Iron in PDB 7cat: The Nadph Binding Site on Beef Liver Catalase
Enzymatic activity of The Nadph Binding Site on Beef Liver Catalase
All present enzymatic activity of The Nadph Binding Site on Beef Liver Catalase:
1.11.1.6;
Protein crystallography data
The structure of The Nadph Binding Site on Beef Liver Catalase, PDB code: 7cat
was solved by
M.R.N.Murthy,
T.J.Reid Iii,
A.Sicignano,
N.Tanaka,
I.Fita,
M.G.Rossmann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.50 /
2.50
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
142.000,
142.000,
103.700,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
21.2 /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the The Nadph Binding Site on Beef Liver Catalase
(pdb code 7cat). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
The Nadph Binding Site on Beef Liver Catalase, PDB code: 7cat:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 7cat
Go back to
Iron Binding Sites List in 7cat
Iron binding site 1 out
of 2 in the The Nadph Binding Site on Beef Liver Catalase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Nadph Binding Site on Beef Liver Catalase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe507
b:22.1
occ:1.00
|
FE
|
A:HEM507
|
0.0
|
22.1
|
1.0
|
OH
|
A:TYR357
|
1.8
|
9.4
|
1.0
|
NA
|
A:HEM507
|
2.0
|
19.6
|
1.0
|
ND
|
A:HEM507
|
2.0
|
20.4
|
1.0
|
NC
|
A:HEM507
|
2.0
|
22.7
|
1.0
|
NB
|
A:HEM507
|
2.0
|
20.0
|
1.0
|
CZ
|
A:TYR357
|
3.0
|
9.0
|
1.0
|
C1A
|
A:HEM507
|
3.0
|
19.9
|
1.0
|
C4B
|
A:HEM507
|
3.0
|
19.8
|
1.0
|
C1B
|
A:HEM507
|
3.0
|
19.5
|
1.0
|
C4D
|
A:HEM507
|
3.0
|
20.3
|
1.0
|
C4C
|
A:HEM507
|
3.0
|
25.0
|
1.0
|
C4A
|
A:HEM507
|
3.0
|
19.3
|
1.0
|
C1D
|
A:HEM507
|
3.0
|
20.0
|
1.0
|
C1C
|
A:HEM507
|
3.1
|
23.4
|
1.0
|
CHC
|
A:HEM507
|
3.4
|
21.8
|
1.0
|
CHD
|
A:HEM507
|
3.4
|
22.1
|
1.0
|
CHB
|
A:HEM507
|
3.4
|
19.2
|
1.0
|
CHA
|
A:HEM507
|
3.4
|
19.5
|
1.0
|
CE2
|
A:TYR357
|
3.8
|
9.4
|
1.0
|
CE1
|
A:TYR357
|
3.8
|
9.2
|
1.0
|
NH2
|
A:ARG353
|
4.0
|
17.9
|
1.0
|
C3B
|
A:HEM507
|
4.2
|
18.9
|
1.0
|
C2B
|
A:HEM507
|
4.2
|
18.4
|
1.0
|
C2A
|
A:HEM507
|
4.2
|
18.8
|
1.0
|
C3D
|
A:HEM507
|
4.3
|
19.1
|
1.0
|
C3A
|
A:HEM507
|
4.3
|
19.3
|
1.0
|
C3C
|
A:HEM507
|
4.3
|
24.9
|
1.0
|
C2C
|
A:HEM507
|
4.3
|
23.6
|
1.0
|
C2D
|
A:HEM507
|
4.3
|
19.6
|
1.0
|
NE
|
A:ARG353
|
4.4
|
16.8
|
1.0
|
CZ
|
A:PHE160
|
4.5
|
9.1
|
1.0
|
CZ
|
A:ARG353
|
4.7
|
16.7
|
1.0
|
CD2
|
A:HIS74
|
4.8
|
17.8
|
1.0
|
NE2
|
A:HIS74
|
4.8
|
18.3
|
1.0
|
CG2
|
A:VAL73
|
4.8
|
11.3
|
1.0
|
|
Iron binding site 2 out
of 2 in 7cat
Go back to
Iron Binding Sites List in 7cat
Iron binding site 2 out
of 2 in the The Nadph Binding Site on Beef Liver Catalase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Nadph Binding Site on Beef Liver Catalase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe507
b:22.1
occ:1.00
|
FE
|
B:HEM507
|
0.0
|
22.1
|
1.0
|
OH
|
B:TYR357
|
1.8
|
9.4
|
1.0
|
NA
|
B:HEM507
|
2.0
|
19.6
|
1.0
|
ND
|
B:HEM507
|
2.0
|
20.4
|
1.0
|
NC
|
B:HEM507
|
2.0
|
22.7
|
1.0
|
NB
|
B:HEM507
|
2.0
|
20.0
|
1.0
|
CZ
|
B:TYR357
|
3.0
|
9.0
|
1.0
|
C1A
|
B:HEM507
|
3.0
|
19.9
|
1.0
|
C4B
|
B:HEM507
|
3.0
|
19.8
|
1.0
|
C1B
|
B:HEM507
|
3.0
|
19.5
|
1.0
|
C4D
|
B:HEM507
|
3.0
|
20.3
|
1.0
|
C4C
|
B:HEM507
|
3.0
|
25.0
|
1.0
|
C4A
|
B:HEM507
|
3.0
|
19.3
|
1.0
|
C1D
|
B:HEM507
|
3.0
|
20.0
|
1.0
|
C1C
|
B:HEM507
|
3.1
|
23.4
|
1.0
|
CHC
|
B:HEM507
|
3.4
|
21.8
|
1.0
|
CHD
|
B:HEM507
|
3.4
|
22.1
|
1.0
|
CHB
|
B:HEM507
|
3.4
|
19.2
|
1.0
|
CHA
|
B:HEM507
|
3.4
|
19.5
|
1.0
|
CE2
|
B:TYR357
|
3.8
|
9.4
|
1.0
|
CE1
|
B:TYR357
|
3.8
|
9.2
|
1.0
|
NH2
|
B:ARG353
|
4.0
|
17.9
|
1.0
|
C3B
|
B:HEM507
|
4.2
|
18.9
|
1.0
|
C2B
|
B:HEM507
|
4.2
|
18.4
|
1.0
|
C2A
|
B:HEM507
|
4.2
|
18.8
|
1.0
|
C3D
|
B:HEM507
|
4.3
|
19.1
|
1.0
|
C3A
|
B:HEM507
|
4.3
|
19.3
|
1.0
|
C3C
|
B:HEM507
|
4.3
|
24.9
|
1.0
|
C2C
|
B:HEM507
|
4.3
|
23.6
|
1.0
|
C2D
|
B:HEM507
|
4.3
|
19.6
|
1.0
|
NE
|
B:ARG353
|
4.4
|
16.8
|
1.0
|
CZ
|
B:PHE160
|
4.5
|
9.1
|
1.0
|
CZ
|
B:ARG353
|
4.7
|
16.7
|
1.0
|
CD2
|
B:HIS74
|
4.8
|
17.8
|
1.0
|
NE2
|
B:HIS74
|
4.8
|
18.3
|
1.0
|
CG2
|
B:VAL73
|
4.8
|
11.3
|
1.0
|
|
Reference:
I.Fita,
M.G.Rossmann.
The Nadph Binding Site on Beef Liver Catalase. Proc.Natl.Acad.Sci.Usa V. 82 1604 1985.
ISSN: ISSN 0027-8424
PubMed: 3856839
DOI: 10.1073/PNAS.82.6.1604
Page generated: Sun Dec 13 18:39:24 2020
|