Iron in PDB 7b97: Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Enzymatic activity of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
All present enzymatic activity of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min:
1.2.7.4;
Protein crystallography data
The structure of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min, PDB code: 7b97
was solved by
J.H.Jeoung,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.75 /
1.45
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
65.196,
108.17,
82.232,
90,
95.24,
90
|
R / Rfree (%)
|
13.4 /
17.1
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Iron atom in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
(pdb code 7b97). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 18 binding sites of Iron where determined in the
Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min, PDB code: 7b97:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 1 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:15.5
occ:1.00
|
FE1
|
A:FES1001
|
0.0
|
15.5
|
1.0
|
S2
|
A:FES1001
|
2.2
|
16.5
|
1.0
|
S1
|
A:FES1001
|
2.2
|
15.3
|
1.0
|
SG
|
B:CYS38
|
2.3
|
16.5
|
1.0
|
SG
|
B:CYS41
|
2.4
|
15.4
|
1.0
|
FE2
|
A:FES1001
|
2.7
|
15.5
|
1.0
|
HB3
|
B:CYS38
|
3.1
|
21.4
|
1.0
|
CB
|
B:CYS38
|
3.1
|
17.9
|
1.0
|
HB2
|
B:CYS38
|
3.2
|
21.4
|
1.0
|
H
|
B:CYS41
|
3.3
|
18.7
|
1.0
|
HB2
|
B:CYS41
|
3.3
|
18.4
|
1.0
|
HH21
|
B:ARG56
|
3.5
|
21.0
|
1.0
|
CB
|
B:CYS41
|
3.5
|
15.3
|
1.0
|
HG
|
B:SER46
|
3.5
|
18.1
|
1.0
|
HH21
|
A:ARG56
|
3.6
|
23.0
|
1.0
|
HB2
|
B:TYR40
|
3.8
|
18.8
|
1.0
|
N
|
B:CYS41
|
3.9
|
15.6
|
1.0
|
HB3
|
B:SER46
|
4.0
|
17.3
|
1.0
|
HE21
|
A:GLN48
|
4.1
|
18.5
|
1.0
|
HE
|
B:ARG56
|
4.1
|
19.6
|
1.0
|
CA
|
B:CYS41
|
4.3
|
14.3
|
1.0
|
HE
|
A:ARG56
|
4.3
|
20.4
|
1.0
|
HB3
|
B:CYS41
|
4.3
|
18.4
|
1.0
|
OG
|
B:SER46
|
4.3
|
15.1
|
1.0
|
NH2
|
A:ARG56
|
4.3
|
19.2
|
1.0
|
HB2
|
B:SER46
|
4.3
|
17.3
|
1.0
|
NH2
|
B:ARG56
|
4.3
|
17.5
|
1.0
|
SG
|
A:CYS41
|
4.4
|
15.8
|
1.0
|
CB
|
B:SER46
|
4.4
|
14.4
|
1.0
|
SG
|
A:CYS38
|
4.5
|
16.6
|
1.0
|
HA
|
B:CYS41
|
4.5
|
17.1
|
1.0
|
CA
|
B:CYS38
|
4.6
|
18.2
|
1.0
|
CB
|
B:TYR40
|
4.7
|
15.7
|
1.0
|
HE21
|
B:GLN48
|
4.7
|
20.7
|
1.0
|
NE2
|
A:GLN48
|
4.7
|
15.4
|
1.0
|
HH22
|
A:ARG56
|
4.7
|
23.0
|
1.0
|
HB2
|
A:SER46
|
4.8
|
19.1
|
1.0
|
HE22
|
B:GLN48
|
4.8
|
20.7
|
1.0
|
HH22
|
B:ARG56
|
4.8
|
21.0
|
1.0
|
HB2
|
A:CYS38
|
4.8
|
21.0
|
1.0
|
HG
|
A:SER46
|
4.8
|
19.4
|
1.0
|
HB3
|
B:TYR40
|
4.8
|
18.8
|
1.0
|
HB2
|
A:PRO54
|
4.9
|
24.4
|
1.0
|
HE22
|
A:GLN48
|
4.9
|
18.5
|
1.0
|
NE
|
A:ARG56
|
4.9
|
17.0
|
1.0
|
NE
|
B:ARG56
|
4.9
|
16.3
|
1.0
|
HA
|
B:CYS38
|
4.9
|
21.8
|
1.0
|
H
|
B:TYR40
|
4.9
|
19.6
|
1.0
|
C
|
B:TYR40
|
4.9
|
15.9
|
1.0
|
CZ
|
A:ARG56
|
5.0
|
17.7
|
1.0
|
|
Iron binding site 2 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 2 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:15.5
occ:1.00
|
FE2
|
A:FES1001
|
0.0
|
15.5
|
1.0
|
S1
|
A:FES1001
|
2.2
|
15.3
|
1.0
|
S2
|
A:FES1001
|
2.2
|
16.5
|
1.0
|
SG
|
A:CYS41
|
2.3
|
15.8
|
1.0
|
SG
|
A:CYS38
|
2.3
|
16.6
|
1.0
|
FE1
|
A:FES1001
|
2.7
|
15.5
|
1.0
|
HB3
|
A:CYS38
|
3.1
|
21.0
|
1.0
|
CB
|
A:CYS38
|
3.2
|
17.5
|
1.0
|
HB2
|
A:CYS38
|
3.3
|
21.0
|
1.0
|
H
|
A:CYS41
|
3.3
|
20.4
|
1.0
|
HB2
|
A:CYS41
|
3.4
|
19.0
|
1.0
|
HH21
|
A:ARG56
|
3.4
|
23.0
|
1.0
|
HG
|
A:SER46
|
3.5
|
19.4
|
1.0
|
CB
|
A:CYS41
|
3.5
|
15.8
|
1.0
|
HB2
|
A:TYR40
|
3.7
|
20.1
|
1.0
|
HH21
|
B:ARG56
|
3.7
|
21.0
|
1.0
|
N
|
A:CYS41
|
3.9
|
17.0
|
1.0
|
HB3
|
A:SER46
|
4.0
|
19.1
|
1.0
|
HE21
|
B:GLN48
|
4.0
|
20.7
|
1.0
|
O
|
B:HOH1080
|
4.2
|
25.2
|
1.0
|
HE
|
A:ARG56
|
4.2
|
20.4
|
1.0
|
OG
|
A:SER46
|
4.2
|
16.1
|
1.0
|
HB2
|
A:SER46
|
4.2
|
19.1
|
1.0
|
HB3
|
A:CYS41
|
4.3
|
19.0
|
1.0
|
CA
|
A:CYS41
|
4.3
|
16.0
|
1.0
|
NH2
|
A:ARG56
|
4.3
|
19.2
|
1.0
|
HE
|
B:ARG56
|
4.3
|
19.6
|
1.0
|
NH2
|
B:ARG56
|
4.4
|
17.5
|
1.0
|
CB
|
A:SER46
|
4.4
|
15.9
|
1.0
|
SG
|
B:CYS41
|
4.4
|
15.4
|
1.0
|
SG
|
B:CYS38
|
4.5
|
16.5
|
1.0
|
HA
|
A:CYS41
|
4.5
|
19.2
|
1.0
|
CA
|
A:CYS38
|
4.6
|
16.1
|
1.0
|
CB
|
A:TYR40
|
4.6
|
16.8
|
1.0
|
HE21
|
A:GLN48
|
4.7
|
18.5
|
1.0
|
NE2
|
B:GLN48
|
4.7
|
17.3
|
1.0
|
HE22
|
A:GLN48
|
4.7
|
18.5
|
1.0
|
HH22
|
A:ARG56
|
4.8
|
23.0
|
1.0
|
HB2
|
B:SER46
|
4.8
|
17.3
|
1.0
|
HH22
|
B:ARG56
|
4.8
|
21.0
|
1.0
|
HB2
|
B:CYS38
|
4.8
|
21.4
|
1.0
|
HG
|
B:SER46
|
4.8
|
18.1
|
1.0
|
HB3
|
A:TYR40
|
4.9
|
20.1
|
1.0
|
HE22
|
B:GLN48
|
4.9
|
20.7
|
1.0
|
H
|
A:TYR40
|
4.9
|
19.6
|
1.0
|
NE
|
B:ARG56
|
4.9
|
16.3
|
1.0
|
C
|
A:TYR40
|
4.9
|
16.6
|
1.0
|
NE
|
A:ARG56
|
4.9
|
17.0
|
1.0
|
NE2
|
A:GLN48
|
5.0
|
15.4
|
1.0
|
HA
|
A:CYS38
|
5.0
|
19.3
|
1.0
|
HD2
|
A:TYR40
|
5.0
|
23.6
|
1.0
|
|
Iron binding site 3 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 3 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:15.1
occ:1.00
|
FE1
|
A:SF41002
|
0.0
|
15.1
|
1.0
|
S4
|
A:SF41002
|
2.2
|
15.1
|
1.0
|
S3
|
A:SF41002
|
2.3
|
14.2
|
1.0
|
SG
|
A:CYS55
|
2.3
|
16.3
|
1.0
|
S2
|
A:SF41002
|
2.3
|
15.0
|
1.0
|
FE4
|
A:SF41002
|
2.7
|
14.9
|
1.0
|
FE2
|
A:SF41002
|
2.7
|
14.7
|
1.0
|
FE3
|
A:SF41002
|
2.8
|
15.3
|
1.0
|
HB2
|
A:CYS55
|
2.8
|
17.8
|
1.0
|
CB
|
A:CYS55
|
3.1
|
14.9
|
1.0
|
H
|
A:VAL67
|
3.3
|
21.6
|
1.0
|
HB3
|
A:CYS55
|
3.7
|
17.8
|
1.0
|
HB3
|
A:CYS47
|
3.8
|
18.2
|
1.0
|
HA2
|
A:GLY53
|
3.8
|
21.6
|
1.0
|
HA3
|
A:GLY53
|
3.9
|
21.6
|
1.0
|
S1
|
A:SF41002
|
3.9
|
14.7
|
1.0
|
HA3
|
A:GLY66
|
3.9
|
21.8
|
1.0
|
HB
|
A:VAL67
|
4.0
|
18.7
|
1.0
|
N
|
A:VAL67
|
4.0
|
18.0
|
1.0
|
H
|
A:CYS68
|
4.1
|
19.8
|
1.0
|
H
|
A:CYS55
|
4.1
|
18.8
|
1.0
|
CA
|
A:GLY53
|
4.1
|
18.0
|
1.0
|
N
|
A:GLY53
|
4.1
|
16.4
|
1.0
|
H
|
A:GLY53
|
4.2
|
19.7
|
1.0
|
CA
|
A:CYS55
|
4.3
|
14.9
|
1.0
|
HG23
|
A:VAL67
|
4.3
|
20.3
|
1.0
|
N
|
A:CYS55
|
4.3
|
15.6
|
1.0
|
HA2
|
A:GLY66
|
4.4
|
21.8
|
1.0
|
CA
|
A:GLY66
|
4.5
|
18.1
|
1.0
|
HB2
|
A:ASN52
|
4.5
|
21.5
|
1.0
|
CB
|
A:CYS47
|
4.6
|
15.2
|
1.0
|
C
|
A:ASN52
|
4.6
|
16.8
|
1.0
|
SG
|
A:CYS50
|
4.6
|
15.6
|
1.0
|
SG
|
A:CYS47
|
4.6
|
14.6
|
1.0
|
C
|
A:GLY66
|
4.7
|
17.3
|
1.0
|
CB
|
A:VAL67
|
4.7
|
15.6
|
1.0
|
HA
|
A:CYS55
|
4.8
|
17.9
|
1.0
|
HB3
|
A:ASN52
|
4.8
|
21.5
|
1.0
|
HE2
|
A:MET75
|
4.8
|
21.0
|
1.0
|
O
|
A:ASN52
|
4.8
|
18.5
|
1.0
|
SG
|
A:CYS68
|
4.9
|
16.0
|
1.0
|
O
|
A:CYS47
|
4.9
|
15.1
|
1.0
|
N
|
A:CYS68
|
4.9
|
16.5
|
1.0
|
CA
|
A:VAL67
|
4.9
|
16.3
|
1.0
|
CG2
|
A:VAL67
|
5.0
|
16.9
|
1.0
|
H
|
A:CYS50
|
5.0
|
17.5
|
1.0
|
|
Iron binding site 4 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 4 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:14.7
occ:1.00
|
FE2
|
A:SF41002
|
0.0
|
14.7
|
1.0
|
S3
|
A:SF41002
|
2.3
|
14.2
|
1.0
|
SG
|
A:CYS50
|
2.3
|
15.6
|
1.0
|
S4
|
A:SF41002
|
2.3
|
15.1
|
1.0
|
S1
|
A:SF41002
|
2.3
|
14.7
|
1.0
|
FE4
|
A:SF41002
|
2.7
|
14.9
|
1.0
|
FE1
|
A:SF41002
|
2.7
|
15.1
|
1.0
|
FE3
|
A:SF41002
|
2.7
|
15.3
|
1.0
|
H
|
A:CYS50
|
3.3
|
17.5
|
1.0
|
HB3
|
A:CYS50
|
3.3
|
16.7
|
1.0
|
CB
|
A:CYS50
|
3.3
|
13.9
|
1.0
|
N
|
A:CYS50
|
3.6
|
14.6
|
1.0
|
HB2
|
A:ASN52
|
3.8
|
21.5
|
1.0
|
H
|
A:GLY53
|
3.8
|
19.7
|
1.0
|
CA
|
A:CYS50
|
3.9
|
13.5
|
1.0
|
S2
|
A:SF41002
|
3.9
|
15.0
|
1.0
|
HG1
|
A:THR196
|
3.9
|
20.3
|
1.0
|
HG21
|
A:THR196
|
3.9
|
19.7
|
1.0
|
HG23
|
A:THR196
|
4.1
|
19.7
|
1.0
|
HB2
|
A:CYS50
|
4.2
|
16.7
|
1.0
|
O
|
A:CYS50
|
4.2
|
15.1
|
1.0
|
C
|
A:CYS50
|
4.2
|
13.9
|
1.0
|
O
|
A:HOH1249
|
4.2
|
25.6
|
1.0
|
H
|
A:ASN52
|
4.3
|
20.4
|
1.0
|
N
|
A:GLY53
|
4.3
|
16.4
|
1.0
|
OG1
|
A:THR196
|
4.3
|
16.9
|
1.0
|
HB3
|
A:CYS68
|
4.3
|
16.5
|
1.0
|
H
|
A:LEU49
|
4.4
|
17.5
|
1.0
|
HB2
|
A:LEU49
|
4.4
|
16.6
|
1.0
|
CG2
|
A:THR196
|
4.4
|
16.4
|
1.0
|
HA3
|
A:GLY53
|
4.5
|
21.6
|
1.0
|
C
|
A:LEU49
|
4.5
|
15.4
|
1.0
|
CB
|
A:ASN52
|
4.6
|
17.9
|
1.0
|
H
|
A:CYS68
|
4.7
|
19.8
|
1.0
|
N
|
A:ASN52
|
4.8
|
17.0
|
1.0
|
SG
|
A:CYS68
|
4.8
|
16.0
|
1.0
|
HA
|
A:CYS50
|
4.8
|
16.2
|
1.0
|
HH22
|
A:ARG78
|
4.8
|
18.6
|
1.0
|
SG
|
A:CYS47
|
4.8
|
14.6
|
1.0
|
SG
|
A:CYS55
|
4.8
|
16.3
|
1.0
|
N
|
A:LEU49
|
4.8
|
14.6
|
1.0
|
C
|
A:ASN52
|
4.8
|
16.8
|
1.0
|
CA
|
A:GLY53
|
4.8
|
18.0
|
1.0
|
HB3
|
A:ASN52
|
4.9
|
21.5
|
1.0
|
HB
|
A:VAL67
|
4.9
|
18.7
|
1.0
|
HD22
|
A:ASN52
|
5.0
|
30.3
|
1.0
|
|
Iron binding site 5 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 5 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:15.3
occ:1.00
|
FE3
|
A:SF41002
|
0.0
|
15.3
|
1.0
|
S2
|
A:SF41002
|
2.3
|
15.0
|
1.0
|
S4
|
A:SF41002
|
2.3
|
15.1
|
1.0
|
S1
|
A:SF41002
|
2.3
|
14.7
|
1.0
|
SG
|
A:CYS68
|
2.3
|
16.0
|
1.0
|
FE4
|
A:SF41002
|
2.7
|
14.9
|
1.0
|
FE2
|
A:SF41002
|
2.7
|
14.7
|
1.0
|
FE1
|
A:SF41002
|
2.8
|
15.1
|
1.0
|
H
|
A:CYS68
|
3.1
|
19.8
|
1.0
|
HB3
|
A:CYS68
|
3.1
|
16.5
|
1.0
|
CB
|
A:CYS68
|
3.3
|
13.8
|
1.0
|
HH22
|
A:ARG78
|
3.4
|
18.6
|
1.0
|
HG22
|
A:ILE70
|
3.7
|
19.7
|
1.0
|
HG23
|
A:THR196
|
3.8
|
19.7
|
1.0
|
N
|
A:CYS68
|
3.9
|
16.5
|
1.0
|
HA3
|
A:GLY66
|
3.9
|
21.8
|
1.0
|
S3
|
A:SF41002
|
3.9
|
14.2
|
1.0
|
HG21
|
A:ILE70
|
4.0
|
19.7
|
1.0
|
HB2
|
A:CYS68
|
4.1
|
16.5
|
1.0
|
H
|
A:VAL67
|
4.2
|
21.6
|
1.0
|
NH2
|
A:ARG78
|
4.2
|
15.5
|
1.0
|
CA
|
A:CYS68
|
4.2
|
15.1
|
1.0
|
CG2
|
A:ILE70
|
4.3
|
16.4
|
1.0
|
O
|
A:HOH1344
|
4.3
|
15.1
|
1.0
|
N
|
A:VAL67
|
4.5
|
18.0
|
1.0
|
H
|
A:ILE70
|
4.5
|
19.6
|
1.0
|
HH12
|
A:ARG78
|
4.5
|
17.8
|
1.0
|
HH21
|
A:ARG78
|
4.6
|
18.6
|
1.0
|
HG21
|
A:THR196
|
4.6
|
19.7
|
1.0
|
SG
|
A:CYS50
|
4.6
|
15.6
|
1.0
|
HB
|
A:ILE70
|
4.6
|
19.4
|
1.0
|
CG2
|
A:THR196
|
4.7
|
16.4
|
1.0
|
HG1
|
A:THR196
|
4.7
|
20.3
|
1.0
|
CA
|
A:GLY66
|
4.7
|
18.1
|
1.0
|
HB
|
A:VAL67
|
4.7
|
18.7
|
1.0
|
C
|
A:GLY66
|
4.7
|
17.3
|
1.0
|
O
|
A:HOH1249
|
4.8
|
25.6
|
1.0
|
SG
|
A:CYS55
|
4.8
|
16.3
|
1.0
|
SG
|
A:CYS47
|
4.8
|
14.6
|
1.0
|
H
|
A:GLY69
|
4.9
|
18.9
|
1.0
|
HB2
|
A:CYS55
|
4.9
|
17.8
|
1.0
|
HA
|
A:CYS68
|
4.9
|
18.2
|
1.0
|
HB3
|
A:CYS47
|
5.0
|
18.2
|
1.0
|
C
|
A:VAL67
|
5.0
|
16.4
|
1.0
|
|
Iron binding site 6 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 6 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:14.9
occ:1.00
|
FE4
|
A:SF41002
|
0.0
|
14.9
|
1.0
|
S3
|
A:SF41002
|
2.3
|
14.2
|
1.0
|
S1
|
A:SF41002
|
2.3
|
14.7
|
1.0
|
SG
|
A:CYS47
|
2.3
|
14.6
|
1.0
|
S2
|
A:SF41002
|
2.3
|
15.0
|
1.0
|
FE1
|
A:SF41002
|
2.7
|
15.1
|
1.0
|
FE2
|
A:SF41002
|
2.7
|
14.7
|
1.0
|
FE3
|
A:SF41002
|
2.7
|
15.3
|
1.0
|
HB3
|
A:CYS47
|
2.8
|
18.2
|
1.0
|
CB
|
A:CYS47
|
3.1
|
15.2
|
1.0
|
HH22
|
A:ARG78
|
3.2
|
18.6
|
1.0
|
H
|
A:LEU49
|
3.3
|
17.5
|
1.0
|
HB2
|
A:LEU49
|
3.5
|
16.6
|
1.0
|
HH21
|
A:ARG78
|
3.6
|
18.6
|
1.0
|
NH2
|
A:ARG78
|
3.6
|
15.5
|
1.0
|
HB2
|
A:CYS47
|
3.7
|
18.2
|
1.0
|
S4
|
A:SF41002
|
3.8
|
15.1
|
1.0
|
HB2
|
A:CYS55
|
3.9
|
17.8
|
1.0
|
H
|
A:CYS50
|
4.1
|
17.5
|
1.0
|
N
|
A:LEU49
|
4.1
|
14.6
|
1.0
|
HE2
|
A:MET75
|
4.2
|
21.0
|
1.0
|
C
|
A:CYS47
|
4.3
|
14.5
|
1.0
|
CA
|
A:CYS47
|
4.3
|
14.5
|
1.0
|
CB
|
A:LEU49
|
4.4
|
13.8
|
1.0
|
O
|
A:CYS47
|
4.5
|
15.1
|
1.0
|
HG1
|
A:THR196
|
4.5
|
20.3
|
1.0
|
HG
|
A:LEU49
|
4.6
|
16.8
|
1.0
|
N
|
A:CYS50
|
4.6
|
14.6
|
1.0
|
HG21
|
A:ILE70
|
4.6
|
19.7
|
1.0
|
CA
|
A:LEU49
|
4.7
|
15.2
|
1.0
|
N
|
A:GLN48
|
4.7
|
14.6
|
1.0
|
CB
|
A:CYS55
|
4.7
|
14.9
|
1.0
|
SG
|
A:CYS55
|
4.7
|
16.3
|
1.0
|
HD12
|
A:LEU49
|
4.8
|
18.7
|
1.0
|
HA
|
A:CYS47
|
4.8
|
17.4
|
1.0
|
CZ
|
A:ARG78
|
4.8
|
13.2
|
1.0
|
H
|
A:CYS55
|
4.9
|
18.8
|
1.0
|
H
|
A:GLN48
|
4.9
|
17.5
|
1.0
|
SG
|
A:CYS50
|
4.9
|
15.6
|
1.0
|
SG
|
A:CYS68
|
4.9
|
16.0
|
1.0
|
HG22
|
A:ILE70
|
4.9
|
19.7
|
1.0
|
C
|
A:LEU49
|
5.0
|
15.4
|
1.0
|
HA3
|
A:GLY53
|
5.0
|
21.6
|
1.0
|
CG
|
A:LEU49
|
5.0
|
14.0
|
1.0
|
|
Iron binding site 7 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 7 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:24.0
occ:0.55
|
FE1
|
A:T2N1003
|
0.0
|
24.0
|
0.6
|
O2
|
A:T2N1003
|
1.6
|
18.0
|
0.7
|
O1
|
A:T2N1003
|
2.0
|
32.4
|
0.9
|
O
|
A:HOH1103
|
2.2
|
16.4
|
1.0
|
S
|
A:H2S1004
|
2.3
|
18.9
|
0.5
|
HB3
|
A:CYS521
|
3.1
|
30.0
|
0.4
|
SG
|
A:CYS521
|
3.1
|
21.7
|
0.6
|
FE2
|
A:T2N1003
|
3.2
|
22.9
|
0.5
|
FE3
|
A:T2N1003
|
3.2
|
18.6
|
0.7
|
HB2
|
A:CYS521
|
3.4
|
27.0
|
0.6
|
HE2
|
A:HIS259
|
3.4
|
32.7
|
1.0
|
SG
|
A:CYS521
|
3.4
|
25.8
|
0.4
|
H
|
A:CYS480
|
3.6
|
24.9
|
0.9
|
OE2
|
A:GLU295
|
3.6
|
20.4
|
0.8
|
CB
|
A:CYS521
|
3.7
|
25.0
|
0.4
|
HA
|
A:CYS449
|
3.7
|
26.1
|
1.0
|
CB
|
A:CYS521
|
3.8
|
22.5
|
0.6
|
HB2
|
A:LYS558
|
3.8
|
28.9
|
1.0
|
S2
|
A:T2N1003
|
3.9
|
20.2
|
0.8
|
HG3
|
A:GLU295
|
4.0
|
24.9
|
0.8
|
HA2
|
A:GLY479
|
4.1
|
26.5
|
1.0
|
SG
|
A:CYS449
|
4.1
|
25.0
|
1.0
|
HA3
|
A:GLY479
|
4.1
|
26.5
|
1.0
|
O
|
A:ASN448
|
4.2
|
20.9
|
1.0
|
HB2
|
A:CYS521
|
4.2
|
30.0
|
0.4
|
NE2
|
A:HIS259
|
4.2
|
27.2
|
1.0
|
H
|
A:CYS521
|
4.3
|
26.7
|
0.6
|
H
|
A:CYS521
|
4.3
|
26.7
|
0.4
|
HB3
|
A:CYS521
|
4.3
|
27.0
|
0.6
|
HB3
|
A:LYS558
|
4.4
|
28.9
|
1.0
|
HB2
|
A:CYS480
|
4.4
|
24.3
|
0.9
|
CD
|
A:GLU295
|
4.4
|
20.8
|
0.8
|
N
|
A:CYS480
|
4.4
|
20.7
|
0.9
|
HB3
|
A:CYS449
|
4.4
|
28.2
|
1.0
|
HD3
|
A:LYS558
|
4.4
|
35.1
|
1.0
|
CA
|
A:CYS449
|
4.4
|
21.8
|
1.0
|
O
|
A:HOH1118
|
4.5
|
31.1
|
1.0
|
CB
|
A:CYS449
|
4.5
|
23.5
|
1.0
|
OE1
|
A:GLU556
|
4.5
|
41.0
|
1.0
|
CA
|
A:GLY479
|
4.5
|
22.1
|
1.0
|
CB
|
A:LYS558
|
4.5
|
24.1
|
1.0
|
CG
|
A:GLU295
|
4.6
|
20.8
|
0.8
|
HG
|
A:CYS521
|
4.6
|
30.9
|
0.4
|
S3
|
A:T2N1003
|
4.6
|
20.6
|
0.8
|
FE4
|
A:T2N1003
|
4.6
|
18.7
|
0.6
|
HB2
|
A:ALA559
|
4.6
|
21.8
|
1.0
|
C
|
A:ASN448
|
4.6
|
22.8
|
1.0
|
HE1
|
A:HIS259
|
4.7
|
33.3
|
1.0
|
N
|
A:CYS449
|
4.7
|
21.7
|
1.0
|
HG2
|
A:GLU295
|
4.8
|
24.9
|
0.8
|
CE1
|
A:HIS259
|
4.9
|
27.7
|
1.0
|
N
|
A:CYS521
|
5.0
|
22.2
|
1.0
|
CA
|
A:CYS521
|
5.0
|
23.1
|
0.4
|
|
Iron binding site 8 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 8 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:22.9
occ:0.51
|
FE2
|
A:T2N1003
|
0.0
|
22.9
|
0.5
|
OE1
|
A:GLU556
|
1.7
|
41.0
|
1.0
|
O1
|
A:T2N1003
|
1.7
|
32.4
|
0.9
|
S2
|
A:T2N1003
|
2.2
|
20.2
|
0.8
|
SG
|
A:CYS449
|
2.4
|
25.0
|
1.0
|
CD
|
A:GLU556
|
2.7
|
35.2
|
1.0
|
HB3
|
A:CYS449
|
2.9
|
28.2
|
1.0
|
OE2
|
A:GLU556
|
3.1
|
41.0
|
1.0
|
FE1
|
A:T2N1003
|
3.2
|
24.0
|
0.6
|
O
|
A:HOH1118
|
3.3
|
31.1
|
1.0
|
CB
|
A:CYS449
|
3.3
|
23.5
|
1.0
|
FE4
|
A:T2N1003
|
3.4
|
18.7
|
0.6
|
H
|
A:GLU556
|
3.5
|
20.2
|
1.0
|
HB3
|
A:MET555
|
3.5
|
19.1
|
0.5
|
HE3
|
A:MET555
|
3.6
|
23.4
|
0.5
|
FE3
|
A:T2N1003
|
3.6
|
18.6
|
0.7
|
HB3
|
A:MET555
|
3.6
|
19.4
|
0.5
|
HE2
|
A:MET555
|
3.7
|
23.1
|
0.5
|
O2
|
A:T2N1003
|
3.7
|
18.0
|
0.7
|
HB2
|
A:LYS558
|
3.7
|
28.9
|
1.0
|
CG
|
A:GLU556
|
4.0
|
28.4
|
1.0
|
HG2
|
A:GLU556
|
4.0
|
34.1
|
1.0
|
HB2
|
A:CYS449
|
4.0
|
28.2
|
1.0
|
S
|
A:H2S1004
|
4.1
|
18.9
|
0.5
|
HA
|
A:CYS449
|
4.1
|
26.1
|
1.0
|
N
|
A:GLU556
|
4.2
|
16.8
|
1.0
|
H
|
A:MET555
|
4.2
|
19.0
|
0.5
|
H
|
A:MET555
|
4.2
|
19.0
|
0.5
|
CA
|
A:CYS449
|
4.3
|
21.8
|
1.0
|
CB
|
A:MET555
|
4.3
|
16.0
|
0.5
|
H
|
A:ALA559
|
4.4
|
22.7
|
1.0
|
HB2
|
A:MET555
|
4.4
|
19.1
|
0.5
|
HB2
|
A:ALA559
|
4.4
|
21.8
|
1.0
|
CE
|
A:MET555
|
4.5
|
19.5
|
0.5
|
HG3
|
A:GLU556
|
4.5
|
34.1
|
1.0
|
CB
|
A:MET555
|
4.6
|
16.1
|
0.5
|
CE
|
A:MET555
|
4.6
|
19.2
|
0.5
|
CB
|
A:LYS558
|
4.7
|
24.1
|
1.0
|
HD3
|
A:LYS558
|
4.7
|
35.1
|
1.0
|
HE3
|
A:MET555
|
4.7
|
23.1
|
0.5
|
HD22
|
A:ASN337
|
4.7
|
31.6
|
1.0
|
H
|
A:LYS558
|
4.8
|
21.4
|
1.0
|
HE1
|
A:MET555
|
4.8
|
23.4
|
0.5
|
H
|
A:THR450
|
4.9
|
19.9
|
1.0
|
S3
|
A:T2N1003
|
4.9
|
20.6
|
0.8
|
CA
|
A:GLU556
|
4.9
|
19.2
|
1.0
|
HG3
|
A:LYS558
|
4.9
|
32.4
|
1.0
|
CB
|
A:GLU556
|
4.9
|
24.8
|
1.0
|
O
|
A:HOH1103
|
4.9
|
16.4
|
1.0
|
N
|
A:MET555
|
4.9
|
15.8
|
1.0
|
O
|
A:GLU556
|
5.0
|
19.1
|
1.0
|
N
|
A:CYS449
|
5.0
|
21.7
|
1.0
|
|
Iron binding site 9 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 9 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:18.6
occ:0.68
|
FE3
|
A:T2N1003
|
0.0
|
18.6
|
0.7
|
O2
|
A:T2N1003
|
2.0
|
18.0
|
0.7
|
S2
|
A:T2N1003
|
2.2
|
20.2
|
0.8
|
S3
|
A:T2N1003
|
2.3
|
20.6
|
0.8
|
SG
|
A:CYS480
|
2.3
|
20.6
|
0.9
|
FE4
|
A:T2N1003
|
2.6
|
18.7
|
0.6
|
HB2
|
A:CYS480
|
3.1
|
24.3
|
0.9
|
FE1
|
A:T2N1003
|
3.2
|
24.0
|
0.6
|
O1
|
A:T2N1003
|
3.3
|
32.4
|
0.9
|
CB
|
A:CYS480
|
3.3
|
20.2
|
0.9
|
H
|
A:CYS480
|
3.4
|
24.9
|
0.9
|
HD1
|
A:TRP317
|
3.5
|
22.4
|
1.0
|
FE2
|
A:T2N1003
|
3.6
|
22.9
|
0.5
|
HA
|
A:CYS449
|
3.7
|
26.1
|
1.0
|
HB3
|
A:CYS449
|
3.8
|
28.2
|
1.0
|
HB3
|
A:TRP317
|
3.9
|
22.9
|
1.0
|
HG2
|
A:GLU295
|
4.0
|
24.9
|
0.8
|
HB3
|
A:CYS480
|
4.0
|
24.3
|
0.9
|
O
|
A:HOH1118
|
4.0
|
31.1
|
1.0
|
N
|
A:CYS480
|
4.1
|
20.7
|
0.9
|
HG3
|
A:GLU295
|
4.1
|
24.9
|
0.8
|
O
|
A:HOH1103
|
4.2
|
16.4
|
1.0
|
HE1
|
A:HIS259
|
4.2
|
33.3
|
1.0
|
CA
|
A:CYS480
|
4.2
|
21.6
|
0.9
|
CD1
|
A:TRP317
|
4.3
|
18.7
|
1.0
|
CA
|
A:CYS449
|
4.4
|
21.8
|
1.0
|
CB
|
A:CYS449
|
4.5
|
23.5
|
1.0
|
H
|
A:TRP317
|
4.5
|
24.7
|
1.0
|
CG
|
A:GLU295
|
4.5
|
20.8
|
0.8
|
HA
|
A:CYS480
|
4.5
|
25.9
|
0.9
|
HE1
|
A:HIS483
|
4.5
|
30.7
|
1.0
|
H
|
A:THR450
|
4.5
|
19.9
|
1.0
|
HE2
|
A:HIS259
|
4.6
|
32.7
|
1.0
|
HB2
|
A:ASN316
|
4.6
|
24.9
|
1.0
|
HB
|
A:ILE294
|
4.7
|
26.5
|
1.0
|
CB
|
A:TRP317
|
4.8
|
19.1
|
1.0
|
SG
|
A:CYS338
|
4.8
|
22.4
|
1.0
|
CE1
|
A:HIS259
|
4.8
|
27.7
|
1.0
|
OE1
|
A:GLU556
|
4.9
|
41.0
|
1.0
|
HG22
|
A:THR450
|
4.9
|
24.1
|
1.0
|
CG
|
A:TRP317
|
4.9
|
17.8
|
1.0
|
CD
|
A:GLU295
|
5.0
|
20.8
|
0.8
|
|
Iron binding site 10 out
of 18 in 7b97
Go back to
Iron Binding Sites List in 7b97
Iron binding site 10 out
of 18 in the Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Coos-V with Oxidized Hybrid Cluster By Hydroxylamine For 30 Min within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:18.7
occ:0.64
|
FE4
|
A:T2N1003
|
0.0
|
18.7
|
0.6
|
O
|
A:HOH1118
|
2.1
|
31.1
|
1.0
|
S2
|
A:T2N1003
|
2.2
|
20.2
|
0.8
|
S3
|
A:T2N1003
|
2.2
|
20.6
|
0.8
|
SG
|
A:CYS338
|
2.4
|
22.4
|
1.0
|
FE3
|
A:T2N1003
|
2.6
|
18.6
|
0.7
|
HB2
|
A:CYS338
|
3.4
|
26.7
|
1.0
|
HD22
|
A:ASN337
|
3.4
|
31.6
|
1.0
|
O1
|
A:T2N1003
|
3.4
|
32.4
|
0.9
|
FE2
|
A:T2N1003
|
3.4
|
22.9
|
0.5
|
HE1
|
A:HIS259
|
3.4
|
33.3
|
1.0
|
CB
|
A:CYS338
|
3.5
|
22.2
|
1.0
|
HB3
|
A:TRP317
|
3.6
|
22.9
|
1.0
|
H
|
A:CYS338
|
3.6
|
26.6
|
1.0
|
HE3
|
A:MET555
|
3.6
|
23.4
|
0.5
|
HE2
|
A:MET555
|
3.7
|
23.1
|
0.5
|
OE1
|
A:GLU556
|
3.8
|
41.0
|
1.0
|
HB2
|
A:ASN337
|
3.9
|
23.9
|
1.0
|
N
|
A:CYS338
|
3.9
|
22.2
|
1.0
|
HD1
|
A:TRP317
|
3.9
|
22.4
|
1.0
|
HE1
|
A:MET555
|
4.0
|
23.1
|
0.5
|
HE1
|
A:MET555
|
4.1
|
23.4
|
0.5
|
CD1
|
A:TRP317
|
4.2
|
18.7
|
1.0
|
O2
|
A:T2N1003
|
4.2
|
18.0
|
0.7
|
CA
|
A:CYS338
|
4.2
|
22.0
|
1.0
|
CE
|
A:MET555
|
4.2
|
19.5
|
0.5
|
ND2
|
A:ASN337
|
4.2
|
26.3
|
1.0
|
CB
|
A:TRP317
|
4.3
|
19.1
|
1.0
|
CE
|
A:MET555
|
4.3
|
19.2
|
0.5
|
HB3
|
A:CYS338
|
4.3
|
26.7
|
1.0
|
CG
|
A:TRP317
|
4.3
|
17.8
|
1.0
|
CE1
|
A:HIS259
|
4.3
|
27.7
|
1.0
|
HE2
|
A:MET555
|
4.4
|
23.4
|
0.5
|
CD
|
A:GLU556
|
4.4
|
35.2
|
1.0
|
HB2
|
A:TRP317
|
4.4
|
22.9
|
1.0
|
HA
|
A:CYS338
|
4.4
|
26.4
|
1.0
|
SG
|
A:CYS480
|
4.4
|
20.6
|
0.9
|
OE2
|
A:GLU556
|
4.5
|
41.0
|
1.0
|
C
|
A:ASN337
|
4.5
|
22.2
|
1.0
|
HE3
|
A:MET555
|
4.6
|
23.1
|
0.5
|
FE1
|
A:T2N1003
|
4.6
|
24.0
|
0.6
|
HD12
|
A:ILE294
|
4.7
|
27.1
|
1.0
|
HD21
|
A:ASN337
|
4.7
|
31.6
|
1.0
|
HD22
|
B:ASN197
|
4.7
|
18.2
|
1.0
|
HB3
|
A:CYS449
|
4.7
|
28.2
|
1.0
|
CB
|
A:ASN337
|
4.8
|
19.9
|
1.0
|
HE2
|
A:HIS259
|
4.8
|
32.7
|
1.0
|
NE1
|
A:TRP317
|
4.9
|
19.0
|
1.0
|
O
|
A:ASN337
|
5.0
|
22.1
|
1.0
|
HD13
|
A:ILE294
|
5.0
|
27.1
|
1.0
|
|
Reference:
J.H.Jeoung,
J.Fesseler,
L.Domnik,
F.Klemke,
M.Sinnreich,
C.Teutloff,
H.Dobbek.
A Morphing [4FE-3S-No]-Cluster Within A Carbon Monoxide Dehydrogenase Scaffold. Angew.Chem.Int.Ed.Engl. V. 61 17000 2022.
ISSN: ESSN 1521-3773
PubMed: 35133707
DOI: 10.1002/ANIE.202117000
Page generated: Wed Aug 7 23:25:05 2024
|