Iron in PDB 7c73: Crystal Structure of Yak Lactoperoxidase Using Data Obtained From Crystals Soaked in MGCL2 at 2.70 A Resolution

Protein crystallography data

The structure of Crystal Structure of Yak Lactoperoxidase Using Data Obtained From Crystals Soaked in MGCL2 at 2.70 A Resolution, PDB code: 7c73 was solved by P.K.Singh, S.N.Pandey, C.Rani, N.Ahmad, V.Viswanathan, P.Sharma, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.58 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.880, 79.930, 75.050, 90.00, 101.35, 90.00
R / Rfree (%) 21.8 / 30.6

Other elements in 7c73:

The structure of Crystal Structure of Yak Lactoperoxidase Using Data Obtained From Crystals Soaked in MGCL2 at 2.70 A Resolution also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Yak Lactoperoxidase Using Data Obtained From Crystals Soaked in MGCL2 at 2.70 A Resolution (pdb code 7c73). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Yak Lactoperoxidase Using Data Obtained From Crystals Soaked in MGCL2 at 2.70 A Resolution, PDB code: 7c73:

Iron binding site 1 out of 1 in 7c73

Go back to Iron Binding Sites List in 7c73
Iron binding site 1 out of 1 in the Crystal Structure of Yak Lactoperoxidase Using Data Obtained From Crystals Soaked in MGCL2 at 2.70 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Yak Lactoperoxidase Using Data Obtained From Crystals Soaked in MGCL2 at 2.70 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:26.0
occ:1.00
FE A:HEM601 0.0 26.0 1.0
ND A:HEM601 1.9 25.9 1.0
NA A:HEM601 2.0 26.4 1.0
NE2 A:HIS351 2.1 20.1 1.0
NC A:HEM601 2.1 25.6 1.0
NB A:HEM601 2.1 27.1 1.0
O A:HOH745 2.7 25.7 1.0
C4D A:HEM601 2.8 26.2 1.0
C1D A:HEM601 2.9 25.3 1.0
C1A A:HEM601 3.0 26.1 1.0
C4A A:HEM601 3.0 26.8 1.0
C4C A:HEM601 3.0 25.1 1.0
CD2 A:HIS351 3.0 19.4 1.0
CE1 A:HIS351 3.1 19.8 1.0
C1B A:HEM601 3.1 27.0 1.0
C4B A:HEM601 3.1 26.6 1.0
C1C A:HEM601 3.1 25.4 1.0
CHA A:HEM601 3.3 26.4 1.0
CHD A:HEM601 3.4 25.3 1.0
CHB A:HEM601 3.5 27.1 1.0
CHC A:HEM601 3.5 25.8 1.0
C3D A:HEM601 4.1 25.3 1.0
C2D A:HEM601 4.1 24.6 1.0
ND1 A:HIS351 4.2 19.4 1.0
C2A A:HEM601 4.2 25.3 1.0
CG A:HIS351 4.2 19.4 1.0
C3A A:HEM601 4.2 26.0 1.0
C3C A:HEM601 4.3 24.6 1.0
C2C A:HEM601 4.3 25.1 1.0
C2B A:HEM601 4.3 26.5 1.0
C3B A:HEM601 4.4 26.3 1.0
NE2 A:GLN105 4.4 18.3 1.0
CD2 A:LEU433 4.8 18.2 1.0

Reference:

P.K.Singh, S.N.Pandey, C.Rani, N.Ahmad, V.Viswanathan, P.Sharma, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of Yak Lactoperoxidase Using Data Obtained From Crystals Soaked in MGCL2 at 2.70 A Resolution To Be Published.
Page generated: Sun Dec 13 18:37:21 2020

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