Iron in PDB 7d5i: Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form.

All present enzymatic activity of Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form.:
3.1.3.1;

The binding sites of Iron atom in the Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form. (pdb code 7d5i). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form., PDB code: 7d5i:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in the Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe801 b:45.4 occ:1.00 FE A:HEB801 0.0 45.4 1.0 NC A:HEB801 1.9 45.4 1.0 NB A:HEB801 1.9 45.4 1.0 ND A:HEB801 1.9 45.4 1.0 NA A:HEB801 1.9 45.4 1.0 OE1 A:GLU398 2.5 44.1 1.0 CD A:GLU398 2.9 44.1 1.0 C4C A:HEB801 3.0 45.4 1.0 C4A A:HEB801 3.0 45.4 1.0 C1B A:HEB801 3.0 45.4 1.0 C4D A:HEB801 3.0 45.4 1.0 C1D A:HEB801 3.0 45.4 1.0 C4B A:HEB801 3.0 45.4 1.0 C1C A:HEB801 3.1 45.4 1.0 C1A A:HEB801 3.1 45.4 1.0 CG A:GLU398 3.2 44.1 1.0 CHB A:HEB801 3.6 45.4 1.0 CHD A:HEB801 3.7 45.4 1.0 OE2 A:GLU398 3.7 44.1 1.0 CHA A:HEB801 3.8 45.4 1.0 CHC A:HEB801 3.8 45.4 1.0 NH2 A:ARG401 4.1 45.4 1.0 CB A:GLU398 4.1 44.1 1.0 C3C A:HEB801 4.3 45.4 1.0 C2D A:HEB801 4.3 45.4 1.0 C3D A:HEB801 4.3 45.4 1.0 C3A A:HEB801 4.3 45.4 1.0 C2B A:HEB801 4.3 45.4 1.0 C3B A:HEB801 4.3 45.4 1.0 C2C A:HEB801 4.3 45.4 1.0 CE2 A:PHE11 4.3 45.4 1.0 C2A A:HEB801 4.3 45.4 1.0 CD2 A:PHE11 4.6 45.4 1.0 OD1 A:ASN147 5.0 46.5 1.0

Iron binding site 2 out of 3 in the Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe802 b:46.5 occ:1.00 FE A:HEB802 0.0 46.5 1.0 NC A:HEB802 1.9 46.5 1.0 NB A:HEB802 1.9 46.5 1.0 ND A:HEB802 1.9 46.5 1.0 NA A:HEB802 1.9 46.5 1.0 SD A:MET346 2.7 47.1 1.0 C4D A:HEB802 2.9 46.5 1.0 C4B A:HEB802 2.9 46.5 1.0 C1C A:HEB802 2.9 46.5 1.0 C1A A:HEB802 3.0 46.5 1.0 C4C A:HEB802 3.0 46.5 1.0 C4A A:HEB802 3.0 46.5 1.0 NE2 A:HIS185 3.0 43.4 1.0 C1B A:HEB802 3.0 46.5 1.0 C1D A:HEB802 3.1 46.5 1.0 CG A:MET346 3.1 47.1 1.0 CE A:MET346 3.2 47.1 1.0 CHA A:HEB802 3.5 46.5 1.0 CHC A:HEB802 3.5 46.5 1.0 CD2 A:HIS185 3.7 43.4 1.0 CHD A:HEB802 3.7 46.5 1.0 CHB A:HEB802 3.7 46.5 1.0 CE1 A:HIS185 4.1 43.4 1.0 C2C A:HEB802 4.2 46.5 1.0 C3B A:HEB802 4.2 46.5 1.0 C3D A:HEB802 4.2 46.5 1.0 C3C A:HEB802 4.2 46.5 1.0 C2A A:HEB802 4.2 46.5 1.0 C3A A:HEB802 4.3 46.5 1.0 C2D A:HEB802 4.3 46.5 1.0 C2B A:HEB802 4.3 46.5 1.0 CB A:MET346 4.6 47.1 1.0 CA A:GLY393 4.7 43.7 1.0 CG A:HIS185 5.0 43.4 1.0

Iron binding site 3 out of 3 in the Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe803 b:47.5 occ:1.00 FE A:HDD803 0.0 47.5 1.0 ND A:HDD803 1.9 47.5 1.0 NC A:HDD803 2.1 47.5 1.0 NA A:HDD803 2.1 47.5 1.0 NB A:HDD803 2.1 47.5 1.0 NE2 A:HIS18 2.4 42.5 1.0 C1D A:HDD803 2.8 47.5 1.0 C4D A:HDD803 2.8 47.5 1.0 C1A A:HDD803 3.0 47.5 1.0 C4C A:HDD803 3.1 47.5 1.0 C4B A:HDD803 3.1 47.5 1.0 C1C A:HDD803 3.1 47.5 1.0 C4A A:HDD803 3.1 47.5 1.0 C1B A:HDD803 3.1 47.5 1.0 CHD A:HDD803 3.2 47.5 1.0 CHA A:HDD803 3.3 47.5 1.0 CE1 A:HIS18 3.3 42.5 1.0 CHC A:HDD803 3.3 47.5 1.0 CD2 A:HIS18 3.4 42.5 1.0 CHB A:HDD803 3.4 47.5 1.0 C3D A:HDD803 4.1 47.5 1.0 C2D A:HDD803 4.1 47.5 1.0 C3C A:HDD803 4.4 47.5 1.0 C3B A:HDD803 4.4 47.5 1.0 C2A A:HDD803 4.4 47.5 1.0 C2C A:HDD803 4.4 47.5 1.0 C3A A:HDD803 4.4 47.5 1.0 ND1 A:HIS18 4.4 42.5 1.0 C2B A:HDD803 4.4 47.5 1.0 CG A:HIS18 4.5 42.5 1.0 CG2 A:VAL22 4.5 43.5 1.0 CMD A:HDD803 4.9 47.5 1.0 CAD A:HDD803 4.9 47.5 1.0 CA A:GLY69 4.9 45.6 1.0 CZ A:PHE103 4.9 52.1 1.0

W.Wang, H.Gong, Y.Gao, X.Zhou, Z.Rao. Structure of Mycobacterium Smegmatis Bd Complex in the Apo-Form. To Be Published.