.2
|
1.0
|
HB
|
A:ILE70
|
4.6
|
14.6
|
1.0
|
HG1
|
A:THR196
|
4.7
|
16.1
|
1.0
|
CA
|
A:GLY66
|
4.7
|
13.7
|
1.0
|
C
|
A:GLY66
|
4.7
|
12.9
|
1.0
|
O
|
A:HOH1347
|
4.7
|
24.0
|
1.0
|
SG
|
A:CYS55
|
4.8
|
12.3
|
1.0
|
HB
|
A:VAL67
|
4.8
|
14.8
|
1.0
|
SG
|
A:CYS47
|
4.8
|
11.7
|
1.0
|
H
|
A:GLY69
|
4.8
|
13.8
|
1.0
|
HB2
|
A:CYS55
|
4.9
|
14.9
|
1.0
|
HA
|
A:CYS68
|
4.9
|
14.1
|
1.0
|
HG23
|
A:ILE70
|
5.0
|
15.3
|
1.0
|
|
Iron binding site 6 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 6 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:11.8
occ:1.00
|
FE4
|
A:SF41002
|
0.0
|
11.8
|
1.0
|
S1
|
A:SF41002
|
2.3
|
11.7
|
1.0
|
SG
|
A:CYS47
|
2.3
|
11.7
|
1.0
|
S3
|
A:SF41002
|
2.3
|
12.3
|
1.0
|
S2
|
A:SF41002
|
2.3
|
11.9
|
1.0
|
FE1
|
A:SF41002
|
2.7
|
11.8
|
1.0
|
FE2
|
A:SF41002
|
2.7
|
11.5
|
1.0
|
FE3
|
A:SF41002
|
2.8
|
12.1
|
1.0
|
HB3
|
A:CYS47
|
2.8
|
13.4
|
1.0
|
HH22
|
A:ARG78
|
3.1
|
14.2
|
1.0
|
CB
|
A:CYS47
|
3.1
|
11.2
|
1.0
|
H
|
A:LEU49
|
3.3
|
12.7
|
1.0
|
HB2
|
A:LEU49
|
3.5
|
13.5
|
1.0
|
HH21
|
A:ARG78
|
3.6
|
14.2
|
1.0
|
NH2
|
A:ARG78
|
3.6
|
11.8
|
1.0
|
HB2
|
A:CYS47
|
3.7
|
13.4
|
1.0
|
HB2
|
A:CYS55
|
3.9
|
14.9
|
1.0
|
S4
|
A:SF41002
|
3.9
|
12.4
|
1.0
|
H
|
A:CYS50
|
4.0
|
13.0
|
1.0
|
N
|
A:LEU49
|
4.1
|
10.6
|
1.0
|
C
|
A:CYS47
|
4.3
|
11.2
|
1.0
|
HE2
|
A:MET75
|
4.3
|
14.8
|
1.0
|
CA
|
A:CYS47
|
4.3
|
10.8
|
1.0
|
CB
|
A:LEU49
|
4.4
|
11.2
|
1.0
|
O
|
A:CYS47
|
4.5
|
12.2
|
1.0
|
HG
|
A:LEU49
|
4.5
|
14.3
|
1.0
|
HG1
|
A:THR196
|
4.5
|
16.1
|
1.0
|
N
|
A:CYS50
|
4.6
|
10.8
|
1.0
|
HG21
|
A:ILE70
|
4.6
|
15.3
|
1.0
|
CA
|
A:LEU49
|
4.6
|
10.8
|
1.0
|
CB
|
A:CYS55
|
4.7
|
12.4
|
1.0
|
N
|
A:GLN48
|
4.7
|
11.2
|
1.0
|
SG
|
A:CYS55
|
4.7
|
12.3
|
1.0
|
CZ
|
A:ARG78
|
4.8
|
11.9
|
1.0
|
HA
|
A:CYS47
|
4.8
|
12.9
|
1.0
|
H
|
A:CYS55
|
4.8
|
13.7
|
1.0
|
SG
|
A:CYS68
|
4.9
|
12.2
|
1.0
|
H
|
A:GLN48
|
4.9
|
13.5
|
1.0
|
HG22
|
A:ILE70
|
4.9
|
15.3
|
1.0
|
SG
|
A:CYS50
|
4.9
|
12.1
|
1.0
|
HD12
|
A:LEU49
|
4.9
|
16.7
|
1.0
|
C
|
A:LEU49
|
5.0
|
12.2
|
1.0
|
HH12
|
A:ARG78
|
5.0
|
15.2
|
1.0
|
HA3
|
A:GLY53
|
5.0
|
16.3
|
1.0
|
CG
|
A:LEU49
|
5.0
|
11.9
|
1.0
|
|
Iron binding site 7 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 7 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:13.2
occ:0.50
|
FE1
|
A:SF31003
|
0.0
|
13.2
|
0.5
|
S3
|
A:SF31003
|
2.2
|
14.7
|
0.5
|
S1
|
A:SF31003
|
2.3
|
14.1
|
0.5
|
S2
|
A:SF31003
|
2.3
|
14.6
|
0.5
|
SG
|
A:CYS480
|
2.4
|
17.8
|
0.8
|
FE3
|
A:SF31003
|
2.6
|
14.5
|
0.5
|
FE4
|
A:SF31003
|
2.8
|
14.3
|
0.5
|
HB2
|
A:CYS480
|
3.2
|
18.6
|
0.8
|
CB
|
A:CYS480
|
3.4
|
15.4
|
0.8
|
H
|
A:CYS480
|
3.5
|
21.8
|
0.8
|
HD1
|
A:TRP317
|
3.6
|
21.9
|
1.0
|
HA
|
A:CYS449
|
3.7
|
22.5
|
0.9
|
HE1
|
A:HIS259
|
3.8
|
28.3
|
0.9
|
HG3
|
A:GLU295
|
3.8
|
21.6
|
0.7
|
HB3
|
A:CYS449
|
3.9
|
23.1
|
0.9
|
HB3
|
A:TRP317
|
4.0
|
23.2
|
1.0
|
FE7
|
A:SF31003
|
4.0
|
13.9
|
0.5
|
O
|
A:HOH1109
|
4.0
|
28.5
|
0.9
|
HG2
|
A:GLU295
|
4.1
|
21.6
|
0.7
|
HB3
|
A:CYS480
|
4.1
|
18.6
|
0.8
|
N
|
A:CYS480
|
4.2
|
18.1
|
0.8
|
CG
|
A:GLU295
|
4.3
|
18.0
|
0.7
|
OE1
|
A:GLU556
|
4.4
|
19.8
|
0.6
|
CA
|
A:CYS480
|
4.4
|
17.7
|
0.8
|
CD1
|
A:TRP317
|
4.4
|
18.2
|
1.0
|
CE1
|
A:HIS259
|
4.5
|
23.6
|
0.9
|
CA
|
A:CYS449
|
4.5
|
18.7
|
0.9
|
CB
|
A:CYS449
|
4.5
|
19.3
|
0.9
|
H
|
A:TRP317
|
4.5
|
22.4
|
1.0
|
HA
|
A:CYS480
|
4.6
|
21.3
|
0.8
|
H
|
A:THR450
|
4.6
|
16.0
|
1.0
|
HB
|
A:ILE294
|
4.7
|
20.6
|
0.7
|
HE1
|
A:HIS483
|
4.7
|
31.3
|
1.0
|
HB2
|
A:ASN316
|
4.7
|
22.9
|
1.0
|
NE2
|
A:HIS259
|
4.7
|
22.8
|
0.9
|
SG
|
A:CYS338
|
4.8
|
20.2
|
0.9
|
SG
|
A:CYS449
|
4.8
|
21.2
|
0.9
|
CB
|
A:TRP317
|
4.9
|
19.3
|
1.0
|
CD
|
A:GLU295
|
4.9
|
18.8
|
0.7
|
OE2
|
A:GLU295
|
5.0
|
19.6
|
0.7
|
CG
|
A:TRP317
|
5.0
|
17.1
|
1.0
|
HB2
|
A:CYS338
|
5.0
|
26.1
|
0.9
|
|
Iron binding site 8 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 8 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:14.5
occ:0.50
|
FE3
|
A:SF31003
|
0.0
|
14.5
|
0.5
|
O
|
A:HOH1109
|
2.2
|
28.5
|
0.9
|
S1
|
A:SF31003
|
2.2
|
14.1
|
0.5
|
S3
|
A:SF31003
|
2.2
|
14.7
|
0.5
|
SG
|
A:CYS338
|
2.4
|
20.2
|
0.9
|
FE1
|
A:SF31003
|
2.6
|
13.2
|
0.5
|
HE1
|
A:HIS259
|
3.3
|
28.3
|
0.9
|
HD22
|
A:ASN337
|
3.3
|
30.9
|
1.0
|
HB2
|
A:CYS338
|
3.4
|
26.1
|
0.9
|
CB
|
A:CYS338
|
3.5
|
21.8
|
0.9
|
FE4
|
A:SF31003
|
3.5
|
14.3
|
0.5
|
H
|
A:CYS338
|
3.5
|
26.2
|
0.9
|
HE3
|
A:MET555
|
3.6
|
18.4
|
0.6
|
HB3
|
A:TRP317
|
3.6
|
23.2
|
1.0
|
HE2
|
A:MET555
|
3.8
|
20.6
|
0.4
|
N
|
A:CYS338
|
3.8
|
21.9
|
0.9
|
HB2
|
A:ASN337
|
3.8
|
23.8
|
1.0
|
OE1
|
A:GLU556
|
3.9
|
19.8
|
0.6
|
HG2
|
A:GLU556
|
3.9
|
23.2
|
0.6
|
HD1
|
A:TRP317
|
4.0
|
21.9
|
1.0
|
HE1
|
A:MET555
|
4.0
|
20.6
|
0.4
|
HE1
|
A:MET555
|
4.0
|
18.4
|
0.6
|
HG2
|
A:GLU556
|
4.0
|
22.8
|
0.5
|
HG3
|
A:GLU556
|
4.1
|
23.2
|
0.6
|
CA
|
A:CYS338
|
4.2
|
21.2
|
0.9
|
CE
|
A:MET555
|
4.2
|
15.3
|
0.6
|
ND2
|
A:ASN337
|
4.2
|
25.7
|
1.0
|
S2
|
A:SF31003
|
4.2
|
14.6
|
0.5
|
CE1
|
A:HIS259
|
4.2
|
23.6
|
0.9
|
HG3
|
A:GLU556
|
4.2
|
22.8
|
0.5
|
CD1
|
A:TRP317
|
4.2
|
18.2
|
1.0
|
HB3
|
A:CYS338
|
4.3
|
26.1
|
0.9
|
HE2
|
A:MET555
|
4.3
|
18.4
|
0.6
|
CB
|
A:TRP317
|
4.4
|
19.3
|
1.0
|
HA
|
A:CYS338
|
4.4
|
25.5
|
0.9
|
CE
|
A:MET555
|
4.4
|
17.1
|
0.4
|
CG
|
A:GLU556
|
4.4
|
19.4
|
0.6
|
CG
|
A:TRP317
|
4.4
|
17.1
|
1.0
|
C
|
A:ASN337
|
4.4
|
21.6
|
1.0
|
HB2
|
A:TRP317
|
4.5
|
23.2
|
1.0
|
SG
|
A:CYS480
|
4.5
|
17.8
|
0.8
|
CG
|
A:GLU556
|
4.5
|
19.0
|
0.5
|
CD
|
A:GLU556
|
4.6
|
21.0
|
0.6
|
HD21
|
A:ASN337
|
4.7
|
30.9
|
1.0
|
HD22
|
B:ASN197
|
4.7
|
18.1
|
1.0
|
CB
|
A:ASN337
|
4.7
|
19.8
|
1.0
|
HD12
|
A:ILE294
|
4.7
|
21.8
|
0.7
|
HE3
|
A:MET555
|
4.8
|
20.6
|
0.4
|
O
|
A:ASN337
|
4.8
|
20.2
|
1.0
|
HB3
|
A:CYS449
|
4.9
|
23.1
|
0.9
|
CD
|
A:GLU556
|
4.9
|
20.4
|
0.5
|
|
Iron binding site 9 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 9 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:14.3
occ:0.50
|
FE4
|
A:SF31003
|
0.0
|
14.3
|
0.5
|
OE1
|
A:GLU556
|
2.1
|
19.8
|
0.6
|
S3
|
A:SF31003
|
2.2
|
14.7
|
0.5
|
S2
|
A:SF31003
|
2.3
|
14.6
|
0.5
|
SG
|
A:CYS449
|
2.4
|
21.2
|
0.9
|
FE1
|
A:SF31003
|
2.8
|
13.2
|
0.5
|
CD
|
A:GLU556
|
3.0
|
21.0
|
0.6
|
HB3
|
A:CYS449
|
3.0
|
23.1
|
0.9
|
OE1
|
A:GLU556
|
3.0
|
21.1
|
0.5
|
CB
|
A:CYS449
|
3.2
|
19.3
|
0.9
|
HG3
|
A:GLU556
|
3.4
|
22.8
|
0.5
|
HG3
|
A:GLU556
|
3.4
|
23.2
|
0.6
|
HA
|
A:CYS449
|
3.4
|
22.5
|
0.9
|
CD
|
A:GLU556
|
3.5
|
20.4
|
0.5
|
FE3
|
A:SF31003
|
3.5
|
14.5
|
0.5
|
O
|
A:HOH1109
|
3.7
|
28.5
|
0.9
|
CG
|
A:GLU556
|
3.7
|
19.4
|
0.6
|
OE2
|
A:GLU556
|
3.8
|
22.7
|
0.6
|
CA
|
A:CYS449
|
3.8
|
18.7
|
0.9
|
CG
|
A:GLU556
|
3.9
|
19.0
|
0.5
|
FE7
|
A:SF31003
|
4.0
|
13.9
|
0.5
|
HG2
|
A:GLU556
|
4.0
|
23.2
|
0.6
|
HB2
|
A:CYS449
|
4.1
|
23.1
|
0.9
|
HG2
|
A:GLU556
|
4.1
|
22.8
|
0.5
|
OE2
|
A:GLU556
|
4.2
|
21.4
|
0.5
|
H
|
A:GLU556
|
4.2
|
17.2
|
0.5
|
H
|
A:GLU556
|
4.2
|
17.2
|
0.6
|
HB3
|
A:MET555
|
4.2
|
15.6
|
0.6
|
HB2
|
A:LYS558
|
4.2
|
23.6
|
1.0
|
HB2
|
A:ALA559
|
4.3
|
22.9
|
1.0
|
HE3
|
A:MET555
|
4.3
|
18.4
|
0.6
|
HB2
|
A:CYS480
|
4.3
|
18.6
|
0.8
|
HB3
|
A:MET555
|
4.4
|
15.8
|
0.4
|
N
|
A:CYS449
|
4.4
|
18.7
|
0.9
|
HE2
|
A:MET555
|
4.5
|
20.6
|
0.4
|
S1
|
A:SF31003
|
4.5
|
14.1
|
0.5
|
H
|
A:CYS480
|
4.6
|
21.8
|
0.8
|
HE1
|
A:HIS259
|
4.6
|
28.3
|
0.9
|
H
|
A:ALA559
|
4.6
|
21.9
|
1.0
|
HD3
|
A:LYS558
|
4.7
|
28.4
|
1.0
|
H
|
A:CYS449
|
4.7
|
22.5
|
0.9
|
H
|
A:MET555
|
4.7
|
14.4
|
0.4
|
H
|
A:THR450
|
4.7
|
16.0
|
1.0
|
H
|
A:MET555
|
4.7
|
14.4
|
0.6
|
SG
|
A:CYS480
|
4.8
|
17.8
|
0.8
|
O
|
A:ASN448
|
4.8
|
19.2
|
1.0
|
N
|
A:GLU556
|
5.0
|
14.4
|
1.0
|
C
|
A:ASN448
|
5.0
|
20.4
|
1.0
|
|
Iron binding site 10 out
of 18 in 7b95
Go back to
Iron Binding Sites List in 7b95
Iron binding site 10 out
of 18 in the Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Coos-V with Partially Oxidized Hybrid Cluster By Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:13.9
occ:0.50
|
FE7
|
A:SF31003
|
0.0
|
13.9
|
0.5
|
OE2
|
A:GLU295
|
2.1
|
19.6
|
0.7
|
NE2
|
A:HIS259
|
2.2
|
22.8
|
0.9
|
SG
|
A:CYS521
|
2.3
|
17.4
|
0.6
|
S2
|
A:SF31003
|
2.3
|
14.6
|
0.5
|
HG3
|
A:GLU295
|
2.5
|
21.6
|
0.7
|
CD
|
A:GLU295
|
2.9
|
18.8
|
0.7
|
H
|
A:CYS521
|
3.1
|
20.5
|
0.6
|
CG
|
A:GLU295
|
3.2
|
18.0
|
0.7
|
CD2
|
A:HIS259
|
3.2
|
23.2
|
0.9
|
CE1
|
A:HIS259
|
3.2
|
23.6
|
0.9
|
HB3
|
A:CYS521
|
3.3
|
20.3
|
0.6
|
HD2
|
A:HIS259
|
3.4
|
27.9
|
0.9
|
HE1
|
A:HIS259
|
3.4
|
28.3
|
0.9
|
CB
|
A:CYS521
|
3.4
|
16.9
|
0.6
|
HA2
|
A:GLY479
|
3.7
|
20.0
|
0.7
|
HG2
|
A:GLU295
|
3.8
|
21.6
|
0.7
|
HE2
|
A:LYS558
|
3.9
|
28.0
|
1.0
|
N
|
A:CYS521
|
3.9
|
17.0
|
0.6
|
FE1
|
A:SF31003
|
4.0
|
13.2
|
0.5
|
FE4
|
A:SF31003
|
4.0
|
14.3
|
0.5
|
OE1
|
A:GLU295
|
4.1
|
19.4
|
0.7
|
HE3
|
A:LYS558
|
4.1
|
28.0
|
1.0
|
HB
|
A:THR520
|
4.1
|
20.8
|
0.8
|
HB3
|
A:GLU295
|
4.2
|
20.5
|
0.7
|
HB2
|
A:CYS521
|
4.2
|
20.3
|
0.6
|
CB
|
A:GLU295
|
4.2
|
17.1
|
0.7
|
H
|
A:CYS480
|
4.2
|
21.8
|
0.8
|
CA
|
A:CYS521
|
4.3
|
16.2
|
0.6
|
ND1
|
A:HIS259
|
4.3
|
23.6
|
0.9
|
HD3
|
A:LYS558
|
4.3
|
28.4
|
1.0
|
CG
|
A:HIS259
|
4.4
|
23.3
|
0.9
|
HB2
|
A:GLU295
|
4.4
|
20.5
|
0.7
|
CE
|
A:LYS558
|
4.4
|
23.3
|
1.0
|
H
|
A:THR522
|
4.4
|
19.7
|
0.8
|
OE1
|
A:GLU556
|
4.5
|
19.8
|
0.6
|
HA3
|
A:GLY479
|
4.5
|
20.0
|
0.7
|
CA
|
A:GLY479
|
4.5
|
16.6
|
0.7
|
S1
|
A:SF31003
|
4.6
|
14.1
|
0.5
|
HB2
|
A:LYS558
|
4.6
|
23.6
|
1.0
|
HB3
|
A:LYS558
|
4.7
|
23.6
|
1.0
|
HH
|
A:TYR91
|
4.8
|
24.2
|
1.0
|
O
|
A:HOH1109
|
4.9
|
28.5
|
0.9
|
HA
|
A:THR520
|
4.9
|
21.0
|
0.8
|
N
|
A:CYS480
|
4.9
|
18.1
|
0.8
|
CD
|
A:LYS558
|
4.9
|
23.7
|
1.0
|
|
Reference:
J.H.Jeoung,
J.Fesseler,
L.Domnik,
F.Klemke,
M.Sinnreich,
C.Teutloff,
H.Dobbek.
A Morphing [4FE-3S-No]-Cluster Within A Carbon Monoxide Dehydrogenase Scaffold. Angew.Chem.Int.Ed.Engl. V. 61 17000 2022.
ISSN: ESSN 1521-3773
PubMed: 35133707
DOI: 10.1002/ANIE.202117000
Page generated: Wed Aug 7 23:23:26 2024
|