Iron in PDB 7cjj: Photosystem II Structure in the S2 State
Enzymatic activity of Photosystem II Structure in the S2 State
All present enzymatic activity of Photosystem II Structure in the S2 State:
1.10.3.9;
Protein crystallography data
The structure of Photosystem II Structure in the S2 State, PDB code: 7cjj
was solved by
H.Li,
J.-R.Shen,
M.Suga,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
39.90 /
2.40
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
125.75,
231.63,
288.4,
90,
90,
90
|
|
R / Rfree (%)
|
16.8 /
21.8
|
Other elements in 7cjj:
The structure of Photosystem II Structure in the S2 State also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Photosystem II Structure in the S2 State
(pdb code 7cjj). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Photosystem II Structure in the S2 State, PDB code: 7cjj:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 7cjj
Go back to
Iron Binding Sites List in 7cjj
Iron binding site 1 out
of 8 in the Photosystem II Structure in the S2 State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Photosystem II Structure in the S2 State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe401
b:54.5
occ:0.30
|
FE
|
A:FE2401
|
0.0
|
54.5
|
0.3
|
|
FE
|
A:FE2401
|
0.1
|
57.4
|
0.7
|
|
NE2
|
A:HIS215
|
2.1
|
48.9
|
0.3
|
|
O1
|
D:BCT401
|
2.1
|
57.6
|
0.3
|
|
NE2
|
D:HIS214
|
2.1
|
46.0
|
0.3
|
|
NE2
|
A:HIS215
|
2.1
|
49.5
|
0.7
|
|
NE2
|
D:HIS214
|
2.1
|
46.3
|
0.7
|
|
O2
|
D:BCT401
|
2.2
|
57.5
|
0.3
|
|
NE2
|
A:HIS272
|
2.3
|
51.5
|
0.3
|
|
NE2
|
D:HIS268
|
2.3
|
42.9
|
0.3
|
|
NE2
|
D:HIS268
|
2.3
|
42.5
|
0.7
|
|
O1
|
D:BCT401
|
2.4
|
59.5
|
0.7
|
|
C
|
D:BCT401
|
2.4
|
60.4
|
0.3
|
|
NE2
|
A:HIS272
|
2.4
|
51.8
|
0.7
|
|
O2
|
D:BCT401
|
2.5
|
59.0
|
0.7
|
|
C
|
D:BCT401
|
2.8
|
61.2
|
0.7
|
|
CE1
|
A:HIS215
|
2.8
|
46.0
|
0.3
|
|
CE1
|
A:HIS215
|
2.9
|
45.0
|
0.7
|
|
CE1
|
D:HIS214
|
3.0
|
43.9
|
0.3
|
|
CD2
|
D:HIS214
|
3.1
|
43.6
|
0.7
|
|
CD2
|
D:HIS214
|
3.1
|
43.6
|
0.3
|
|
CE1
|
D:HIS214
|
3.1
|
43.1
|
0.7
|
|
CD2
|
A:HIS215
|
3.2
|
44.2
|
0.7
|
|
CE1
|
A:HIS272
|
3.2
|
53.0
|
0.3
|
|
CD2
|
A:HIS215
|
3.2
|
45.1
|
0.3
|
|
CD2
|
D:HIS268
|
3.3
|
41.9
|
0.7
|
|
CE1
|
D:HIS268
|
3.3
|
42.9
|
0.3
|
|
CD2
|
D:HIS268
|
3.3
|
42.4
|
0.3
|
|
CD2
|
A:HIS272
|
3.3
|
51.5
|
0.3
|
|
CD2
|
A:HIS272
|
3.3
|
51.4
|
0.7
|
|
CE1
|
D:HIS268
|
3.3
|
42.0
|
0.7
|
|
CE1
|
A:HIS272
|
3.4
|
53.2
|
0.7
|
|
O3
|
D:BCT401
|
3.7
|
62.1
|
0.3
|
|
ND1
|
A:HIS215
|
4.0
|
46.5
|
0.3
|
|
ND1
|
A:HIS215
|
4.1
|
46.6
|
0.7
|
|
O3
|
D:BCT401
|
4.1
|
64.9
|
0.7
|
|
ND1
|
D:HIS214
|
4.1
|
43.8
|
0.3
|
|
ND1
|
D:HIS214
|
4.2
|
39.4
|
0.7
|
|
CG
|
D:HIS214
|
4.2
|
43.3
|
0.3
|
|
CG
|
D:HIS214
|
4.2
|
43.4
|
0.7
|
|
CG
|
A:HIS215
|
4.2
|
45.3
|
0.3
|
|
CG
|
A:HIS215
|
4.3
|
45.0
|
0.7
|
|
ND1
|
A:HIS272
|
4.4
|
53.0
|
0.3
|
|
ND1
|
D:HIS268
|
4.4
|
43.3
|
0.3
|
|
CG
|
A:HIS272
|
4.4
|
52.0
|
0.3
|
|
CG
|
D:HIS268
|
4.4
|
45.4
|
0.7
|
|
CG
|
D:HIS268
|
4.4
|
44.4
|
0.3
|
|
ND1
|
D:HIS268
|
4.4
|
43.8
|
0.7
|
|
CG
|
A:HIS272
|
4.5
|
52.5
|
0.7
|
|
ND1
|
A:HIS272
|
4.5
|
53.6
|
0.7
|
|
CG2
|
A:VAL219
|
4.7
|
53.6
|
1.0
|
|
CG2
|
D:VAL218
|
4.9
|
41.2
|
1.0
|
|
Iron binding site 2 out
of 8 in 7cjj
Go back to
Iron Binding Sites List in 7cjj
Iron binding site 2 out
of 8 in the Photosystem II Structure in the S2 State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Photosystem II Structure in the S2 State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe401
b:57.4
occ:0.70
|
FE
|
A:FE2401
|
0.0
|
57.4
|
0.7
|
|
FE
|
A:FE2401
|
0.1
|
54.5
|
0.3
|
|
NE2
|
D:HIS214
|
2.0
|
46.0
|
0.3
|
|
O1
|
D:BCT401
|
2.1
|
57.6
|
0.3
|
|
NE2
|
D:HIS214
|
2.1
|
46.3
|
0.7
|
|
O2
|
D:BCT401
|
2.1
|
57.5
|
0.3
|
|
NE2
|
A:HIS215
|
2.2
|
48.9
|
0.3
|
|
NE2
|
A:HIS215
|
2.2
|
49.5
|
0.7
|
|
NE2
|
A:HIS272
|
2.3
|
51.5
|
0.3
|
|
C
|
D:BCT401
|
2.3
|
60.4
|
0.3
|
|
NE2
|
D:HIS268
|
2.3
|
42.9
|
0.3
|
|
NE2
|
D:HIS268
|
2.4
|
42.5
|
0.7
|
|
O1
|
D:BCT401
|
2.4
|
59.5
|
0.7
|
|
NE2
|
A:HIS272
|
2.4
|
51.8
|
0.7
|
|
O2
|
D:BCT401
|
2.4
|
59.0
|
0.7
|
|
C
|
D:BCT401
|
2.7
|
61.2
|
0.7
|
|
CE1
|
A:HIS215
|
2.9
|
46.0
|
0.3
|
|
CE1
|
D:HIS214
|
2.9
|
43.9
|
0.3
|
|
CE1
|
A:HIS215
|
3.0
|
45.0
|
0.7
|
|
CE1
|
D:HIS214
|
3.1
|
43.1
|
0.7
|
|
CD2
|
D:HIS214
|
3.1
|
43.6
|
0.7
|
|
CD2
|
D:HIS214
|
3.1
|
43.6
|
0.3
|
|
CE1
|
A:HIS272
|
3.2
|
53.0
|
0.3
|
|
CE1
|
D:HIS268
|
3.3
|
42.9
|
0.3
|
|
CD2
|
A:HIS272
|
3.3
|
51.5
|
0.3
|
|
CD2
|
A:HIS215
|
3.3
|
44.2
|
0.7
|
|
CD2
|
A:HIS215
|
3.3
|
45.1
|
0.3
|
|
CD2
|
A:HIS272
|
3.3
|
51.4
|
0.7
|
|
CD2
|
D:HIS268
|
3.3
|
41.9
|
0.7
|
|
CE1
|
D:HIS268
|
3.3
|
42.0
|
0.7
|
|
CD2
|
D:HIS268
|
3.4
|
42.4
|
0.3
|
|
CE1
|
A:HIS272
|
3.4
|
53.2
|
0.7
|
|
O3
|
D:BCT401
|
3.7
|
62.1
|
0.3
|
|
O3
|
D:BCT401
|
4.1
|
64.9
|
0.7
|
|
ND1
|
D:HIS214
|
4.1
|
43.8
|
0.3
|
|
ND1
|
A:HIS215
|
4.1
|
46.5
|
0.3
|
|
ND1
|
D:HIS214
|
4.2
|
39.4
|
0.7
|
|
ND1
|
A:HIS215
|
4.2
|
46.6
|
0.7
|
|
CG
|
D:HIS214
|
4.2
|
43.4
|
0.7
|
|
CG
|
D:HIS214
|
4.2
|
43.3
|
0.3
|
|
ND1
|
A:HIS272
|
4.3
|
53.0
|
0.3
|
|
CG
|
A:HIS215
|
4.3
|
45.3
|
0.3
|
|
CG
|
A:HIS215
|
4.4
|
45.0
|
0.7
|
|
CG
|
A:HIS272
|
4.4
|
52.0
|
0.3
|
|
ND1
|
D:HIS268
|
4.4
|
43.3
|
0.3
|
|
ND1
|
D:HIS268
|
4.5
|
43.8
|
0.7
|
|
CG
|
D:HIS268
|
4.5
|
45.4
|
0.7
|
|
CG
|
A:HIS272
|
4.5
|
52.5
|
0.7
|
|
CG
|
D:HIS268
|
4.5
|
44.4
|
0.3
|
|
ND1
|
A:HIS272
|
4.5
|
53.6
|
0.7
|
|
CG2
|
A:VAL219
|
4.7
|
53.6
|
1.0
|
|
CG2
|
D:VAL218
|
4.8
|
41.2
|
1.0
|
|
OH
|
D:TYR244
|
4.9
|
52.3
|
1.0
|
|
Iron binding site 3 out
of 8 in 7cjj
Go back to
Iron Binding Sites List in 7cjj
Iron binding site 3 out
of 8 in the Photosystem II Structure in the S2 State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Photosystem II Structure in the S2 State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe102
b:72.7
occ:1.00
|
FE
|
E:HEM102
|
0.0
|
72.7
|
1.0
|
|
ND
|
E:HEM102
|
2.0
|
62.2
|
1.0
|
|
NA
|
E:HEM102
|
2.0
|
71.1
|
1.0
|
|
NC
|
E:HEM102
|
2.1
|
63.4
|
1.0
|
|
NE2
|
F:HIS24
|
2.1
|
71.6
|
1.0
|
|
NE2
|
E:HIS23
|
2.1
|
79.3
|
1.0
|
|
NB
|
E:HEM102
|
2.1
|
65.6
|
1.0
|
|
C4D
|
E:HEM102
|
2.9
|
63.4
|
1.0
|
|
C1A
|
E:HEM102
|
3.0
|
69.8
|
1.0
|
|
C1D
|
E:HEM102
|
3.0
|
59.1
|
1.0
|
|
C4C
|
E:HEM102
|
3.0
|
66.0
|
1.0
|
|
C4A
|
E:HEM102
|
3.1
|
69.6
|
1.0
|
|
CD2
|
F:HIS24
|
3.1
|
73.1
|
1.0
|
|
CD2
|
E:HIS23
|
3.1
|
79.4
|
1.0
|
|
CE1
|
F:HIS24
|
3.1
|
73.7
|
1.0
|
|
C4B
|
E:HEM102
|
3.1
|
60.5
|
1.0
|
|
C1B
|
E:HEM102
|
3.1
|
64.1
|
1.0
|
|
C1C
|
E:HEM102
|
3.1
|
62.2
|
1.0
|
|
CE1
|
E:HIS23
|
3.1
|
80.7
|
1.0
|
|
CHA
|
E:HEM102
|
3.3
|
63.1
|
1.0
|
|
CHD
|
E:HEM102
|
3.4
|
60.5
|
1.0
|
|
CHB
|
E:HEM102
|
3.5
|
65.8
|
1.0
|
|
CHC
|
E:HEM102
|
3.5
|
58.9
|
1.0
|
|
C2A
|
E:HEM102
|
4.1
|
74.0
|
1.0
|
|
C3D
|
E:HEM102
|
4.1
|
64.5
|
1.0
|
|
ND1
|
F:HIS24
|
4.2
|
75.5
|
1.0
|
|
C2D
|
E:HEM102
|
4.2
|
61.9
|
1.0
|
|
C3A
|
E:HEM102
|
4.2
|
77.9
|
1.0
|
|
CG
|
F:HIS24
|
4.2
|
72.9
|
1.0
|
|
ND1
|
E:HIS23
|
4.2
|
78.9
|
1.0
|
|
CG
|
E:HIS23
|
4.2
|
76.0
|
1.0
|
|
C3C
|
E:HEM102
|
4.3
|
65.4
|
1.0
|
|
C2C
|
E:HEM102
|
4.3
|
64.8
|
1.0
|
|
C2B
|
E:HEM102
|
4.3
|
63.5
|
1.0
|
|
C3B
|
E:HEM102
|
4.4
|
64.6
|
1.0
|
|
CE2
|
E:TYR19
|
4.9
|
70.7
|
1.0
|
|
Iron binding site 4 out
of 8 in 7cjj
Go back to
Iron Binding Sites List in 7cjj
Iron binding site 4 out
of 8 in the Photosystem II Structure in the S2 State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Photosystem II Structure in the S2 State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Fe201
b:53.0
occ:1.00
|
FE
|
V:HEC201
|
0.0
|
53.0
|
1.0
|
|
NA
|
V:HEC201
|
2.0
|
53.8
|
1.0
|
|
NC
|
V:HEC201
|
2.1
|
51.4
|
1.0
|
|
NB
|
V:HEC201
|
2.1
|
54.5
|
1.0
|
|
ND
|
V:HEC201
|
2.1
|
52.6
|
1.0
|
|
NE2
|
V:HIS41
|
2.1
|
45.1
|
1.0
|
|
NE2
|
V:HIS92
|
2.1
|
47.0
|
1.0
|
|
CD2
|
V:HIS92
|
3.0
|
46.9
|
1.0
|
|
C1A
|
V:HEC201
|
3.0
|
54.9
|
1.0
|
|
C4A
|
V:HEC201
|
3.0
|
54.4
|
1.0
|
|
CD2
|
V:HIS41
|
3.1
|
45.0
|
1.0
|
|
C4D
|
V:HEC201
|
3.1
|
45.7
|
1.0
|
|
C1B
|
V:HEC201
|
3.1
|
50.8
|
1.0
|
|
CE1
|
V:HIS41
|
3.1
|
52.3
|
1.0
|
|
C1D
|
V:HEC201
|
3.1
|
51.3
|
1.0
|
|
C4B
|
V:HEC201
|
3.1
|
50.1
|
1.0
|
|
C1C
|
V:HEC201
|
3.1
|
50.0
|
1.0
|
|
C4C
|
V:HEC201
|
3.1
|
55.0
|
1.0
|
|
CE1
|
V:HIS92
|
3.2
|
47.6
|
1.0
|
|
CHA
|
V:HEC201
|
3.4
|
46.1
|
1.0
|
|
CHB
|
V:HEC201
|
3.4
|
51.2
|
1.0
|
|
CHD
|
V:HEC201
|
3.4
|
53.3
|
1.0
|
|
CHC
|
V:HEC201
|
3.5
|
52.4
|
1.0
|
|
CG
|
V:HIS92
|
4.2
|
58.7
|
1.0
|
|
ND1
|
V:HIS41
|
4.2
|
45.5
|
1.0
|
|
CG
|
V:HIS41
|
4.2
|
44.5
|
1.0
|
|
ND1
|
V:HIS92
|
4.2
|
53.0
|
1.0
|
|
C2A
|
V:HEC201
|
4.3
|
50.1
|
1.0
|
|
C3A
|
V:HEC201
|
4.3
|
55.8
|
1.0
|
|
C2B
|
V:HEC201
|
4.3
|
47.2
|
1.0
|
|
C3D
|
V:HEC201
|
4.3
|
51.1
|
1.0
|
|
C3B
|
V:HEC201
|
4.3
|
47.0
|
1.0
|
|
C2C
|
V:HEC201
|
4.3
|
55.5
|
1.0
|
|
C2D
|
V:HEC201
|
4.3
|
45.1
|
1.0
|
|
C3C
|
V:HEC201
|
4.4
|
52.0
|
1.0
|
|
CE1
|
V:TYR75
|
4.8
|
48.3
|
1.0
|
|
OH
|
V:TYR75
|
5.0
|
53.5
|
1.0
|
|
Iron binding site 5 out
of 8 in 7cjj
Go back to
Iron Binding Sites List in 7cjj
Iron binding site 5 out
of 8 in the Photosystem II Structure in the S2 State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Photosystem II Structure in the S2 State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe401
b:56.8
occ:0.30
|
FE
|
a:FE2401
|
0.0
|
56.8
|
0.3
|
|
FE
|
a:FE2401
|
0.1
|
63.5
|
0.7
|
|
O2
|
d:BCT401
|
2.1
|
59.3
|
0.3
|
|
NE2
|
d:HIS214
|
2.1
|
48.1
|
0.3
|
|
NE2
|
d:HIS214
|
2.2
|
48.7
|
0.7
|
|
NE2
|
a:HIS215
|
2.2
|
52.9
|
0.3
|
|
NE2
|
a:HIS215
|
2.2
|
51.9
|
0.7
|
|
NE2
|
a:HIS272
|
2.3
|
46.5
|
0.3
|
|
NE2
|
a:HIS272
|
2.3
|
46.9
|
0.7
|
|
O1
|
d:BCT401
|
2.3
|
55.2
|
0.3
|
|
O2
|
d:BCT401
|
2.4
|
58.8
|
0.7
|
|
NE2
|
d:HIS268
|
2.4
|
47.8
|
0.3
|
|
NE2
|
d:HIS268
|
2.4
|
47.8
|
0.7
|
|
O1
|
d:BCT401
|
2.5
|
53.0
|
0.7
|
|
C
|
d:BCT401
|
2.5
|
59.7
|
0.3
|
|
C
|
d:BCT401
|
2.7
|
60.1
|
0.7
|
|
CE1
|
a:HIS215
|
3.0
|
51.0
|
0.3
|
|
CE1
|
d:HIS214
|
3.1
|
46.4
|
0.3
|
|
CE1
|
a:HIS215
|
3.1
|
51.0
|
0.7
|
|
CE1
|
d:HIS214
|
3.1
|
46.0
|
0.7
|
|
CD2
|
d:HIS214
|
3.2
|
46.3
|
0.7
|
|
CD2
|
d:HIS214
|
3.2
|
46.9
|
0.3
|
|
CE1
|
a:HIS272
|
3.2
|
47.1
|
0.3
|
|
CD2
|
a:HIS272
|
3.3
|
45.5
|
0.3
|
|
CE1
|
a:HIS272
|
3.3
|
47.5
|
0.7
|
|
CE1
|
d:HIS268
|
3.3
|
48.0
|
0.3
|
|
CD2
|
a:HIS215
|
3.3
|
49.3
|
0.7
|
|
CD2
|
a:HIS272
|
3.3
|
44.1
|
0.7
|
|
CD2
|
a:HIS215
|
3.3
|
49.8
|
0.3
|
|
CE1
|
d:HIS268
|
3.3
|
48.4
|
0.7
|
|
CD2
|
d:HIS268
|
3.4
|
47.1
|
0.7
|
|
CD2
|
d:HIS268
|
3.4
|
47.2
|
0.3
|
|
O3
|
d:BCT401
|
3.8
|
60.5
|
0.3
|
|
O3
|
d:BCT401
|
4.0
|
67.2
|
0.7
|
|
ND1
|
a:HIS215
|
4.2
|
50.6
|
0.3
|
|
ND1
|
d:HIS214
|
4.2
|
46.5
|
0.3
|
|
ND1
|
d:HIS214
|
4.2
|
46.4
|
0.7
|
|
ND1
|
a:HIS215
|
4.3
|
49.8
|
0.7
|
|
CG
|
d:HIS214
|
4.3
|
47.3
|
0.3
|
|
CG
|
d:HIS214
|
4.3
|
48.5
|
0.7
|
|
ND1
|
a:HIS272
|
4.4
|
48.0
|
0.3
|
|
CG
|
a:HIS215
|
4.4
|
49.7
|
0.3
|
|
CG
|
a:HIS215
|
4.4
|
49.8
|
0.7
|
|
CG
|
a:HIS272
|
4.4
|
47.7
|
0.3
|
|
ND1
|
a:HIS272
|
4.4
|
48.3
|
0.7
|
|
ND1
|
d:HIS268
|
4.5
|
47.3
|
0.3
|
|
CG
|
a:HIS272
|
4.5
|
48.8
|
0.7
|
|
ND1
|
d:HIS268
|
4.5
|
47.5
|
0.7
|
|
CG
|
d:HIS268
|
4.6
|
47.0
|
0.7
|
|
CG
|
d:HIS268
|
4.6
|
46.8
|
0.3
|
|
CG2
|
a:VAL219
|
4.7
|
44.0
|
1.0
|
|
CG2
|
d:VAL218
|
4.8
|
46.0
|
1.0
|
|
OH
|
d:TYR244
|
4.9
|
55.8
|
1.0
|
|
Iron binding site 6 out
of 8 in 7cjj
Go back to
Iron Binding Sites List in 7cjj
Iron binding site 6 out
of 8 in the Photosystem II Structure in the S2 State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Photosystem II Structure in the S2 State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe401
b:63.5
occ:0.70
|
FE
|
a:FE2401
|
0.0
|
63.5
|
0.7
|
|
FE
|
a:FE2401
|
0.1
|
56.8
|
0.3
|
|
O2
|
d:BCT401
|
2.0
|
59.3
|
0.3
|
|
NE2
|
a:HIS215
|
2.2
|
52.9
|
0.3
|
|
NE2
|
a:HIS215
|
2.2
|
51.9
|
0.7
|
|
NE2
|
d:HIS214
|
2.2
|
48.1
|
0.3
|
|
NE2
|
d:HIS214
|
2.2
|
48.7
|
0.7
|
|
NE2
|
a:HIS272
|
2.3
|
46.5
|
0.3
|
|
O2
|
d:BCT401
|
2.3
|
58.8
|
0.7
|
|
NE2
|
a:HIS272
|
2.3
|
46.9
|
0.7
|
|
O1
|
d:BCT401
|
2.3
|
55.2
|
0.3
|
|
NE2
|
d:HIS268
|
2.4
|
47.8
|
0.3
|
|
NE2
|
d:HIS268
|
2.4
|
47.8
|
0.7
|
|
O1
|
d:BCT401
|
2.4
|
53.0
|
0.7
|
|
C
|
d:BCT401
|
2.4
|
59.7
|
0.3
|
|
C
|
d:BCT401
|
2.7
|
60.1
|
0.7
|
|
CE1
|
a:HIS215
|
3.0
|
51.0
|
0.3
|
|
CE1
|
a:HIS215
|
3.0
|
51.0
|
0.7
|
|
CE1
|
d:HIS214
|
3.1
|
46.4
|
0.3
|
|
CE1
|
d:HIS214
|
3.2
|
46.0
|
0.7
|
|
CE1
|
a:HIS272
|
3.2
|
47.1
|
0.3
|
|
CD2
|
d:HIS214
|
3.2
|
46.3
|
0.7
|
|
CE1
|
a:HIS272
|
3.2
|
47.5
|
0.7
|
|
CD2
|
d:HIS214
|
3.3
|
46.9
|
0.3
|
|
CE1
|
d:HIS268
|
3.3
|
48.0
|
0.3
|
|
CD2
|
a:HIS272
|
3.3
|
45.5
|
0.3
|
|
CD2
|
a:HIS215
|
3.3
|
49.3
|
0.7
|
|
CE1
|
d:HIS268
|
3.3
|
48.4
|
0.7
|
|
CD2
|
a:HIS272
|
3.3
|
44.1
|
0.7
|
|
CD2
|
a:HIS215
|
3.4
|
49.8
|
0.3
|
|
CD2
|
d:HIS268
|
3.4
|
47.1
|
0.7
|
|
CD2
|
d:HIS268
|
3.4
|
47.2
|
0.3
|
|
O3
|
d:BCT401
|
3.7
|
60.5
|
0.3
|
|
O3
|
d:BCT401
|
4.0
|
67.2
|
0.7
|
|
ND1
|
a:HIS215
|
4.2
|
50.6
|
0.3
|
|
ND1
|
a:HIS215
|
4.2
|
49.8
|
0.7
|
|
ND1
|
d:HIS214
|
4.3
|
46.5
|
0.3
|
|
ND1
|
d:HIS214
|
4.3
|
46.4
|
0.7
|
|
ND1
|
a:HIS272
|
4.3
|
48.0
|
0.3
|
|
CG
|
d:HIS214
|
4.4
|
47.3
|
0.3
|
|
CG
|
d:HIS214
|
4.4
|
48.5
|
0.7
|
|
CG
|
a:HIS215
|
4.4
|
49.7
|
0.3
|
|
CG
|
a:HIS215
|
4.4
|
49.8
|
0.7
|
|
ND1
|
a:HIS272
|
4.4
|
48.3
|
0.7
|
|
CG
|
a:HIS272
|
4.4
|
47.7
|
0.3
|
|
ND1
|
d:HIS268
|
4.5
|
47.3
|
0.3
|
|
CG
|
a:HIS272
|
4.5
|
48.8
|
0.7
|
|
ND1
|
d:HIS268
|
4.5
|
47.5
|
0.7
|
|
CG
|
d:HIS268
|
4.6
|
47.0
|
0.7
|
|
CG
|
d:HIS268
|
4.6
|
46.8
|
0.3
|
|
CG2
|
a:VAL219
|
4.7
|
44.0
|
1.0
|
|
CG2
|
d:VAL218
|
4.8
|
46.0
|
1.0
|
|
OH
|
d:TYR244
|
4.9
|
55.8
|
1.0
|
|
Iron binding site 7 out
of 8 in 7cjj
Go back to
Iron Binding Sites List in 7cjj
Iron binding site 7 out
of 8 in the Photosystem II Structure in the S2 State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Photosystem II Structure in the S2 State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
e:Fe102
b:81.1
occ:1.00
|
FE
|
e:HEM102
|
0.0
|
81.1
|
1.0
|
|
ND
|
e:HEM102
|
2.0
|
67.7
|
1.0
|
|
NA
|
e:HEM102
|
2.0
|
80.6
|
1.0
|
|
NC
|
e:HEM102
|
2.1
|
78.3
|
1.0
|
|
NE2
|
e:HIS23
|
2.1
|
84.5
|
1.0
|
|
NE2
|
f:HIS24
|
2.1
|
73.0
|
1.0
|
|
NB
|
e:HEM102
|
2.1
|
74.3
|
1.0
|
|
CD2
|
f:HIS24
|
2.9
|
75.1
|
1.0
|
|
C4D
|
e:HEM102
|
2.9
|
68.6
|
1.0
|
|
C1D
|
e:HEM102
|
3.0
|
65.5
|
1.0
|
|
C1A
|
e:HEM102
|
3.0
|
73.3
|
1.0
|
|
CD2
|
e:HIS23
|
3.0
|
83.3
|
1.0
|
|
C4C
|
e:HEM102
|
3.0
|
70.6
|
1.0
|
|
C4A
|
e:HEM102
|
3.1
|
83.5
|
1.0
|
|
C4B
|
e:HEM102
|
3.1
|
76.0
|
1.0
|
|
C1B
|
e:HEM102
|
3.1
|
77.5
|
1.0
|
|
C1C
|
e:HEM102
|
3.1
|
76.6
|
1.0
|
|
CE1
|
e:HIS23
|
3.1
|
84.8
|
1.0
|
|
CE1
|
f:HIS24
|
3.2
|
72.6
|
1.0
|
|
CHA
|
e:HEM102
|
3.3
|
68.0
|
1.0
|
|
CHD
|
e:HEM102
|
3.4
|
64.0
|
1.0
|
|
CHB
|
e:HEM102
|
3.5
|
81.3
|
1.0
|
|
CHC
|
e:HEM102
|
3.5
|
74.2
|
1.0
|
|
CG
|
f:HIS24
|
4.1
|
74.7
|
1.0
|
|
C3D
|
e:HEM102
|
4.2
|
70.8
|
1.0
|
|
C2A
|
e:HEM102
|
4.2
|
87.8
|
1.0
|
|
CG
|
e:HIS23
|
4.2
|
87.2
|
1.0
|
|
C2D
|
e:HEM102
|
4.2
|
75.1
|
1.0
|
|
ND1
|
e:HIS23
|
4.2
|
88.4
|
1.0
|
|
ND1
|
f:HIS24
|
4.2
|
78.2
|
1.0
|
|
C3A
|
e:HEM102
|
4.2
|
86.9
|
1.0
|
|
C3C
|
e:HEM102
|
4.3
|
70.5
|
1.0
|
|
C2C
|
e:HEM102
|
4.3
|
77.2
|
1.0
|
|
C2B
|
e:HEM102
|
4.3
|
75.8
|
1.0
|
|
C3B
|
e:HEM102
|
4.3
|
78.2
|
1.0
|
|
CE2
|
e:TYR19
|
4.9
|
81.5
|
1.0
|
|
NE1
|
f:TRP20
|
4.9
|
78.9
|
1.0
|
|
Iron binding site 8 out
of 8 in 7cjj
Go back to
Iron Binding Sites List in 7cjj
Iron binding site 8 out
of 8 in the Photosystem II Structure in the S2 State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Photosystem II Structure in the S2 State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
v:Fe202
b:62.1
occ:1.00
|
FE
|
v:HEC202
|
0.0
|
62.1
|
1.0
|
|
NA
|
v:HEC202
|
2.0
|
56.4
|
1.0
|
|
ND
|
v:HEC202
|
2.1
|
63.0
|
1.0
|
|
NE2
|
v:HIS41
|
2.1
|
54.7
|
1.0
|
|
NB
|
v:HEC202
|
2.1
|
67.7
|
1.0
|
|
NC
|
v:HEC202
|
2.1
|
60.6
|
1.0
|
|
NE2
|
v:HIS92
|
2.1
|
57.0
|
1.0
|
|
CE1
|
v:HIS41
|
3.0
|
54.1
|
1.0
|
|
CD2
|
v:HIS92
|
3.0
|
56.8
|
1.0
|
|
C1A
|
v:HEC202
|
3.0
|
60.0
|
1.0
|
|
C4A
|
v:HEC202
|
3.0
|
58.0
|
1.0
|
|
C4D
|
v:HEC202
|
3.0
|
62.5
|
1.0
|
|
C1D
|
v:HEC202
|
3.1
|
63.0
|
1.0
|
|
C4B
|
v:HEC202
|
3.1
|
67.4
|
1.0
|
|
C1B
|
v:HEC202
|
3.1
|
57.0
|
1.0
|
|
C1C
|
v:HEC202
|
3.1
|
59.6
|
1.0
|
|
CD2
|
v:HIS41
|
3.1
|
56.9
|
1.0
|
|
C4C
|
v:HEC202
|
3.1
|
58.8
|
1.0
|
|
CE1
|
v:HIS92
|
3.1
|
57.8
|
1.0
|
|
CHA
|
v:HEC202
|
3.4
|
59.6
|
1.0
|
|
CHB
|
v:HEC202
|
3.4
|
61.3
|
1.0
|
|
CHC
|
v:HEC202
|
3.4
|
62.6
|
1.0
|
|
CHD
|
v:HEC202
|
3.5
|
57.1
|
1.0
|
|
ND1
|
v:HIS41
|
4.1
|
56.8
|
1.0
|
|
CG
|
v:HIS92
|
4.2
|
60.1
|
1.0
|
|
ND1
|
v:HIS92
|
4.2
|
62.9
|
1.0
|
|
CG
|
v:HIS41
|
4.2
|
60.1
|
1.0
|
|
C2A
|
v:HEC202
|
4.2
|
59.4
|
1.0
|
|
C3A
|
v:HEC202
|
4.2
|
57.2
|
1.0
|
|
C3D
|
v:HEC202
|
4.3
|
61.0
|
1.0
|
|
C2D
|
v:HEC202
|
4.3
|
66.7
|
1.0
|
|
C2B
|
v:HEC202
|
4.3
|
57.5
|
1.0
|
|
C3B
|
v:HEC202
|
4.3
|
59.2
|
1.0
|
|
C2C
|
v:HEC202
|
4.3
|
60.3
|
1.0
|
|
C3C
|
v:HEC202
|
4.4
|
59.2
|
1.0
|
|
CE1
|
v:TYR75
|
4.9
|
63.2
|
1.0
|
|
OH
|
v:TYR75
|
5.0
|
58.0
|
1.0
|
|
Reference:
H.Li,
Y.Nakajima,
T.Nomura,
M.Sugahara,
S.Yonekura,
S.K.Chan,
T.Nakane,
T.Yamane,
Y.Umena,
M.Suzuki,
T.Masuda,
T.Motomura,
H.Naitow,
Y.Matsuura,
T.Kimura,
K.Tono,
S.Owada,
Y.Joti,
R.Tanaka,
E.Nango,
F.Akita,
M.Kubo,
S.Iwata,
J.-R.Shen,
M.Suga.
Capturing Structural Changes of the S1 to S2 Transition of Photosystem II Using Time-Resolved Serial Femtosecond Crystallography Iucrj 2021.
ISSN: ESSN 2052-2525
DOI: 10.1107/S2052252521002177
Page generated: Thu Aug 8 03:05:03 2024
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