Iron in PDB 7bkb: Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)

Enzymatic activity of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)

All present enzymatic activity of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure):
1.17.1.9; 1.2.7.12; 1.2.99.5;

Other elements in 7bkb:

The structure of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) also contains other interesting chemical elements:

Zinc (Zn) 4 atoms
Molybdenum (Mo) 2 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 212;

Binding sites:

The binding sites of Iron atom in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) (pdb code 7bkb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 212 binding sites of Iron where determined in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure), PDB code: 7bkb:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 1 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:28.2
occ:1.00
FE1 A:SF4701 0.0 28.2 1.0
SG A:CYS420 2.2 25.6 1.0
S3 A:SF4701 2.3 28.2 1.0
S2 A:SF4701 2.3 28.2 1.0
S4 A:SF4701 2.3 28.2 1.0
FE4 A:SF4701 2.7 28.2 1.0
FE3 A:SF4701 2.7 28.2 1.0
FE2 A:SF4701 2.7 28.2 1.0
CB A:CYS420 3.0 25.6 1.0
CA A:CYS420 3.7 25.6 1.0
N A:CYS420 3.8 25.6 1.0
S1 A:SF4701 3.9 28.2 1.0
N A:CYS421 3.9 23.2 1.0
C A:CYS420 4.0 25.6 1.0
N A:SER417 4.3 23.8 1.0
SG A:CYS416 4.5 24.1 1.0
N A:ARG418 4.5 27.4 1.0
CB A:SER417 4.6 23.8 1.0
CA A:SER417 4.7 23.8 1.0
C A:SER417 4.7 23.8 1.0
N A:CYS402 4.8 24.4 1.0
SG A:CYS421 4.8 23.2 1.0
O A:CYS420 4.9 25.6 1.0
CA A:CYS402 4.9 24.4 1.0
SG A:CYS402 4.9 24.4 1.0
CA A:CYS421 5.0 23.2 1.0

Iron binding site 2 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 2 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:28.2
occ:1.00
FE2 A:SF4701 0.0 28.2 1.0
SG A:CYS402 2.2 24.4 1.0
S4 A:SF4701 2.3 28.2 1.0
S1 A:SF4701 2.3 28.2 1.0
S3 A:SF4701 2.3 28.2 1.0
FE3 A:SF4701 2.7 28.2 1.0
FE4 A:SF4701 2.7 28.2 1.0
FE1 A:SF4701 2.7 28.2 1.0
CB A:CYS402 3.4 24.4 1.0
CA A:CYS402 3.4 24.4 1.0
N A:CYS402 3.6 24.4 1.0
S2 A:SF4701 3.9 28.2 1.0
CD A:ARG406 4.1 28.3 1.0
SG A:CYS421 4.5 23.2 1.0
C A:LEU401 4.6 22.1 1.0
NH1 A:ARG406 4.7 28.3 1.0
SG A:CYS420 4.7 25.6 1.0
C A:CYS402 4.8 24.4 1.0
CG A:ARG406 4.9 28.3 1.0
CB A:SER405 4.9 25.3 1.0
SG A:CYS416 4.9 24.1 1.0

Iron binding site 3 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 3 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:28.2
occ:1.00
FE3 A:SF4701 0.0 28.2 1.0
SG A:CYS421 2.2 23.2 1.0
S2 A:SF4701 2.3 28.2 1.0
S1 A:SF4701 2.3 28.2 1.0
S4 A:SF4701 2.3 28.2 1.0
FE2 A:SF4701 2.7 28.2 1.0
FE1 A:SF4701 2.7 28.2 1.0
FE4 A:SF4701 2.8 28.2 1.0
CB A:CYS421 3.3 23.2 1.0
N A:CYS421 3.5 23.2 1.0
CA A:CYS421 3.7 23.2 1.0
S3 A:SF4701 3.9 28.2 1.0
C A:CYS420 4.3 25.6 1.0
CB A:ARG448 4.5 27.0 1.0
O A:ASP446 4.5 27.4 1.0
SG A:CYS402 4.6 24.4 1.0
SG A:CYS416 4.6 24.1 1.0
SG A:CYS420 4.7 25.6 1.0
CD A:ARG448 4.7 27.0 1.0
CA A:CYS420 4.8 25.6 1.0
CD2 A:LEU401 4.9 22.1 1.0
CB A:CYS420 4.9 25.6 1.0
CG A:ARG448 4.9 27.0 1.0
N A:CYS420 4.9 25.6 1.0
N A:ARG448 4.9 27.0 1.0

Iron binding site 4 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 4 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:28.2
occ:1.00
FE4 A:SF4701 0.0 28.2 1.0
SG A:CYS416 2.2 24.1 1.0
S3 A:SF4701 2.2 28.2 1.0
S1 A:SF4701 2.3 28.2 1.0
S2 A:SF4701 2.3 28.2 1.0
FE1 A:SF4701 2.7 28.2 1.0
FE2 A:SF4701 2.7 28.2 1.0
FE3 A:SF4701 2.8 28.2 1.0
CB A:CYS416 3.4 24.1 1.0
CA A:CYS416 3.8 24.1 1.0
S4 A:SF4701 3.9 28.2 1.0
N A:SER417 3.9 23.8 1.0
N A:ARG418 4.2 27.4 1.0
CD A:ARG406 4.2 28.3 1.0
CD A:ARG448 4.2 27.0 1.0
NH2 A:ARG448 4.2 27.0 1.0
C A:CYS416 4.2 24.1 1.0
SG A:CYS420 4.5 25.6 1.0
SG A:CYS402 4.6 24.4 1.0
CG A:ARG406 4.8 28.3 1.0
SG A:CYS421 4.8 23.2 1.0
CA A:ARG418 4.9 27.4 1.0
NE A:ARG448 4.9 27.0 1.0
C A:SER417 4.9 23.8 1.0
CA A:SER417 4.9 23.8 1.0
CZ A:ARG448 5.0 27.0 1.0

Iron binding site 5 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 5 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:45.4
occ:1.00
FE1 A:SF4703 0.0 45.4 1.0
S3 A:SF4703 2.3 45.4 1.0
S4 A:SF4703 2.3 45.4 1.0
S2 A:SF4703 2.3 45.4 1.0
SG A:CYS74 2.3 34.5 1.0
FE4 A:SF4703 2.7 45.4 1.0
FE2 A:SF4703 2.7 45.4 1.0
FE3 A:SF4703 2.7 45.4 1.0
CB A:CYS74 3.0 34.5 1.0
N A:CYS74 3.6 34.5 1.0
NH1 A:ARG103 3.6 34.9 1.0
S1 A:SF4703 3.9 45.4 1.0
CA A:CYS74 3.9 34.5 1.0
CD2 A:HIS79 4.2 44.9 1.0
CB A:ALA73 4.3 28.3 1.0
CZ A:ARG103 4.5 34.9 1.0
SG A:CYS16 4.6 39.5 1.0
C A:ALA73 4.7 28.3 1.0
SG A:CYS49 4.8 44.6 1.0
NE2 A:HIS79 4.9 44.9 1.0
SG A:CYS14 5.0 33.4 1.0
CD A:ARG103 5.0 34.9 1.0
CA A:ALA73 5.0 28.3 1.0

Iron binding site 6 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 6 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:45.4
occ:1.00
FE2 A:SF4703 0.0 45.4 1.0
SG A:CYS14 2.3 33.4 1.0
S3 A:SF4703 2.3 45.4 1.0
S1 A:SF4703 2.3 45.4 1.0
S4 A:SF4703 2.3 45.4 1.0
FE4 A:SF4703 2.7 45.4 1.0
FE1 A:SF4703 2.7 45.4 1.0
FE3 A:SF4703 2.7 45.4 1.0
CB A:CYS14 3.1 33.4 1.0
S2 A:SF4703 3.9 45.4 1.0
CB A:ALA73 4.1 28.3 1.0
N A:MET48 4.1 40.8 1.0
CA A:CYS16 4.2 39.5 1.0
CB A:CYS16 4.2 39.5 1.0
N A:CYS16 4.3 39.5 1.0
CA A:CYS14 4.5 33.4 1.0
CB A:MET48 4.5 40.8 1.0
N A:CYS49 4.6 44.6 1.0
SG A:CYS16 4.6 39.5 1.0
SG A:CYS49 4.7 44.6 1.0
CA A:MET48 4.8 40.8 1.0
SG A:CYS74 4.8 34.5 1.0
N A:CYS74 4.8 34.5 1.0
CA A:ALA73 4.9 28.3 1.0
CA A:TYR47 4.9 44.9 1.0
C A:TYR47 4.9 44.9 1.0

Iron binding site 7 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 7 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:45.4
occ:1.00
FE3 A:SF4703 0.0 45.4 1.0
S1 A:SF4703 2.3 45.4 1.0
S2 A:SF4703 2.3 45.4 1.0
S4 A:SF4703 2.3 45.4 1.0
SG A:CYS16 2.3 39.5 1.0
FE4 A:SF4703 2.7 45.4 1.0
FE2 A:SF4703 2.7 45.4 1.0
FE1 A:SF4703 2.7 45.4 1.0
CB A:CYS16 3.0 39.5 1.0
CA A:CYS16 3.4 39.5 1.0
NH1 A:ARG103 3.5 34.9 1.0
S3 A:SF4703 3.9 45.4 1.0
SG A:CYS14 4.2 33.4 1.0
N A:CYS16 4.4 39.5 1.0
C A:CYS16 4.4 39.5 1.0
O A:CYS16 4.6 39.5 1.0
CD A:ARG103 4.6 34.9 1.0
CZ A:ARG103 4.7 34.9 1.0
SG A:CYS49 4.8 44.6 1.0
SG A:CYS74 4.9 34.5 1.0
CB A:CYS74 5.0 34.5 1.0

Iron binding site 8 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 8 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe703

b:45.4
occ:1.00
FE4 A:SF4703 0.0 45.4 1.0
S1 A:SF4703 2.3 45.4 1.0
S2 A:SF4703 2.3 45.4 1.0
SG A:CYS49 2.3 44.6 1.0
S3 A:SF4703 2.3 45.4 1.0
FE1 A:SF4703 2.7 45.4 1.0
FE2 A:SF4703 2.7 45.4 1.0
FE3 A:SF4703 2.7 45.4 1.0
CB A:CYS49 3.1 44.6 1.0
S4 A:SF4703 3.9 45.4 1.0
N A:CYS49 3.9 44.6 1.0
CA A:CYS49 4.1 44.6 1.0
SG A:CYS14 4.5 33.4 1.0
CD2 A:HIS79 4.6 44.9 1.0
NE2 A:HIS79 4.6 44.9 1.0
SG A:CYS74 4.6 34.5 1.0
N A:MET48 4.8 40.8 1.0
C A:MET48 5.0 40.8 1.0

Iron binding site 9 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 9 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe704

b:28.1
occ:1.00
FE1 A:SF4704 0.0 28.1 1.0
SG A:CYS610 2.2 17.0 1.0
S4 A:SF4704 2.3 28.1 1.0
S3 A:SF4704 2.3 28.1 1.0
S2 A:SF4704 2.3 28.1 1.0
FE3 A:SF4704 2.7 28.1 1.0
FE4 A:SF4704 2.7 28.1 1.0
FE2 A:SF4704 2.7 28.1 1.0
CB A:CYS610 3.1 17.0 1.0
CA A:CYS610 3.8 17.0 1.0
S1 A:SF4704 3.9 28.1 1.0
CB A:ALA614 4.2 18.8 1.0
CD A:PRO611 4.6 17.9 1.0
CG A:LEU615 4.6 19.7 1.0
C A:CYS610 4.7 17.0 1.0
SG A:CYS639 4.8 14.8 1.0
SG A:CYS633 4.8 23.7 1.0
CD2 A:TYR612 4.8 19.6 1.0
SG A:CYS636 4.8 19.1 1.0
N A:ALA614 4.9 18.8 1.0
N A:PRO611 4.9 17.9 1.0
N A:CYS610 4.9 17.0 1.0
CA A:CYS633 5.0 23.7 1.0

Iron binding site 10 out of 212 in 7bkb

Go back to Iron Binding Sites List in 7bkb
Iron binding site 10 out of 212 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Hexameric, Composite Structure) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe704

b:28.1
occ:1.00
FE2 A:SF4704 0.0 28.1 1.0
SG A:CYS639 2.3 14.8 1.0
S1 A:SF4704 2.3 28.1 1.0
S4 A:SF4704 2.3 28.1 1.0
S3 A:SF4704 2.3 28.1 1.0
FE4 A:SF4704 2.7 28.1 1.0
FE3 A:SF4704 2.7 28.1 1.0
FE1 A:SF4704 2.7 28.1 1.0
CB A:CYS639 3.4 14.8 1.0
S2 A:SF4704 3.9 28.1 1.0
N A:CYS639 3.9 14.8 1.0
CB A:ALA593 4.2 28.1 1.0
CA A:CYS639 4.3 14.8 1.0
SG A:CYS636 4.5 19.1 1.0
SG A:CYS633 4.6 23.7 1.0
CD1 A:LEU615 4.6 19.7 1.0
N A:THR638 4.7 13.3 1.0
N A:GLY637 4.8 13.3 1.0
SG A:CYS610 4.8 17.0 1.0
CD2 A:LEU615 4.8 19.7 1.0
CG A:LEU615 4.8 19.7 1.0
N A:GLY640 5.0 13.2 1.0

Reference:

T.Watanabe, O.Pfeil-Gardiner, J.Kahnt, J.Koch, S.Shima, B.J.Murphy. Three-Megadalton Complex of Methanogenic Electron-Bifurcating and Co 2 -Fixing Enzymes. Science V. 373 1151 2021.
ISSN: ESSN 1095-9203
PubMed: 34516836
DOI: 10.1126/SCIENCE.ABG5550
Page generated: Fri Nov 5 13:35:48 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy