Iron in PDB 7bhb: Escherichia Coli Ytfe E159L

The structure of Escherichia Coli Ytfe E159L, PDB code: 7bhb was solved by L.S.O.Silva, P.M.Matias, C.V.Romao, M.L.Saraiva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.40 / 2.36
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	86.814, 51.418, 54.956, 90, 90.1, 90
R / Rfree (%)	25.2 / 29.6

The binding sites of Iron atom in the Escherichia Coli Ytfe E159L (pdb code 7bhb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Escherichia Coli Ytfe E159L, PDB code: 7bhb:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Escherichia Coli Ytfe E159L


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Escherichia Coli Ytfe E159L within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:84.4 occ:1.00 OE2 A:GLU208 1.9 14.7 1.0 OE1 A:GLU133 2.0 61.7 1.0 NE2 A:HIS204 2.4 38.0 1.0 CD A:GLU208 2.5 23.1 1.0 OE1 A:GLU208 2.5 27.1 1.0 CD A:GLU133 2.6 69.0 1.0 OE2 A:GLU133 2.6 73.9 1.0 NE2 A:HIS84 2.7 38.0 1.0 HE1 A:HIS204 2.7 56.8 1.0 CE1 A:HIS204 2.8 45.8 1.0 O A:HOH403 3.2 8.1 1.0 HE2 A:HIS160 3.5 67.0 1.0 CE1 A:HIS84 3.5 31.0 1.0 CD2 A:HIS204 3.6 56.7 1.0 HE1 A:HIS84 3.6 39.0 1.0 CD2 A:HIS84 3.7 44.1 1.0 HZ A:PHE138 3.9 20.2 1.0 HG2 A:MET130 3.9 51.2 1.0 HD2 A:HIS84 3.9 54.7 1.0 HD2 A:HIS204 4.0 69.8 1.0 CG A:GLU208 4.0 30.9 1.0 ND1 A:HIS204 4.0 17.4 1.0 HG21 A:ILE79 4.1 62.1 1.0 CG A:GLU133 4.1 30.4 1.0 HG3 A:GLU208 4.3 38.9 1.0 NE2 A:HIS160 4.3 54.4 1.0 HA A:MET130 4.4 49.2 1.0 HG2 A:GLU208 4.4 38.9 1.0 CG A:HIS204 4.4 25.4 1.0 HB2 A:GLU133 4.4 62.0 1.0 HG3 A:GLU133 4.5 38.3 1.0 HB3 A:GLU133 4.6 62.0 1.0 HG22 A:ILE79 4.6 62.1 1.0 HG2 A:GLU133 4.6 38.3 1.0 CZ A:PHE138 4.6 15.3 1.0 CB A:GLU133 4.7 50.2 1.0 CG2 A:ILE79 4.7 50.2 1.0 HD1 A:HIS204 4.7 22.7 1.0 ND1 A:HIS84 4.7 37.1 1.0 CG A:MET130 4.8 41.2 1.0 HG23 A:ILE79 4.8 62.1 1.0 CG A:HIS84 4.8 35.0 1.0 HE2 A:MET130 5.0 56.0 1.0 HE2 A:PHE138 5.0 23.9 1.0

Iron binding site 2 out of 2 in the Escherichia Coli Ytfe E159L


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Escherichia Coli Ytfe E159L within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:14.3 occ:1.00 OE1 B:GLU133 2.0 73.6 1.0 OE1 B:GLU208 2.1 5.4 1.0 NE2 B:HIS204 2.2 40.6 1.0 HE1 B:HIS204 2.5 56.7 1.0 OE2 B:GLU208 2.5 14.0 1.0 NE2 B:HIS84 2.6 64.4 1.0 CD B:GLU208 2.6 12.2 1.0 OE2 B:GLU133 2.6 80.2 1.0 CD B:GLU133 2.6 78.8 1.0 CE1 B:HIS204 2.7 45.8 1.0 O B:HOH402 3.2 11.8 1.0 CE1 B:HIS84 3.3 31.6 1.0 HE1 B:HIS84 3.4 39.8 1.0 CD2 B:HIS204 3.5 61.5 1.0 HZ B:PHE138 3.6 45.5 1.0 HG2 B:MET130 3.6 85.2 1.0 HE2 B:HIS160 3.6 70.8 1.0 CD2 B:HIS84 3.7 63.7 1.0 HD2 B:HIS84 3.9 78.3 1.0 ND1 B:HIS204 3.9 37.1 1.0 HG21 B:ILE79 3.9 83.0 1.0 HD2 B:HIS204 4.0 75.6 1.0 CG B:GLU208 4.1 34.1 1.0 CG B:GLU133 4.1 56.2 1.0 HA B:MET130 4.1 44.4 1.0 HG3 B:GLU208 4.3 42.8 1.0 CG B:HIS204 4.3 32.1 1.0 CZ B:PHE138 4.4 36.4 1.0 HB2 B:GLU133 4.4 54.5 1.0 HG22 B:ILE79 4.4 83.0 1.0 HG2 B:GLU208 4.4 42.8 1.0 NE2 B:HIS160 4.5 57.5 1.0 ND1 B:HIS84 4.5 36.8 1.0 CG2 B:ILE79 4.5 67.6 1.0 HD1 B:HIS204 4.5 46.3 1.0 HG2 B:GLU133 4.5 69.2 1.0 HG3 B:GLU133 4.6 69.2 1.0 CG B:MET130 4.6 69.5 1.0 HB3 B:GLU133 4.6 54.5 1.0 CB B:GLU133 4.7 43.9 1.0 CG B:HIS84 4.7 42.5 1.0 HG23 B:ILE79 4.7 83.0 1.0 HE2 B:PHE138 4.8 39.7 1.0 HG3 B:MET130 4.8 85.2 1.0 CE2 B:PHE138 5.0 31.6 1.0

L.S.O.Silva, P.M.Matias, C.V.Romao, L.M.Saraiva. Escherichia Coli Ytfe Front Microbiol 2021.
ISSN: ESSN 1664-302X
DOI: 10.3389/FMICB.2021.670681