Iron in PDB 7cpi: His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
Enzymatic activity of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
All present enzymatic activity of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding:
1.16.3.1;
Protein crystallography data
The structure of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding, PDB code: 7cpi
was solved by
C.Gu,
T.Zhang,
G.Zhao,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
34.11 /
2.60
|
|
Space group
|
I 4
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
126.374,
126.374,
177.109,
90,
90,
90
|
|
R / Rfree (%)
|
19.4 /
27.2
|
Other elements in 7cpi:
The structure of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
(pdb code 7cpi). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding, PDB code: 7cpi:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 1 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:36.8
occ:1.00
|
OE1
|
E:GLU24
|
1.9
|
42.3
|
1.0
|
|
ND1
|
E:HIS63
|
2.0
|
48.8
|
1.0
|
|
OE1
|
E:GLU60
|
2.1
|
41.7
|
1.0
|
|
HE21
|
E:GLN139
|
2.7
|
65.1
|
1.0
|
|
CE1
|
E:HIS63
|
2.8
|
50.6
|
1.0
|
|
HE22
|
E:GLN139
|
2.8
|
65.1
|
1.0
|
|
HE1
|
E:HIS63
|
3.0
|
60.5
|
1.0
|
|
CD
|
E:GLU24
|
3.0
|
40.8
|
1.0
|
|
CD
|
E:GLU60
|
3.1
|
44.4
|
1.0
|
|
CG
|
E:HIS63
|
3.1
|
48.9
|
1.0
|
|
NE2
|
E:GLN139
|
3.1
|
54.4
|
1.0
|
|
FE
|
E:FE202
|
3.1
|
42.5
|
1.0
|
|
HG11
|
E:VAL108
|
3.2
|
48.4
|
1.0
|
|
HB2
|
E:HIS63
|
3.4
|
55.4
|
1.0
|
|
OE2
|
E:GLU60
|
3.4
|
42.2
|
1.0
|
|
OE2
|
E:GLU24
|
3.4
|
47.9
|
1.0
|
|
HB3
|
E:HIS63
|
3.5
|
55.4
|
1.0
|
|
CB
|
E:HIS63
|
3.5
|
46.3
|
1.0
|
|
HA
|
E:GLU60
|
3.6
|
54.2
|
1.0
|
|
NE2
|
E:HIS63
|
4.0
|
49.0
|
1.0
|
|
CD2
|
E:HIS63
|
4.1
|
34.7
|
1.0
|
|
CG1
|
E:VAL108
|
4.2
|
40.5
|
1.0
|
|
HA
|
E:GLU24
|
4.2
|
50.0
|
1.0
|
|
CG
|
E:GLU24
|
4.4
|
39.3
|
1.0
|
|
HB3
|
E:GLU24
|
4.4
|
44.9
|
1.0
|
|
CG
|
E:GLU60
|
4.4
|
37.5
|
1.0
|
|
CD
|
E:GLN139
|
4.4
|
40.3
|
1.0
|
|
HG13
|
E:VAL108
|
4.5
|
48.4
|
1.0
|
|
HG12
|
E:VAL108
|
4.5
|
48.4
|
1.0
|
|
CA
|
E:GLU60
|
4.5
|
45.3
|
1.0
|
|
HG21
|
E:VAL108
|
4.5
|
52.0
|
1.0
|
|
HB3
|
E:GLU60
|
4.6
|
51.1
|
1.0
|
|
HG3
|
E:GLU24
|
4.6
|
47.1
|
1.0
|
|
HE2
|
E:HIS63
|
4.7
|
58.7
|
1.0
|
|
OE1
|
E:GLU105
|
4.8
|
54.6
|
1.0
|
|
HD1
|
E:TYR135
|
4.8
|
46.9
|
1.0
|
|
CB
|
E:GLU60
|
4.8
|
42.7
|
1.0
|
|
CB
|
E:GLU24
|
4.8
|
37.5
|
1.0
|
|
HG2
|
E:GLU60
|
4.8
|
44.9
|
1.0
|
|
HB3
|
E:ALA27
|
4.9
|
48.9
|
1.0
|
|
CA
|
E:GLU24
|
5.0
|
41.7
|
1.0
|
|
HD2
|
E:HIS63
|
5.0
|
41.5
|
1.0
|
|
Iron binding site 2 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 2 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe202
b:42.5
occ:1.00
|
OE2
|
E:GLU60
|
2.0
|
42.2
|
1.0
|
|
OE1
|
E:GLU105
|
2.0
|
54.6
|
1.0
|
|
HE22
|
E:GLN139
|
2.2
|
65.1
|
1.0
|
|
OE2
|
E:GLU105
|
2.3
|
49.3
|
1.0
|
|
CD
|
E:GLU105
|
2.5
|
45.6
|
1.0
|
|
NE2
|
E:GLN139
|
2.7
|
54.4
|
1.0
|
|
CD
|
E:GLU60
|
2.9
|
44.4
|
1.0
|
|
HE21
|
E:GLN139
|
3.0
|
65.1
|
1.0
|
|
FE
|
E:FE201
|
3.1
|
36.8
|
1.0
|
|
OE1
|
E:GLU60
|
3.2
|
41.7
|
1.0
|
|
HE1
|
E:HIS63
|
3.3
|
60.5
|
1.0
|
|
CD
|
E:GLN139
|
3.6
|
40.3
|
1.0
|
|
HE2
|
E:TYR31
|
3.8
|
49.8
|
1.0
|
|
CE1
|
E:HIS63
|
3.9
|
50.6
|
1.0
|
|
OE1
|
E:GLN139
|
4.0
|
44.5
|
1.0
|
|
CG
|
E:GLU105
|
4.0
|
43.9
|
1.0
|
|
HG11
|
E:VAL108
|
4.0
|
48.4
|
1.0
|
|
HA
|
E:GLU105
|
4.1
|
67.0
|
1.0
|
|
ND1
|
E:HIS63
|
4.1
|
48.8
|
1.0
|
|
HG
|
E:SER142
|
4.2
|
72.9
|
1.0
|
|
CG
|
E:GLU60
|
4.2
|
37.5
|
1.0
|
|
HG21
|
E:VAL108
|
4.2
|
52.0
|
1.0
|
|
HH
|
E:TYR31
|
4.2
|
50.5
|
1.0
|
|
HG2
|
E:GLU60
|
4.3
|
44.9
|
1.0
|
|
HG3
|
E:GLU105
|
4.4
|
52.5
|
1.0
|
|
HG2
|
E:GLU105
|
4.5
|
52.5
|
1.0
|
|
HG3
|
E:GLU60
|
4.5
|
44.9
|
1.0
|
|
HB
|
E:VAL108
|
4.6
|
47.3
|
1.0
|
|
OE1
|
E:GLU138
|
4.6
|
74.6
|
1.0
|
|
HB3
|
E:GLU105
|
4.6
|
56.9
|
1.0
|
|
HG2
|
E:GLN139
|
4.6
|
58.5
|
1.0
|
|
HB1
|
E:ALA27
|
4.7
|
48.9
|
1.0
|
|
CE2
|
E:TYR31
|
4.7
|
41.6
|
1.0
|
|
CB
|
E:GLU105
|
4.7
|
47.5
|
1.0
|
|
CG
|
E:GLN139
|
4.8
|
48.8
|
1.0
|
|
OE1
|
E:GLU24
|
4.9
|
42.3
|
1.0
|
|
CG1
|
E:VAL108
|
4.9
|
40.5
|
1.0
|
|
CA
|
E:GLU105
|
4.9
|
55.9
|
1.0
|
|
OH
|
E:TYR31
|
4.9
|
42.2
|
1.0
|
|
HA
|
E:GLU60
|
5.0
|
54.2
|
1.0
|
|
Iron binding site 3 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 3 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:38.5
occ:1.00
|
OE1
|
A:GLU24
|
1.9
|
49.5
|
1.0
|
|
ND1
|
A:HIS63
|
2.0
|
44.9
|
1.0
|
|
OE1
|
A:GLU60
|
2.1
|
42.3
|
1.0
|
|
CE1
|
A:HIS63
|
2.8
|
45.5
|
1.0
|
|
CD
|
A:GLU24
|
2.8
|
43.2
|
1.0
|
|
HE1
|
A:HIS63
|
2.9
|
54.5
|
1.0
|
|
CG
|
A:HIS63
|
3.1
|
46.4
|
1.0
|
|
OE2
|
A:GLU24
|
3.1
|
46.0
|
1.0
|
|
CD
|
A:GLU60
|
3.1
|
50.4
|
1.0
|
|
HG11
|
A:VAL108
|
3.3
|
44.7
|
1.0
|
|
FE
|
A:FE202
|
3.4
|
44.3
|
1.0
|
|
HB2
|
A:HIS63
|
3.4
|
55.0
|
1.0
|
|
HB3
|
A:HIS63
|
3.5
|
55.0
|
1.0
|
|
OE2
|
A:GLU60
|
3.5
|
47.3
|
1.0
|
|
HA
|
A:GLU60
|
3.6
|
59.1
|
1.0
|
|
CB
|
A:HIS63
|
3.6
|
46.0
|
1.0
|
|
NE2
|
A:HIS63
|
3.9
|
49.1
|
1.0
|
|
CD2
|
A:HIS63
|
4.0
|
42.8
|
1.0
|
|
CG1
|
A:VAL108
|
4.2
|
37.3
|
1.0
|
|
CG
|
A:GLU24
|
4.2
|
41.8
|
1.0
|
|
HB3
|
A:GLU24
|
4.2
|
53.0
|
1.0
|
|
HA
|
A:GLU24
|
4.4
|
53.3
|
1.0
|
|
HG21
|
A:VAL108
|
4.4
|
54.3
|
1.0
|
|
CG
|
A:GLU60
|
4.4
|
48.3
|
1.0
|
|
HG12
|
A:VAL108
|
4.5
|
44.7
|
1.0
|
|
CA
|
A:GLU60
|
4.5
|
49.4
|
1.0
|
|
HB3
|
A:GLU60
|
4.5
|
56.0
|
1.0
|
|
OE1
|
A:GLN139
|
4.5
|
40.4
|
1.0
|
|
HD1
|
A:TYR135
|
4.6
|
57.8
|
1.0
|
|
HG3
|
A:GLU24
|
4.6
|
50.0
|
1.0
|
|
HE2
|
A:HIS63
|
4.6
|
58.8
|
1.0
|
|
HG13
|
A:VAL108
|
4.6
|
44.7
|
1.0
|
|
CB
|
A:GLU24
|
4.7
|
44.3
|
1.0
|
|
CB
|
A:GLU60
|
4.7
|
46.8
|
1.0
|
|
HE1
|
A:TYR135
|
4.8
|
51.6
|
1.0
|
|
HG2
|
A:GLU24
|
4.8
|
50.0
|
1.0
|
|
OE1
|
A:GLU105
|
4.9
|
49.2
|
1.0
|
|
HG2
|
A:GLU60
|
4.9
|
57.8
|
1.0
|
|
HB3
|
A:ALA27
|
4.9
|
58.5
|
1.0
|
|
HD2
|
A:HIS63
|
4.9
|
51.2
|
1.0
|
|
HD11
|
A:LEU112
|
5.0
|
51.1
|
1.0
|
|
Iron binding site 4 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 4 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe202
b:44.3
occ:1.00
|
OE2
|
A:GLU60
|
1.9
|
47.3
|
1.0
|
|
OE1
|
A:GLU105
|
2.1
|
49.2
|
1.0
|
|
OE2
|
A:GLU105
|
2.1
|
50.8
|
1.0
|
|
CD
|
A:GLU105
|
2.4
|
44.9
|
1.0
|
|
CD
|
A:GLU60
|
2.9
|
50.4
|
1.0
|
|
HE22
|
A:GLN139
|
3.3
|
54.5
|
1.0
|
|
OE1
|
A:GLU60
|
3.3
|
42.3
|
1.0
|
|
FE
|
A:FE201
|
3.4
|
38.5
|
1.0
|
|
HE1
|
A:HIS63
|
3.5
|
54.5
|
1.0
|
|
HE2
|
A:TYR31
|
3.7
|
60.8
|
1.0
|
|
OE1
|
A:GLN139
|
3.9
|
40.4
|
1.0
|
|
CG
|
A:GLU105
|
4.0
|
44.0
|
1.0
|
|
NE2
|
A:GLN139
|
4.1
|
45.5
|
1.0
|
|
HG21
|
A:VAL108
|
4.1
|
54.3
|
1.0
|
|
HA
|
A:GLU105
|
4.1
|
60.5
|
1.0
|
|
HH
|
A:TYR31
|
4.1
|
61.7
|
1.0
|
|
CG
|
A:GLU60
|
4.2
|
48.3
|
1.0
|
|
CE1
|
A:HIS63
|
4.2
|
45.5
|
1.0
|
|
HG2
|
A:GLU60
|
4.2
|
57.8
|
1.0
|
|
HG3
|
A:GLU105
|
4.3
|
52.6
|
1.0
|
|
HG11
|
A:VAL108
|
4.3
|
44.7
|
1.0
|
|
ND1
|
A:HIS63
|
4.4
|
44.9
|
1.0
|
|
HG2
|
A:GLU105
|
4.4
|
52.6
|
1.0
|
|
HG
|
A:SER142
|
4.4
|
71.0
|
1.0
|
|
CD
|
A:GLN139
|
4.5
|
44.9
|
1.0
|
|
HG3
|
A:GLU60
|
4.5
|
57.8
|
1.0
|
|
HB
|
A:VAL108
|
4.5
|
56.5
|
1.0
|
|
CE2
|
A:TYR31
|
4.6
|
50.8
|
1.0
|
|
HB1
|
A:ALA27
|
4.6
|
58.5
|
1.0
|
|
HB3
|
A:GLU105
|
4.7
|
56.6
|
1.0
|
|
HE21
|
A:GLN139
|
4.8
|
54.5
|
1.0
|
|
CB
|
A:GLU105
|
4.8
|
47.3
|
1.0
|
|
OE1
|
A:GLU24
|
4.9
|
49.5
|
1.0
|
|
OH
|
A:TYR31
|
4.9
|
51.5
|
1.0
|
|
CA
|
A:GLU105
|
4.9
|
50.5
|
1.0
|
|
CG2
|
A:VAL108
|
4.9
|
45.4
|
1.0
|
|
CG1
|
A:VAL108
|
5.0
|
37.3
|
1.0
|
|
Iron binding site 5 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 5 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:41.1
occ:1.00
|
ND1
|
B:HIS63
|
2.0
|
43.8
|
1.0
|
|
OE1
|
B:GLU60
|
2.1
|
46.1
|
1.0
|
|
OE1
|
B:GLU24
|
2.1
|
39.2
|
1.0
|
|
CE1
|
B:HIS63
|
2.6
|
42.7
|
1.0
|
|
HE1
|
B:HIS63
|
2.6
|
51.1
|
1.0
|
|
FE
|
B:FE202
|
3.1
|
44.0
|
1.0
|
|
CD
|
B:GLU60
|
3.1
|
44.5
|
1.0
|
|
HG11
|
B:VAL108
|
3.2
|
46.0
|
1.0
|
|
CG
|
B:HIS63
|
3.2
|
44.4
|
1.0
|
|
CD
|
B:GLU24
|
3.2
|
42.3
|
1.0
|
|
OE2
|
B:GLU60
|
3.5
|
43.2
|
1.0
|
|
OE2
|
B:GLU24
|
3.5
|
39.0
|
1.0
|
|
HB3
|
B:HIS63
|
3.7
|
52.2
|
1.0
|
|
HA
|
B:GLU60
|
3.7
|
64.0
|
1.0
|
|
HB2
|
B:HIS63
|
3.8
|
52.2
|
1.0
|
|
CB
|
B:HIS63
|
3.8
|
43.6
|
1.0
|
|
NE2
|
B:HIS63
|
3.8
|
47.7
|
1.0
|
|
CG1
|
B:VAL108
|
4.0
|
38.5
|
1.0
|
|
CD2
|
B:HIS63
|
4.1
|
35.1
|
1.0
|
|
HG12
|
B:VAL108
|
4.2
|
46.0
|
1.0
|
|
HA
|
B:GLU24
|
4.3
|
58.3
|
1.0
|
|
HG13
|
B:VAL108
|
4.5
|
46.0
|
1.0
|
|
CG
|
B:GLU60
|
4.5
|
47.1
|
1.0
|
|
HE2
|
B:HIS63
|
4.5
|
57.1
|
1.0
|
|
CG
|
B:GLU24
|
4.5
|
38.1
|
1.0
|
|
CA
|
B:GLU60
|
4.6
|
53.5
|
1.0
|
|
HB3
|
B:GLU24
|
4.6
|
55.0
|
1.0
|
|
HB3
|
B:GLU60
|
4.6
|
54.5
|
1.0
|
|
HD1
|
B:TYR135
|
4.7
|
49.9
|
1.0
|
|
OE1
|
B:GLU105
|
4.7
|
54.2
|
1.0
|
|
CB
|
B:GLU60
|
4.8
|
45.6
|
1.0
|
|
OE1
|
B:GLN139
|
4.8
|
31.1
|
1.0
|
|
HG22
|
B:VAL108
|
4.8
|
44.1
|
1.0
|
|
HD11
|
B:LEU112
|
4.9
|
39.5
|
1.0
|
|
HB3
|
B:ALA27
|
4.9
|
58.3
|
1.0
|
|
HG3
|
B:GLU24
|
4.9
|
45.5
|
1.0
|
|
HG2
|
B:GLU60
|
4.9
|
56.4
|
1.0
|
|
HE1
|
B:TYR135
|
4.9
|
57.5
|
1.0
|
|
CB
|
B:GLU24
|
5.0
|
46.0
|
1.0
|
|
HD2
|
B:HIS63
|
5.0
|
42.0
|
1.0
|
|
HG21
|
B:VAL108
|
5.0
|
44.1
|
1.0
|
|
Iron binding site 6 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 6 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe202
b:44.0
occ:1.00
|
OE2
|
B:GLU60
|
1.9
|
43.2
|
1.0
|
|
OE2
|
B:GLU105
|
2.1
|
53.7
|
1.0
|
|
OE1
|
B:GLU105
|
2.2
|
54.2
|
1.0
|
|
CD
|
B:GLU105
|
2.5
|
43.1
|
1.0
|
|
CD
|
B:GLU60
|
2.8
|
44.5
|
1.0
|
|
OE1
|
B:GLU60
|
3.1
|
46.1
|
1.0
|
|
HE1
|
B:HIS63
|
3.1
|
51.1
|
1.0
|
|
FE
|
B:FE201
|
3.1
|
41.1
|
1.0
|
|
HE2
|
B:TYR31
|
3.8
|
53.6
|
1.0
|
|
OE1
|
B:GLN139
|
3.8
|
31.1
|
1.0
|
|
CE1
|
B:HIS63
|
3.9
|
42.7
|
1.0
|
|
CG
|
B:GLU105
|
4.0
|
45.2
|
1.0
|
|
HG11
|
B:VAL108
|
4.1
|
46.0
|
1.0
|
|
HH
|
B:TYR31
|
4.1
|
62.1
|
1.0
|
|
CG
|
B:GLU60
|
4.1
|
47.1
|
1.0
|
|
HE22
|
B:GLN139
|
4.2
|
53.5
|
1.0
|
|
ND1
|
B:HIS63
|
4.2
|
43.8
|
1.0
|
|
HG2
|
B:GLU60
|
4.2
|
56.4
|
1.0
|
|
HA
|
B:GLU105
|
4.3
|
61.8
|
1.0
|
|
HG3
|
B:GLU105
|
4.4
|
54.1
|
1.0
|
|
HG21
|
B:VAL108
|
4.4
|
44.1
|
1.0
|
|
HG2
|
B:GLU105
|
4.4
|
54.1
|
1.0
|
|
HG3
|
B:GLU60
|
4.4
|
56.4
|
1.0
|
|
HG
|
B:SER142
|
4.5
|
63.4
|
1.0
|
|
HB
|
B:VAL108
|
4.7
|
50.2
|
1.0
|
|
HB1
|
B:ALA27
|
4.7
|
58.3
|
1.0
|
|
CE2
|
B:TYR31
|
4.7
|
44.8
|
1.0
|
|
CD
|
B:GLN139
|
4.7
|
45.6
|
1.0
|
|
NE2
|
B:GLN139
|
4.8
|
44.7
|
1.0
|
|
HB3
|
B:GLU105
|
4.8
|
56.9
|
1.0
|
|
CG1
|
B:VAL108
|
4.8
|
38.5
|
1.0
|
|
CB
|
B:GLU105
|
4.9
|
47.5
|
1.0
|
|
HG12
|
B:VAL108
|
4.9
|
46.0
|
1.0
|
|
OH
|
B:TYR31
|
4.9
|
51.9
|
1.0
|
|
HA
|
B:GLU60
|
5.0
|
64.0
|
1.0
|
|
Iron binding site 7 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 7 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:38.4
occ:1.00
|
ND1
|
C:HIS63
|
2.0
|
42.2
|
1.0
|
|
OE1
|
C:GLU24
|
2.0
|
47.0
|
1.0
|
|
OE1
|
C:GLU60
|
2.1
|
36.9
|
1.0
|
|
HE1
|
C:HIS63
|
2.6
|
46.9
|
1.0
|
|
CE1
|
C:HIS63
|
2.6
|
39.2
|
1.0
|
|
CD
|
C:GLU60
|
3.0
|
37.0
|
1.0
|
|
CD
|
C:GLU24
|
3.1
|
44.1
|
1.0
|
|
HG11
|
C:VAL108
|
3.1
|
43.7
|
1.0
|
|
FE
|
C:FE202
|
3.2
|
41.3
|
1.0
|
|
OE2
|
C:GLU60
|
3.2
|
36.9
|
1.0
|
|
CG
|
C:HIS63
|
3.2
|
50.0
|
1.0
|
|
OE2
|
C:GLU24
|
3.5
|
41.3
|
1.0
|
|
HB2
|
C:HIS63
|
3.7
|
60.6
|
1.0
|
|
HA
|
C:GLU60
|
3.7
|
49.9
|
1.0
|
|
NE2
|
C:HIS63
|
3.8
|
41.2
|
1.0
|
|
HB3
|
C:HIS63
|
3.8
|
60.6
|
1.0
|
|
CB
|
C:HIS63
|
3.8
|
50.7
|
1.0
|
|
OE1
|
C:GLN139
|
4.0
|
36.8
|
1.0
|
|
CG1
|
C:VAL108
|
4.1
|
36.5
|
1.0
|
|
CD2
|
C:HIS63
|
4.1
|
36.4
|
1.0
|
|
HG12
|
C:VAL108
|
4.2
|
43.7
|
1.0
|
|
HG21
|
C:VAL108
|
4.3
|
38.7
|
1.0
|
|
CG
|
C:GLU60
|
4.3
|
39.5
|
1.0
|
|
HA
|
C:GLU24
|
4.4
|
54.4
|
1.0
|
|
HB3
|
C:GLU24
|
4.4
|
56.5
|
1.0
|
|
CG
|
C:GLU24
|
4.4
|
42.5
|
1.0
|
|
HE2
|
C:HIS63
|
4.5
|
49.3
|
1.0
|
|
HG13
|
C:VAL108
|
4.6
|
43.7
|
1.0
|
|
CA
|
C:GLU60
|
4.6
|
41.7
|
1.0
|
|
HD1
|
C:TYR135
|
4.6
|
50.7
|
1.0
|
|
HB3
|
C:GLU60
|
4.6
|
47.7
|
1.0
|
|
HD11
|
C:LEU112
|
4.7
|
49.0
|
1.0
|
|
HG2
|
C:GLU60
|
4.7
|
47.3
|
1.0
|
|
HG3
|
C:GLU24
|
4.8
|
50.9
|
1.0
|
|
CB
|
C:GLU60
|
4.8
|
39.8
|
1.0
|
|
HE22
|
C:GLN139
|
4.8
|
57.2
|
1.0
|
|
HB
|
C:VAL108
|
4.8
|
44.4
|
1.0
|
|
CB
|
C:GLU24
|
4.8
|
47.2
|
1.0
|
|
CB
|
C:VAL108
|
4.9
|
37.1
|
1.0
|
|
HG3
|
C:GLU60
|
4.9
|
47.3
|
1.0
|
|
HE1
|
C:TYR135
|
4.9
|
45.3
|
1.0
|
|
CD
|
C:GLN139
|
5.0
|
43.4
|
1.0
|
|
HB3
|
C:ALA27
|
5.0
|
50.0
|
1.0
|
|
OE2
|
C:GLU105
|
5.0
|
41.4
|
1.0
|
|
Iron binding site 8 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 8 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe202
b:41.3
occ:1.00
|
OE2
|
C:GLU105
|
2.0
|
41.4
|
1.0
|
|
OE2
|
C:GLU60
|
2.0
|
36.9
|
1.0
|
|
OE1
|
C:GLU105
|
2.3
|
61.8
|
1.0
|
|
CD
|
C:GLU105
|
2.5
|
45.6
|
1.0
|
|
HE22
|
C:GLN139
|
2.9
|
57.2
|
1.0
|
|
CD
|
C:GLU60
|
3.1
|
37.0
|
1.0
|
|
FE
|
C:FE201
|
3.2
|
38.4
|
1.0
|
|
HE1
|
C:HIS63
|
3.2
|
46.9
|
1.0
|
|
OE1
|
C:GLU60
|
3.5
|
36.9
|
1.0
|
|
OE1
|
C:GLN139
|
3.7
|
36.8
|
1.0
|
|
NE2
|
C:GLN139
|
3.7
|
47.8
|
1.0
|
|
HE2
|
C:TYR31
|
3.7
|
55.5
|
1.0
|
|
HH
|
C:TYR31
|
3.9
|
60.1
|
1.0
|
|
HG
|
C:SER142
|
4.0
|
61.0
|
1.0
|
|
CE1
|
C:HIS63
|
4.0
|
39.2
|
1.0
|
|
CG
|
C:GLU105
|
4.0
|
45.2
|
1.0
|
|
CD
|
C:GLN139
|
4.1
|
43.4
|
1.0
|
|
HA
|
C:GLU105
|
4.2
|
63.2
|
1.0
|
|
HG2
|
C:GLU60
|
4.3
|
47.3
|
1.0
|
|
HG21
|
C:VAL108
|
4.3
|
38.7
|
1.0
|
|
CG
|
C:GLU60
|
4.3
|
39.5
|
1.0
|
|
HG2
|
C:GLU105
|
4.4
|
54.1
|
1.0
|
|
ND1
|
C:HIS63
|
4.4
|
42.2
|
1.0
|
|
HG3
|
C:GLU105
|
4.4
|
54.1
|
1.0
|
|
HE21
|
C:GLN139
|
4.4
|
57.2
|
1.0
|
|
HG11
|
C:VAL108
|
4.4
|
43.7
|
1.0
|
|
HB
|
C:VAL108
|
4.5
|
44.4
|
1.0
|
|
HG3
|
C:GLU60
|
4.6
|
47.3
|
1.0
|
|
CE2
|
C:TYR31
|
4.6
|
46.4
|
1.0
|
|
OH
|
C:TYR31
|
4.7
|
50.2
|
1.0
|
|
OG
|
C:SER142
|
4.8
|
51.0
|
1.0
|
|
HB1
|
C:ALA27
|
4.8
|
50.0
|
1.0
|
|
CB
|
C:GLU105
|
4.9
|
42.8
|
1.0
|
|
HB3
|
C:GLU105
|
4.9
|
51.2
|
1.0
|
|
Iron binding site 9 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 9 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:41.9
occ:1.00
|
OE1
|
D:GLU24
|
1.9
|
42.5
|
1.0
|
|
OE1
|
D:GLU60
|
2.1
|
44.8
|
1.0
|
|
ND1
|
D:HIS63
|
2.2
|
49.9
|
1.0
|
|
CD
|
D:GLU24
|
2.8
|
46.0
|
1.0
|
|
CD
|
D:GLU60
|
3.0
|
50.8
|
1.0
|
|
OE2
|
D:GLU24
|
3.1
|
52.8
|
1.0
|
|
HG11
|
D:VAL108
|
3.1
|
50.3
|
1.0
|
|
CE1
|
D:HIS63
|
3.1
|
50.7
|
1.0
|
|
HE1
|
D:HIS63
|
3.2
|
60.7
|
1.0
|
|
FE
|
D:FE202
|
3.2
|
43.6
|
1.0
|
|
OE2
|
D:GLU60
|
3.3
|
47.0
|
1.0
|
|
HE22
|
D:GLN139
|
3.3
|
50.1
|
1.0
|
|
CG
|
D:HIS63
|
3.3
|
48.5
|
1.0
|
|
HB3
|
D:HIS63
|
3.5
|
66.0
|
1.0
|
|
HB2
|
D:HIS63
|
3.6
|
66.0
|
1.0
|
|
HA
|
D:GLU60
|
3.6
|
59.0
|
1.0
|
|
CB
|
D:HIS63
|
3.7
|
55.1
|
1.0
|
|
NE2
|
D:GLN139
|
3.8
|
41.8
|
1.0
|
|
HE21
|
D:GLN139
|
3.9
|
50.1
|
1.0
|
|
CG1
|
D:VAL108
|
4.0
|
42.0
|
1.0
|
|
HG12
|
D:VAL108
|
4.2
|
50.3
|
1.0
|
|
NE2
|
D:HIS63
|
4.3
|
48.6
|
1.0
|
|
CG
|
D:GLU24
|
4.3
|
44.3
|
1.0
|
|
HB3
|
D:GLU24
|
4.3
|
47.6
|
1.0
|
|
HG13
|
D:VAL108
|
4.3
|
50.3
|
1.0
|
|
CG
|
D:GLU60
|
4.4
|
46.3
|
1.0
|
|
CD2
|
D:HIS63
|
4.4
|
45.1
|
1.0
|
|
CA
|
D:GLU60
|
4.5
|
49.3
|
1.0
|
|
HA
|
D:GLU24
|
4.5
|
50.9
|
1.0
|
|
HG21
|
D:VAL108
|
4.5
|
52.0
|
1.0
|
|
CD
|
D:GLN139
|
4.6
|
43.2
|
1.0
|
|
HB3
|
D:GLU60
|
4.7
|
52.1
|
1.0
|
|
HG3
|
D:GLU24
|
4.7
|
53.0
|
1.0
|
|
CB
|
D:GLU24
|
4.7
|
39.8
|
1.0
|
|
HD1
|
D:TYR135
|
4.7
|
61.7
|
1.0
|
|
HG2
|
D:GLU60
|
4.8
|
55.4
|
1.0
|
|
CB
|
D:GLU60
|
4.8
|
43.6
|
1.0
|
|
HG2
|
D:GLU24
|
4.8
|
53.0
|
1.0
|
|
HD11
|
D:LEU112
|
4.8
|
53.6
|
1.0
|
|
HB3
|
D:ALA27
|
4.9
|
48.5
|
1.0
|
|
OE1
|
D:GLN139
|
5.0
|
57.8
|
1.0
|
|
Iron binding site 10 out
of 12 in 7cpi
Go back to
Iron Binding Sites List in 7cpi
Iron binding site 10 out
of 12 in the His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of His-Mediated Reversible Self-Assembly of Ferritin Nanocage with Zn Binding within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:43.6
occ:1.00
|
OE2
|
D:GLU60
|
1.9
|
47.0
|
1.0
|
|
OE2
|
D:GLU105
|
2.1
|
41.4
|
1.0
|
|
OE1
|
D:GLU105
|
2.5
|
54.2
|
1.0
|
|
HE22
|
D:GLN139
|
2.6
|
50.1
|
1.0
|
|
CD
|
D:GLU105
|
2.6
|
45.2
|
1.0
|
|
CD
|
D:GLU60
|
2.9
|
50.8
|
1.0
|
|
FE
|
D:FE201
|
3.2
|
41.9
|
1.0
|
|
OE1
|
D:GLU60
|
3.4
|
44.8
|
1.0
|
|
NE2
|
D:GLN139
|
3.4
|
41.8
|
1.0
|
|
HE1
|
D:HIS63
|
3.6
|
60.7
|
1.0
|
|
HE2
|
D:TYR31
|
3.8
|
53.5
|
1.0
|
|
OE1
|
D:GLN139
|
3.9
|
57.8
|
1.0
|
|
HG11
|
D:VAL108
|
4.0
|
50.3
|
1.0
|
|
HG21
|
D:VAL108
|
4.0
|
52.0
|
1.0
|
|
HE21
|
D:GLN139
|
4.0
|
50.1
|
1.0
|
|
CD
|
D:GLN139
|
4.1
|
43.2
|
1.0
|
|
CG
|
D:GLU105
|
4.1
|
39.2
|
1.0
|
|
HH
|
D:TYR31
|
4.2
|
50.8
|
1.0
|
|
CG
|
D:GLU60
|
4.2
|
46.3
|
1.0
|
|
HG2
|
D:GLU60
|
4.2
|
55.4
|
1.0
|
|
CE1
|
D:HIS63
|
4.2
|
50.7
|
1.0
|
|
HA
|
D:GLU105
|
4.2
|
63.7
|
1.0
|
|
HG
|
D:SER142
|
4.3
|
61.9
|
1.0
|
|
ND1
|
D:HIS63
|
4.3
|
49.9
|
1.0
|
|
HG2
|
D:GLU105
|
4.5
|
46.9
|
1.0
|
|
HB
|
D:VAL108
|
4.5
|
60.1
|
1.0
|
|
HG3
|
D:GLU60
|
4.5
|
55.4
|
1.0
|
|
HG3
|
D:GLU105
|
4.5
|
46.9
|
1.0
|
|
CE2
|
D:TYR31
|
4.7
|
44.7
|
1.0
|
|
CG1
|
D:VAL108
|
4.7
|
42.0
|
1.0
|
|
HB1
|
D:ALA27
|
4.7
|
48.5
|
1.0
|
|
CG2
|
D:VAL108
|
4.8
|
43.5
|
1.0
|
|
OE1
|
D:GLU24
|
4.9
|
42.5
|
1.0
|
|
HB3
|
D:GLU105
|
4.9
|
54.0
|
1.0
|
|
HG12
|
D:VAL108
|
4.9
|
50.3
|
1.0
|
|
CB
|
D:VAL108
|
4.9
|
50.2
|
1.0
|
|
CB
|
D:GLU105
|
5.0
|
45.1
|
1.0
|
|
OH
|
D:TYR31
|
5.0
|
42.5
|
1.0
|
|
Reference:
C.Gu,
T.Zhang,
C.Lv,
Y.Liu,
Y.Wang,
G.Zhao.
His-Mediated Reversible Self-Assembly of Ferritin Nanocages Through Two Different Switches For Encapsulation of Cargo Molecules. Acs Nano 2020.
ISSN: ESSN 1936-086X
PubMed: 33197176
DOI: 10.1021/ACSNANO.0C06670
Page generated: Thu Aug 8 03:18:17 2024
|
