Iron in PDB 7d0j: Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii

All present enzymatic activity of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii:
1.97.1.12;

The structure of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii also contains other interesting chemical elements:

Magnesium

(Mg)

332 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii (pdb code 7d0j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii, PDB code: 7d0j:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:44.9 occ:1.00 FE1 A:SF4850 0.0 44.9 1.0 S3 A:SF4850 2.2 44.9 1.0 S2 A:SF4850 2.2 44.9 1.0 S4 A:SF4850 2.2 44.9 1.0 SG B:CYS569 2.3 36.7 1.0 FE4 A:SF4850 2.5 44.9 1.0 FE2 A:SF4850 2.6 44.9 1.0 FE3 A:SF4850 2.6 44.9 1.0 CB B:CYS569 3.6 36.7 1.0 S1 A:SF4850 3.7 44.9 1.0 CA B:CYS569 4.0 36.7 1.0 CD1 A:ILE720 4.2 39.7 1.0 CZ3 B:TRP668 4.3 42.0 1.0 N B:CYS569 4.4 36.7 1.0 SG B:CYS560 4.6 45.4 1.0 SG A:CYS584 4.6 44.9 1.0 SG A:CYS575 4.7 45.6 1.0 CB B:CYS560 4.7 45.4 1.0 C B:THR568 4.9 38.1 1.0 CE3 B:TRP668 4.9 42.0 1.0 O B:THR568 5.0 38.1 1.0

Iron binding site 2 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:44.9 occ:1.00 FE2 A:SF4850 0.0 44.9 1.0 S4 A:SF4850 2.2 44.9 1.0 S3 A:SF4850 2.2 44.9 1.0 S1 A:SF4850 2.2 44.9 1.0 SG A:CYS584 2.2 44.9 1.0 FE3 A:SF4850 2.5 44.9 1.0 FE1 A:SF4850 2.6 44.9 1.0 FE4 A:SF4850 2.6 44.9 1.0 CB A:CYS584 3.4 44.9 1.0 S2 A:SF4850 3.7 44.9 1.0 CA A:CYS584 3.9 44.9 1.0 N A:CYS584 4.3 44.9 1.0 CB A:CYS575 4.4 45.6 1.0 SG A:CYS575 4.6 45.6 1.0 CD1 B:ILE703 4.6 38.0 1.0 SG B:CYS569 4.6 36.7 1.0 SG B:CYS560 4.7 45.4 1.0 CE3 B:TRP668 4.7 42.0 1.0 CZ3 B:TRP668 4.9 42.0 1.0

Iron binding site 3 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:44.9 occ:1.00 FE3 A:SF4850 0.0 44.9 1.0 S4 A:SF4850 2.2 44.9 1.0 S1 A:SF4850 2.2 44.9 1.0 S2 A:SF4850 2.2 44.9 1.0 SG A:CYS575 2.3 45.6 1.0 FE2 A:SF4850 2.5 44.9 1.0 FE4 A:SF4850 2.6 44.9 1.0 FE1 A:SF4850 2.6 44.9 1.0 CB A:CYS575 3.0 45.6 1.0 S3 A:SF4850 3.7 44.9 1.0 CA A:CYS575 4.5 45.6 1.0 SG A:CYS584 4.5 44.9 1.0 C B:GLY562 4.6 44.1 1.0 SG B:CYS569 4.6 36.7 1.0 SG B:CYS560 4.7 45.4 1.0 CD1 A:ILE720 4.7 39.7 1.0 N B:PRO563 4.7 40.6 1.0 CA B:GLY562 4.7 44.1 1.0 N A:GLY577 4.8 41.6 1.0 C A:GLY577 4.9 41.6 1.0 CA A:GLY577 4.9 41.6 1.0 O A:GLY577 4.9 41.6 1.0 N A:CYS575 4.9 45.6 1.0 O B:GLY562 4.9 44.1 1.0

Iron binding site 4 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:44.9 occ:1.00 FE4 A:SF4850 0.0 44.9 1.0 S2 A:SF4850 2.2 44.9 1.0 S3 A:SF4850 2.2 44.9 1.0 S1 A:SF4850 2.2 44.9 1.0 SG B:CYS560 2.3 45.4 1.0 FE1 A:SF4850 2.5 44.9 1.0 FE3 A:SF4850 2.6 44.9 1.0 FE2 A:SF4850 2.6 44.9 1.0 CB B:CYS560 3.2 45.4 1.0 S4 A:SF4850 3.7 44.9 1.0 N B:GLY562 4.2 44.1 1.0 CA B:GLY562 4.3 44.1 1.0 SG B:CYS569 4.5 36.7 1.0 SG A:CYS584 4.6 44.9 1.0 CA B:CYS560 4.6 45.4 1.0 SG A:CYS575 4.7 45.6 1.0 C B:GLY562 4.7 44.1 1.0 N A:PRO578 4.8 37.1 1.0 CD A:PRO578 4.8 37.1 1.0 CB A:PRO578 4.8 37.1 1.0 O B:GLY562 4.9 44.1 1.0 O B:THR568 4.9 38.1 1.0 C A:GLY577 5.0 41.6 1.0

Iron binding site 5 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:48.3 occ:1.00 FE1 C:SF4101 0.0 48.3 1.0 S4 C:SF4101 2.2 48.3 1.0 S3 C:SF4101 2.2 48.3 1.0 S2 C:SF4101 2.2 48.3 1.0 SG C:CYS51 2.2 40.1 1.0 FE4 C:SF4101 2.6 48.3 1.0 FE2 C:SF4101 2.6 48.3 1.0 FE3 C:SF4101 2.6 48.3 1.0 N C:CYS51 3.6 40.1 1.0 S1 C:SF4101 3.7 48.3 1.0 N C:LYS52 3.7 41.2 1.0 CB C:CYS51 3.8 40.1 1.0 CD C:PRO22 4.1 47.1 1.0 CA C:CYS51 4.1 40.1 1.0 N C:ARG53 4.2 41.6 1.0 C C:CYS51 4.2 40.1 1.0 C C:GLY50 4.5 42.5 1.0 N C:GLY50 4.5 42.5 1.0 SG C:CYS21 4.6 43.6 1.0 SG C:CYS48 4.6 48.6 1.0 CA C:LYS52 4.6 41.2 1.0 SG C:CYS54 4.6 43.5 1.0 CG C:PRO22 4.7 47.1 1.0 CA C:GLY50 4.8 42.5 1.0 N C:CYS54 4.9 43.5 1.0 C C:LYS52 5.0 41.2 1.0

Iron binding site 6 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:48.3 occ:1.00 FE2 C:SF4101 0.0 48.3 1.0 S4 C:SF4101 2.1 48.3 1.0 S3 C:SF4101 2.2 48.3 1.0 S1 C:SF4101 2.2 48.3 1.0 SG C:CYS21 2.2 43.6 1.0 FE1 C:SF4101 2.6 48.3 1.0 FE3 C:SF4101 2.6 48.3 1.0 FE4 C:SF4101 2.6 48.3 1.0 CB C:CYS21 3.4 43.6 1.0 S2 C:SF4101 3.7 48.3 1.0 CG2 C:VAL25 3.7 50.6 1.0 CA C:CYS21 3.8 43.6 1.0 CD C:PRO22 4.2 47.1 1.0 C C:CYS21 4.6 43.6 1.0 SG C:CYS51 4.6 40.1 1.0 SG C:CYS54 4.6 43.5 1.0 N C:PRO22 4.6 47.1 1.0 SG C:CYS48 4.6 48.6 1.0 CB C:CYS54 4.8 43.5 1.0 CD1 C:LEU26 5.0 48.1 1.0 N C:CYS21 5.0 43.6 1.0

Iron binding site 7 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:48.3 occ:1.00 FE3 C:SF4101 0.0 48.3 1.0 S1 C:SF4101 2.2 48.3 1.0 S4 C:SF4101 2.2 48.3 1.0 S2 C:SF4101 2.2 48.3 1.0 SG C:CYS54 2.2 43.5 1.0 FE2 C:SF4101 2.6 48.3 1.0 FE4 C:SF4101 2.6 48.3 1.0 FE1 C:SF4101 2.6 48.3 1.0 CB C:CYS54 3.2 43.5 1.0 S3 C:SF4101 3.7 48.3 1.0 N C:CYS54 3.7 43.5 1.0 CG2 C:VAL67 4.1 46.7 1.0 CA C:CYS54 4.1 43.5 1.0 N C:LYS52 4.4 41.2 1.0 N C:ARG53 4.4 41.6 1.0 CA C:LYS52 4.5 41.2 1.0 SG C:CYS21 4.6 43.6 1.0 SG C:CYS48 4.6 48.6 1.0 SG C:CYS51 4.6 40.1 1.0 C C:ARG53 4.9 41.6 1.0 C C:LYS52 4.9 41.2 1.0

Iron binding site 8 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:48.3 occ:1.00 FE4 C:SF4101 0.0 48.3 1.0 S3 C:SF4101 2.2 48.3 1.0 S2 C:SF4101 2.2 48.3 1.0 S1 C:SF4101 2.2 48.3 1.0 SG C:CYS48 2.2 48.6 1.0 FE1 C:SF4101 2.6 48.3 1.0 FE3 C:SF4101 2.6 48.3 1.0 FE2 C:SF4101 2.6 48.3 1.0 CB C:CYS48 3.7 48.6 1.0 S4 C:SF4101 3.7 48.3 1.0 N C:GLY50 4.0 42.5 1.0 CA C:CYS48 4.2 48.6 1.0 CG2 C:VAL25 4.3 50.6 1.0 CA C:GLY50 4.4 42.5 1.0 N C:VAL49 4.4 44.0 1.0 SG C:CYS51 4.6 40.1 1.0 SG C:CYS21 4.6 43.6 1.0 SG C:CYS54 4.6 43.5 1.0 N C:CYS51 4.6 40.1 1.0 C C:CYS48 4.7 48.6 1.0 CG2 C:VAL67 4.8 46.7 1.0 CG2 C:VAL5 4.8 47.9 1.0 C C:GLY50 4.9 42.5 1.0

Iron binding site 9 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:54.3 occ:1.00 FE1 C:SF4102 0.0 54.3 1.0 S4 C:SF4102 2.2 54.3 1.0 S2 C:SF4102 2.2 54.3 1.0 S3 C:SF4102 2.2 54.3 1.0 SG C:CYS58 2.2 45.0 1.0 FE3 C:SF4102 2.5 54.3 1.0 FE2 C:SF4102 2.6 54.3 1.0 FE4 C:SF4102 2.6 54.3 1.0 CB C:CYS58 3.5 45.0 1.0 S1 C:SF4102 3.7 54.3 1.0 CA C:CYS58 3.8 45.0 1.0 CD C:PRO59 4.0 47.0 1.0 CB C:SER64 4.4 47.0 1.0 SG C:CYS14 4.5 45.0 1.0 N C:PRO59 4.6 47.0 1.0 SG C:CYS11 4.6 46.0 1.0 SG C:CYS17 4.6 47.3 1.0 C C:CYS58 4.6 45.0 1.0 N C:CYS58 4.9 45.0 1.0 OG C:SER64 4.9 47.0 1.0 CG1 C:VAL65 5.0 42.7 1.0 CB C:CYS17 5.0 47.3 1.0

Iron binding site 10 out of 12 in the Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Photosystem I-Lhci-Lhcii of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:54.3 occ:1.00 FE2 C:SF4102 0.0 54.3 1.0 S3 C:SF4102 2.2 54.3 1.0 S4 C:SF4102 2.2 54.3 1.0 S1 C:SF4102 2.2 54.3 1.0 SG C:CYS17 2.2 47.3 1.0 FE4 C:SF4102 2.5 54.3 1.0 FE3 C:SF4102 2.6 54.3 1.0 FE1 C:SF4102 2.6 54.3 1.0 CB C:CYS17 3.2 47.3 1.0 S2 C:SF4102 3.7 54.3 1.0 N C:CYS17 3.8 47.3 1.0 CA C:CYS17 4.1 47.3 1.0 CB C:ALA40 4.4 53.7 1.0 SG C:CYS11 4.5 46.0 1.0 N C:GLN16 4.6 47.2 1.0 SG C:CYS14 4.6 45.0 1.0 SG C:CYS58 4.6 45.0 1.0 N C:THR15 4.8 43.3 1.0 C C:GLN16 4.9 47.2 1.0

Z.Huang, L.Shen, W.Wang, Z.Mao, X.Yi, T.Kuang, J.R.Shen, X.Zhang, G.Han. Structure of Photosystem I-Lhci-Lhcii From the Green Alga Chlamydomonas Reinhardtii in State 2. Nat Commun V. 12 1100 2021.
ISSN: ESSN 2041-1723
PubMed: 33597543
DOI: 10.1038/S41467-021-21362-6