Iron in PDB 7de5: Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution.

Enzymatic activity of Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution.

All present enzymatic activity of Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution.:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution., PDB code: 7de5 was solved by P.K.Singh, V.Viswanathan, P.Sharma, C.Rani, N.Ahmad, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.25 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.910, 78.980, 67.820, 90.00, 92.96, 90.00
R / Rfree (%) 18.7 / 22.6

Other elements in 7de5:

The structure of Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution. also contains other interesting chemical elements:

Iodine (I) 48 atoms
Calcium (Ca) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution. (pdb code 7de5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution., PDB code: 7de5:

Iron binding site 1 out of 1 in 7de5

Go back to Iron Binding Sites List in 7de5
Iron binding site 1 out of 1 in the Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:11.8
occ:1.00
FE A:HEM601 0.0 11.8 1.0
ND A:HEM601 1.9 10.1 1.0
NA A:HEM601 2.0 10.7 1.0
NC A:HEM601 2.1 9.6 1.0
NB A:HEM601 2.1 10.2 1.0
NE2 A:HIS351 2.3 12.1 1.0
O A:HOH856 2.7 17.5 1.0
C4D A:HEM601 3.0 10.4 1.0
C1D A:HEM601 3.0 10.4 1.0
C4C A:HEM601 3.0 10.0 1.0
C1A A:HEM601 3.0 11.0 1.0
C4B A:HEM601 3.1 10.5 1.0
C1C A:HEM601 3.1 10.3 1.0
C4A A:HEM601 3.1 11.2 1.0
C1B A:HEM601 3.1 11.6 1.0
CD2 A:HIS351 3.1 11.4 1.0
CE1 A:HIS351 3.4 11.0 1.0
CHD A:HEM601 3.4 9.8 1.0
CHA A:HEM601 3.4 10.6 1.0
CHC A:HEM601 3.4 9.1 1.0
CHB A:HEM601 3.5 11.0 1.0
C3D A:HEM601 4.2 10.0 1.0
C2D A:HEM601 4.2 9.5 1.0
C3C A:HEM601 4.3 9.6 1.0
C2C A:HEM601 4.3 9.3 1.0
C2A A:HEM601 4.3 11.6 1.0
C3A A:HEM601 4.3 11.6 1.0
CG A:HIS351 4.3 10.3 1.0
C3B A:HEM601 4.4 10.3 1.0
C2B A:HEM601 4.4 10.6 1.0
ND1 A:HIS351 4.4 10.8 1.0
NE2 A:GLN105 4.6 10.0 1.0
CD2 A:LEU433 4.7 10.0 1.0
I A:IOD643 4.9 20.2 0.4

Reference:

V.Viswanathan, C.Rani, N.Ahmad, P.Singh, P.Sharma, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of Yak Lactoperoxidase at 1.55 A Resolution. To Be Published.
Page generated: Sun Dec 13 18:42:18 2020

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