Iron in PDB 7bkd: Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)

All present enzymatic activity of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure):
1.17.1.9;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90;

Binding sites:

The binding sites of Iron atom in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) (pdb code 7bkd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 90 binding sites of Iron where determined in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure), PDB code: 7bkd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe701 b:38.2 occ:1.00 FE1 A:SF4701 0.0 38.2 1.0 SG A:CYS420 2.2 33.3 1.0 S4 A:SF4701 2.3 38.2 1.0 S2 A:SF4701 2.3 38.2 1.0 S3 A:SF4701 2.3 38.2 1.0 FE4 A:SF4701 2.7 38.2 1.0 FE2 A:SF4701 2.7 38.2 1.0 FE3 A:SF4701 2.8 38.2 1.0 CB A:CYS420 3.0 33.3 1.0 CA A:CYS420 3.7 33.3 1.0 N A:CYS420 3.8 33.3 1.0 S1 A:SF4701 3.9 38.2 1.0 N A:CYS421 3.9 28.6 1.0 C A:CYS420 4.1 33.3 1.0 N A:SER417 4.2 28.6 1.0 N A:ARG418 4.5 31.7 1.0 CB A:SER417 4.5 28.6 1.0 SG A:CYS416 4.6 29.2 1.0 CA A:SER417 4.6 28.6 1.0 N A:CYS402 4.6 29.3 1.0 C A:SER417 4.7 28.6 1.0 CA A:CYS402 4.8 29.3 1.0 SG A:CYS421 4.9 28.6 1.0 SG A:CYS402 4.9 29.3 1.0

Iron binding site 2 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe701 b:38.2 occ:1.00 FE2 A:SF4701 0.0 38.2 1.0 S4 A:SF4701 2.3 38.2 1.0 S3 A:SF4701 2.3 38.2 1.0 SG A:CYS402 2.3 29.3 1.0 S1 A:SF4701 2.3 38.2 1.0 FE3 A:SF4701 2.7 38.2 1.0 FE1 A:SF4701 2.7 38.2 1.0 FE4 A:SF4701 2.7 38.2 1.0 CB A:CYS402 3.4 29.3 1.0 CA A:CYS402 3.4 29.3 1.0 N A:CYS402 3.6 29.3 1.0 S2 A:SF4701 3.9 38.2 1.0 CD A:ARG406 4.3 29.4 1.0 C A:LEU401 4.6 26.3 1.0 SG A:CYS421 4.6 28.6 1.0 NH1 A:ARG406 4.9 29.4 1.0 SG A:CYS420 4.9 33.3 1.0 C A:CYS402 4.9 29.3 1.0 SG A:CYS416 4.9 29.2 1.0 CB A:SER405 4.9 29.1 1.0 CB A:LEU401 5.0 26.3 1.0

Iron binding site 3 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe701 b:38.2 occ:1.00 FE3 A:SF4701 0.0 38.2 1.0 SG A:CYS421 2.3 28.6 1.0 S4 A:SF4701 2.3 38.2 1.0 S1 A:SF4701 2.3 38.2 1.0 S2 A:SF4701 2.3 38.2 1.0 FE2 A:SF4701 2.7 38.2 1.0 FE1 A:SF4701 2.8 38.2 1.0 FE4 A:SF4701 2.8 38.2 1.0 CB A:CYS421 3.3 28.6 1.0 N A:CYS421 3.4 28.6 1.0 CA A:CYS421 3.7 28.6 1.0 S3 A:SF4701 3.9 38.2 1.0 C A:CYS420 4.3 33.3 1.0 CB A:ARG448 4.4 26.5 1.0 O A:ASP446 4.6 37.2 1.0 SG A:CYS402 4.6 29.3 1.0 SG A:CYS420 4.7 33.3 1.0 SG A:CYS416 4.8 29.2 1.0 CB A:CYS420 4.8 33.3 1.0 CG A:ARG448 4.8 26.5 1.0 CA A:CYS420 4.8 33.3 1.0 CD2 A:LEU401 4.8 26.3 1.0 CD A:ARG448 4.8 26.5 1.0 N A:CYS420 4.8 33.3 1.0 N A:ARG448 4.9 26.5 1.0

Iron binding site 4 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe701 b:38.2 occ:1.00 FE4 A:SF4701 0.0 38.2 1.0 SG A:CYS416 2.3 29.2 1.0 S3 A:SF4701 2.3 38.2 1.0 S2 A:SF4701 2.3 38.2 1.0 S1 A:SF4701 2.3 38.2 1.0 FE1 A:SF4701 2.7 38.2 1.0 FE2 A:SF4701 2.7 38.2 1.0 FE3 A:SF4701 2.8 38.2 1.0 CB A:CYS416 3.5 29.2 1.0 N A:SER417 3.8 28.6 1.0 S4 A:SF4701 3.9 38.2 1.0 CA A:CYS416 4.0 29.2 1.0 N A:ARG418 4.0 31.7 1.0 NH2 A:ARG448 4.1 26.5 1.0 CD A:ARG448 4.2 26.5 1.0 C A:CYS416 4.3 29.2 1.0 CD A:ARG406 4.6 29.4 1.0 SG A:CYS420 4.6 33.3 1.0 SG A:CYS402 4.7 29.3 1.0 CA A:ARG418 4.8 31.7 1.0 C A:SER417 4.8 28.6 1.0 SG A:CYS421 4.8 28.6 1.0 CA A:SER417 4.8 28.6 1.0 CZ A:ARG448 5.0 26.5 1.0

Iron binding site 5 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe703 b:21.9 occ:1.00 FE1 A:SF4703 0.0 21.9 1.0 S4 A:SF4703 2.3 21.9 1.0 SG A:CYS74 2.3 17.1 1.0 S3 A:SF4703 2.3 21.9 1.0 S2 A:SF4703 2.3 21.9 1.0 FE2 A:SF4703 2.7 21.9 1.0 FE3 A:SF4703 2.7 21.9 1.0 FE4 A:SF4703 2.7 21.9 1.0 CB A:CYS74 3.3 17.1 1.0 N A:CYS74 3.7 17.1 1.0 S1 A:SF4703 3.9 21.9 1.0 ND1 A:HIS79 4.1 24.5 1.0 CA A:CYS74 4.1 17.1 1.0 CB A:ALA73 4.3 13.8 1.0 SG A:CYS16 4.7 19.8 1.0 NH1 A:ARG103 4.7 16.7 1.0 CE1 A:HIS79 4.7 24.5 1.0 CB A:CYS49 4.7 26.0 1.0 C A:ALA73 4.8 13.8 1.0 SG A:CYS14 4.9 19.2 1.0 SG A:CYS49 4.9 26.0 1.0 CA A:ALA73 4.9 13.8 1.0 CZ A:ARG103 5.0 16.7 1.0

Iron binding site 6 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe703 b:21.9 occ:1.00 FE2 A:SF4703 0.0 21.9 1.0 SG A:CYS14 2.3 19.2 1.0 S3 A:SF4703 2.3 21.9 1.0 S4 A:SF4703 2.3 21.9 1.0 S1 A:SF4703 2.3 21.9 1.0 FE1 A:SF4703 2.7 21.9 1.0 FE4 A:SF4703 2.7 21.9 1.0 FE3 A:SF4703 2.7 21.9 1.0 CB A:CYS14 3.2 19.2 1.0 S2 A:SF4703 3.9 21.9 1.0 CB A:ALA73 4.1 13.8 1.0 N A:MET48 4.2 25.4 1.0 N A:CYS49 4.4 26.0 1.0 CB A:CYS16 4.4 19.8 1.0 SG A:CYS16 4.5 19.8 1.0 CA A:CYS16 4.5 19.8 1.0 CA A:CYS14 4.6 19.2 1.0 N A:CYS16 4.6 19.8 1.0 SG A:CYS49 4.8 26.0 1.0 SG A:CYS74 4.8 17.1 1.0 CB A:CYS49 4.8 26.0 1.0 CA A:MET48 4.9 25.4 1.0 CB A:MET48 4.9 25.4 1.0 C A:MET48 4.9 25.4 1.0 O A:GLN46 4.9 27.8 1.0 CA A:ALA73 4.9 13.8 1.0 CA A:TYR47 5.0 26.9 1.0 N A:CYS74 5.0 17.1 1.0

Iron binding site 7 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe703 b:21.9 occ:1.00 FE3 A:SF4703 0.0 21.9 1.0 S4 A:SF4703 2.3 21.9 1.0 S2 A:SF4703 2.3 21.9 1.0 S1 A:SF4703 2.3 21.9 1.0 SG A:CYS16 2.3 19.8 1.0 FE1 A:SF4703 2.7 21.9 1.0 FE2 A:SF4703 2.7 21.9 1.0 FE4 A:SF4703 2.7 21.9 1.0 CB A:CYS16 3.3 19.8 1.0 CA A:CYS16 3.8 19.8 1.0 S3 A:SF4703 3.9 21.9 1.0 ND2 a:ASN262 4.0 33.9 1.0 SG A:CYS14 4.1 19.2 1.0 NH1 A:ARG103 4.1 16.7 1.0 SG A:CYS49 4.6 26.0 1.0 N A:CYS16 4.8 19.8 1.0 SG A:CYS74 4.8 17.1 1.0 CG a:ASN262 4.8 33.9 1.0 C A:CYS16 4.9 19.8 1.0 CD A:ARG103 4.9 16.7 1.0 CZ A:ARG103 4.9 16.7 1.0 CB a:ASN262 5.0 33.9 1.0 O A:CYS16 5.0 19.8 1.0

Iron binding site 8 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe703 b:21.9 occ:1.00 FE4 A:SF4703 0.0 21.9 1.0 S1 A:SF4703 2.3 21.9 1.0 S3 A:SF4703 2.3 21.9 1.0 S2 A:SF4703 2.3 21.9 1.0 SG A:CYS49 2.3 26.0 1.0 CB A:CYS49 2.7 26.0 1.0 FE2 A:SF4703 2.7 21.9 1.0 FE3 A:SF4703 2.7 21.9 1.0 FE1 A:SF4703 2.7 21.9 1.0 N A:CYS49 3.5 26.0 1.0 CA A:CYS49 3.7 26.0 1.0 S4 A:SF4703 3.9 21.9 1.0 CE1 A:HIS79 4.4 24.5 1.0 ND1 A:HIS79 4.4 24.5 1.0 C A:MET48 4.6 25.4 1.0 SG A:CYS14 4.6 19.2 1.0 N A:MET48 4.7 25.4 1.0 CB a:ASN262 4.7 33.9 1.0 SG A:CYS74 4.7 17.1 1.0 ND2 a:ASN262 4.7 33.9 1.0 C A:CYS49 4.8 26.0 1.0 SG A:CYS16 5.0 19.8 1.0

Iron binding site 9 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe704 b:28.5 occ:1.00 FE1 A:SF4704 0.0 28.5 1.0 SG A:CYS610 2.3 9.2 1.0 S3 A:SF4704 2.3 28.5 1.0 S2 A:SF4704 2.3 28.5 1.0 S4 A:SF4704 2.3 28.5 1.0 FE4 A:SF4704 2.7 28.5 1.0 FE2 A:SF4704 2.7 28.5 1.0 FE3 A:SF4704 2.7 28.5 1.0 CB A:CYS610 2.9 9.2 1.0 S1 A:SF4704 3.9 28.5 1.0 CA A:CYS610 3.9 9.2 1.0 CB A:ALA614 4.1 8.5 1.0 CG A:LEU615 4.4 8.1 1.0 CD1 A:LEU615 4.6 8.1 1.0 SG A:CYS639 4.7 9.6 1.0 CD A:PRO611 4.7 9.2 1.0 C A:CYS610 4.8 9.2 1.0 SG A:CYS636 4.8 13.1 1.0 SG A:CYS633 4.9 14.5 1.0 CD2 A:LEU615 4.9 8.1 1.0 CA A:CYS633 4.9 14.5 1.0 N A:ALA614 4.9 8.5 1.0

Iron binding site 10 out of 90 in the Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Formate Dehydrogenase - Heterodisulfide Reductase - Formylmethanofuran Dehydrogenase Complex From Methanospirillum Hungatei (Heterodislfide Reductase Core and Mobile Arm in Conformational State 1, Composite Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe704 b:28.5 occ:1.00 FE2 A:SF4704 0.0 28.5 1.0 S4 A:SF4704 2.3 28.5 1.0 S1 A:SF4704 2.3 28.5 1.0 SG A:CYS639 2.3 9.6 1.0 S3 A:SF4704 2.3 28.5 1.0 FE3 A:SF4704 2.7 28.5 1.0 FE4 A:SF4704 2.7 28.5 1.0 FE1 A:SF4704 2.7 28.5 1.0 CB A:CYS639 3.5 9.6 1.0 S2 A:SF4704 3.9 28.5 1.0 N A:CYS639 3.9 9.6 1.0 CA A:CYS639 4.3 9.6 1.0 CB A:ALA593 4.4 10.3 1.0 SG A:CYS636 4.4 13.1 1.0 CD1 A:LEU615 4.5 8.1 1.0 SG A:CYS633 4.5 14.5 1.0 N A:THR638 4.6 8.4 1.0 N A:GLY637 4.7 9.1 1.0 CE A:MET650 4.7 9.1 1.0 CD2 A:LEU615 4.8 8.1 1.0 CG A:LEU615 4.8 8.1 1.0 SG A:CYS610 4.9 9.2 1.0 CB A:CYS610 5.0 9.2 1.0 SD A:MET650 5.0 9.1 1.0

T.Watanabe, O.Pfeil-Gardiner, J.Kahnt, J.Koch, S.Shima, B.J.Murphy. Three-Megadalton Complex of Methanogenic Electron-Bifurcating and Co 2 -Fixing Enzymes. Science V. 373 1151 2021.
ISSN: ESSN 1095-9203
PubMed: 34516836
DOI: 10.1126/SCIENCE.ABG5550