Iron in PDB 7de2: Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi

The structure of Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi, PDB code: 7de2 was solved by R.Zhai, T.Mori, I.Abe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.08 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	157.286, 48.337, 79.638, 90, 101.04, 90
R / Rfree (%)	17.2 / 19.3

The binding sites of Iron atom in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi (pdb code 7de2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi, PDB code: 7de2:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe303 b:14.9 occ:1.00 O1 A:AKG301 2.0 17.5 1.0 O5 A:AKG301 2.0 15.3 1.0 NE2 A:HIS250 2.0 13.4 1.0 NE2 A:HIS135 2.1 14.0 1.0 O A:HOH462 2.1 20.4 1.0 OD1 A:ASP137 2.2 17.5 1.0 C1 A:AKG301 2.7 22.7 1.0 C2 A:AKG301 2.7 22.4 1.0 CD2 A:HIS250 3.0 14.3 1.0 CE1 A:HIS250 3.0 14.0 1.0 CG A:ASP137 3.0 21.4 1.0 CD2 A:HIS135 3.0 13.2 1.0 CE1 A:HIS135 3.1 16.1 1.0 OD2 A:ASP137 3.2 20.8 1.0 O2 A:AKG301 3.9 19.3 1.0 ND1 A:HIS250 4.1 16.0 1.0 CG A:HIS250 4.1 15.1 1.0 ND1 A:HIS135 4.2 14.1 1.0 CG A:HIS135 4.2 12.5 1.0 CAF A:H3X302 4.2 18.3 1.0 C3 A:AKG301 4.2 20.9 1.0 OG A:SER167 4.2 18.6 1.0 CB A:ASP137 4.4 15.9 1.0 NH2 A:ARG271 4.5 19.2 1.0 C4 A:AKG301 4.8 17.3 1.0 N A:ASP137 4.9 16.9 1.0 CBB A:H3X302 4.9 22.8 1.0 CA A:ASP137 4.9 18.3 1.0

Iron binding site 2 out of 2 in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:12.0 occ:1.00 O1 B:AKG301 2.0 15.2 1.0 O5 B:AKG301 2.1 16.7 1.0 NE2 B:HIS250 2.1 11.5 1.0 NE2 B:HIS135 2.1 14.6 1.0 O B:HOH504 2.2 15.4 1.0 OD1 B:ASP137 2.2 17.9 1.0 C1 B:AKG301 2.7 21.3 1.0 C2 B:AKG301 2.7 16.1 1.0 CG B:ASP137 3.0 20.9 1.0 CE1 B:HIS250 3.1 13.3 1.0 CD2 B:HIS135 3.1 14.4 1.0 CD2 B:HIS250 3.1 10.3 1.0 CE1 B:HIS135 3.1 14.9 1.0 OD2 B:ASP137 3.2 21.7 1.0 O2 B:AKG301 3.9 17.3 1.0 ND1 B:HIS250 4.2 11.7 1.0 C3 B:AKG301 4.2 14.3 1.0 CG B:HIS135 4.2 13.0 1.0 ND1 B:HIS135 4.2 14.2 1.0 CG B:HIS250 4.2 12.2 1.0 OG B:SER167 4.2 16.2 1.0 CB B:ASP137 4.4 14.9 1.0 NH1 B:ARG271 4.5 14.5 1.0 NH2 B:ARG118 4.7 22.4 1.0 C4 B:AKG301 4.8 15.8 1.0 N B:ASP137 4.8 14.1 1.0 CA B:ASP137 4.9 14.3 1.0

R.Zhai, T.Mori, I.Abe. Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi To Be Published.