Iron in PDB 7dqo: Marsupenaeus Japonicus Ferritin Mutant-D132R

All present enzymatic activity of Marsupenaeus Japonicus Ferritin Mutant-D132R:
1.16.3.1;

The structure of Marsupenaeus Japonicus Ferritin Mutant-D132R, PDB code: 7dqo was solved by X.Tan, Y.Liu, J.Zang, T.Zhang, G.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.98 / 1.70
Space group	P 4
Cell size a, b, c (Å), α, β, γ (°)	125.448, 125.448, 176.178, 90, 90, 90
R / Rfree (%)	24 / 27.6

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Marsupenaeus Japonicus Ferritin Mutant-D132R (pdb code 7dqo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Marsupenaeus Japonicus Ferritin Mutant-D132R, PDB code: 7dqo:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:44.4 occ:1.00 OE1 A:GLU24 2.3 21.1 1.0 OE1 A:GLU59 2.4 17.1 1.0 CD A:GLU59 2.9 18.4 1.0 OE2 A:GLU59 3.0 22.8 1.0 CD A:GLU24 3.3 16.8 1.0 CD2 A:HIS62 3.3 23.1 1.0 CG A:HIS62 3.6 15.4 1.0 CB A:HIS62 3.6 12.3 1.0 O A:HOH319 3.6 20.3 1.0 OE2 A:GLU24 3.8 18.2 1.0 O A:HOH359 4.0 15.3 1.0 O A:HOH367 4.0 15.9 1.0 OE1 A:GLN138 4.2 14.6 1.0 CG A:GLU59 4.3 13.2 1.0 NE2 A:HIS62 4.3 23.4 1.0 CA A:GLU59 4.3 12.7 1.0 CG1 A:VAL107 4.3 12.8 1.0 CG A:GLU24 4.4 13.5 1.0 CB A:GLU24 4.6 10.6 1.0 CB A:GLU59 4.6 12.2 1.0 ND1 A:HIS62 4.7 24.5 1.0 O A:GLU59 4.9 10.2 1.0

Iron binding site 2 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:93.6 occ:1.00 OE2 B:GLU24 2.9 36.3 1.0 OE1 B:GLU24 3.0 36.8 1.0 CD B:GLU24 3.3 35.2 1.0 OE1 B:GLN138 3.4 30.9 1.0 CD2 B:HIS62 3.4 35.1 1.0 CG B:HIS62 3.7 32.4 1.0 OE1 B:GLU59 3.7 33.2 1.0 CB B:HIS62 3.8 29.9 1.0 OE2 B:GLU59 4.0 41.4 1.0 CD1 B:TYR134 4.0 35.5 1.0 CG1 B:VAL107 4.2 33.6 1.0 CD B:GLU59 4.2 37.4 1.0 CD B:GLN138 4.3 36.4 1.0 CD1 B:LEU111 4.3 32.6 1.0 NE2 B:HIS62 4.4 38.8 1.0 NE2 B:GLN138 4.5 36.2 1.0 CE1 B:TYR134 4.6 33.7 1.0 CG B:GLU24 4.7 31.8 1.0 ND1 B:HIS62 4.8 30.4 1.0

Iron binding site 3 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe201 b:45.1 occ:1.00 ND1 C:HIS62 2.2 25.1 1.0 OE1 C:GLU24 2.9 20.2 1.0 O C:HOH346 3.0 16.0 1.0 CG C:HIS62 3.0 18.4 1.0 CE1 C:HIS62 3.2 24.2 1.0 CB C:HIS62 3.3 11.9 1.0 CD C:GLU24 3.5 17.0 1.0 OE1 C:GLU59 3.5 17.7 1.0 OE2 C:GLU24 3.6 18.4 1.0 OE1 C:GLN138 3.8 14.4 1.0 OE2 C:GLU59 4.0 23.1 1.0 CD C:GLU59 4.0 18.5 1.0 CD1 C:TYR134 4.2 14.9 1.0 CD2 C:HIS62 4.2 17.7 1.0 NE2 C:HIS62 4.2 22.4 1.0 O C:HOH406 4.3 20.8 1.0 CE1 C:TYR134 4.5 12.1 1.0 CG C:GLU24 4.6 13.8 1.0 CG1 C:VAL107 4.7 12.1 1.0 O C:HOH306 4.8 16.4 1.0 CA C:HIS62 4.8 11.8 1.0 CD C:GLN138 4.9 13.7 1.0

Iron binding site 4 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe201 b:55.4 occ:1.00 OE1 D:GLU59 1.8 34.5 1.0 CD D:GLU59 2.3 34.8 1.0 OE2 D:GLU59 2.4 39.3 1.0 OE2 D:GLU24 2.6 38.5 1.0 CD D:GLU24 3.5 33.3 1.0 CG D:GLU59 3.7 28.7 1.0 CA D:GLU59 4.0 30.4 1.0 OE1 D:GLU24 4.1 34.6 1.0 CB D:GLU59 4.1 26.1 1.0 CB D:HIS62 4.2 30.0 1.0 CG1 D:VAL107 4.4 25.6 1.0 CB D:GLU24 4.5 27.8 1.0 OE1 D:GLN138 4.5 27.0 1.0 CG D:HIS62 4.6 30.5 1.0 CG D:GLU24 4.6 32.0 1.0 O D:GLU59 4.7 28.0 1.0 CA D:GLU24 4.7 27.9 1.0 N D:GLU59 4.9 29.2 1.0 C D:GLU59 4.9 29.3 1.0 O D:GLU58 4.9 29.9 1.0

Iron binding site 5 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe201 b:40.0 occ:1.00 OE1 E:GLU24 2.2 25.9 1.0 OE1 E:GLU59 2.6 24.8 1.0 CD2 E:HIS62 2.8 28.9 1.0 CD E:GLU59 3.0 25.1 1.0 OE2 E:GLU59 3.0 32.3 1.0 CD E:GLU24 3.3 26.4 1.0 CG E:HIS62 3.5 27.1 1.0 CB E:HIS62 3.6 22.1 1.0 O E:HOH304 3.7 24.2 1.0 OE2 E:GLU24 3.8 29.6 1.0 NE2 E:HIS62 3.9 30.8 1.0 OE1 E:GLN138 4.2 24.4 1.0 CG E:GLU59 4.2 19.4 1.0 CA E:GLU59 4.2 20.4 1.0 CG1 E:VAL107 4.4 21.8 1.0 CG E:GLU24 4.5 23.6 1.0 CB E:GLU59 4.5 20.1 1.0 ND1 E:HIS62 4.7 28.0 1.0 CB E:GLU24 4.9 21.2 1.0 O E:GLU59 4.9 19.0 1.0 CE1 E:HIS62 4.9 26.4 1.0

Iron binding site 6 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe201 b:54.7 occ:1.00 OE1 F:GLU24 2.5 26.8 1.0 O F:HOH334 2.9 18.9 1.0 OE2 F:GLU24 3.0 22.6 1.0 CD F:GLU24 3.1 21.1 1.0 OE1 F:GLN138 3.3 18.1 1.0 CD2 F:HIS62 3.4 29.4 1.0 OE1 F:GLU59 3.5 20.7 1.0 CG F:HIS62 3.8 23.2 1.0 CG1 F:VAL107 3.9 13.6 1.0 NE2 F:HIS62 4.1 31.1 1.0 CB F:HIS62 4.1 18.7 1.0 CD1 F:TYR134 4.1 22.5 1.0 OE2 F:GLU59 4.2 30.4 1.0 CD F:GLU59 4.3 21.9 1.0 CD F:GLN138 4.3 16.3 1.0 CD1 F:LEU111 4.4 13.7 1.0 O F:HOH343 4.4 18.7 1.0 CG F:GLU24 4.5 17.7 1.0 CE1 F:TYR134 4.6 21.1 1.0 ND1 F:HIS62 4.6 26.3 1.0 NE2 F:GLN138 4.7 15.4 1.0 CE1 F:HIS62 4.7 26.1 1.0 CD2 F:LEU111 4.9 17.8 1.0

Iron binding site 7 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe201 b:57.2 occ:1.00 OE1 G:GLU24 2.3 25.7 1.0 CD2 G:HIS62 3.0 26.8 1.0 CD G:GLU24 3.1 23.2 1.0 OE1 G:GLU59 3.2 23.1 1.0 OE2 G:GLU24 3.3 23.8 1.0 CG G:HIS62 3.4 22.6 1.0 CB G:HIS62 3.4 15.7 1.0 O G:HOH342 3.7 18.8 1.0 CD G:GLU59 3.9 21.9 1.0 OE1 G:GLN138 3.9 16.5 1.0 OE2 G:GLU59 4.0 28.7 1.0 O G:HOH335 4.0 22.5 1.0 NE2 G:HIS62 4.1 25.2 1.0 CG1 G:VAL107 4.4 14.5 1.0 CG G:GLU24 4.4 17.1 1.0 CD1 G:TYR134 4.5 19.8 1.0 ND1 G:HIS62 4.5 20.6 1.0 O G:HOH325 4.5 19.6 1.0 CE1 G:TYR134 4.7 20.3 1.0 CE1 G:HIS62 4.8 21.6 1.0 CD G:GLN138 4.9 15.2 1.0 CB G:GLU24 4.9 17.5 1.0 CA G:GLU59 4.9 16.6 1.0 CA G:HIS62 4.9 15.3 1.0

Iron binding site 8 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe201 b:77.3 occ:1.00 OE1 H:GLU59 2.0 28.5 1.0 OE2 H:GLU59 2.3 30.4 1.0 CD H:GLU59 2.4 28.5 1.0 ND1 H:HIS62 2.9 32.4 1.0 OE1 H:GLU24 3.1 30.8 1.0 O H:HOH306 3.6 27.0 1.0 CE1 H:HIS62 3.8 34.3 1.0 CG H:HIS62 3.8 24.5 1.0 CG H:GLU59 3.9 23.7 1.0 OE1 H:GLN138 3.9 29.4 1.0 CB H:HIS62 4.0 23.5 1.0 CD H:GLU24 4.0 28.0 1.0 CA H:GLU59 4.2 20.6 1.0 OE2 H:GLU24 4.4 30.8 1.0 CB H:GLU59 4.4 19.6 1.0 CG1 H:VAL107 4.4 23.7 1.0 CD H:GLN138 4.8 27.2 1.0 NE2 H:GLN138 4.9 23.4 1.0 N H:GLU59 4.9 20.4 1.0 NE2 H:HIS62 4.9 32.6 1.0 CD2 H:HIS62 5.0 28.4 1.0

Iron binding site 9 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe201 b:56.0 occ:1.00 OE1 I:GLU24 2.3 19.6 1.0 CD I:GLU24 3.0 18.1 1.0 OE1 I:GLU59 3.0 16.8 1.0 OE2 I:GLU24 3.2 19.7 1.0 O I:HOH1049 3.3 14.1 1.0 OE2 I:GLU59 3.5 25.0 1.0 CB I:HIS62 3.5 12.5 1.0 CD I:GLU59 3.6 17.1 1.0 CG I:HIS62 3.7 14.8 1.0 CD2 I:HIS62 3.9 15.8 1.0 OE1 I:GLN138 4.1 11.8 1.0 CG1 I:VAL107 4.2 9.3 1.0 O I:HOH1021 4.2 20.0 1.0 CG I:GLU24 4.3 12.7 1.0 O I:HOH1047 4.3 12.2 1.0 ND1 I:HIS62 4.4 18.6 1.0 CD1 I:TYR134 4.4 14.2 1.0 NE2 I:HIS62 4.7 18.9 1.0 CE1 I:TYR134 4.7 12.8 1.0 CB I:GLU24 4.9 11.7 1.0 CD I:GLN138 4.9 10.1 1.0 CA I:GLU59 5.0 13.1 1.0 CE1 I:HIS62 5.0 20.0 1.0 CG I:GLU59 5.0 11.8 1.0

Iron binding site 10 out of 12 in the Marsupenaeus Japonicus Ferritin Mutant-D132R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Marsupenaeus Japonicus Ferritin Mutant-D132R within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe201 b:65.8 occ:1.00 OE1 J:GLU59 2.7 37.1 1.0 CD2 J:HIS62 2.8 36.4 1.0 OE1 J:GLU24 2.9 35.9 1.0 OE2 J:GLU59 3.0 39.6 1.0 CD J:GLU59 3.1 32.1 1.0 CG J:HIS62 3.5 35.7 1.0 CD J:GLU24 3.6 33.5 1.0 CB J:HIS62 3.8 29.2 1.0 NE2 J:HIS62 3.9 39.2 1.0 OE1 J:GLN138 3.9 37.0 1.0 OE2 J:GLU24 3.9 37.8 1.0 CG1 J:VAL107 4.2 35.7 1.0 CG J:GLU59 4.5 27.8 1.0 CA J:GLU59 4.5 30.3 1.0 ND1 J:HIS62 4.8 38.2 1.0 CG J:GLU24 4.8 31.3 1.0 CD J:GLN138 4.8 32.5 1.0 CB J:GLU24 4.9 28.2 1.0 CB J:GLU59 4.9 28.9 1.0 NE2 J:GLN138 4.9 32.8 1.0 CE1 J:HIS62 4.9 39.8 1.0

X.Tan, Y.Liu, J.Zang, T.Zhang, G.Zhao. Hyperthermostability of Prawn Ferritin Nanocage Facilitates Its Application As A Robust Nanovehicle For Nutraceuticals. Int.J.Biol.Macromol. V. 191 152 2021.
ISSN: ISSN 0141-8130
DOI: 10.1016/J.IJBIOMAC.2021.09.067