Iron in PDB 7dr1: Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa

All present enzymatic activity of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa:
1.97.1.12;

The structure of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa also contains other interesting chemical elements:

Magnesium

(Mg)

81 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa (pdb code 7dr1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa, PDB code: 7dr1:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe845 b:26.8 occ:1.00 FE1 A:SF4845 0.0 26.8 1.0 S4 A:SF4845 2.3 26.8 1.0 S2 A:SF4845 2.3 26.8 1.0 S3 A:SF4845 2.3 26.8 1.0 SG B:CYS571 2.3 21.1 1.0 FE2 A:SF4845 2.7 26.8 1.0 FE4 A:SF4845 2.7 26.8 1.0 FE3 A:SF4845 2.7 26.8 1.0 CB B:CYS571 3.0 21.1 1.0 CA B:CYS571 3.4 21.1 1.0 N B:CYS571 3.5 21.1 1.0 S1 A:SF4845 3.9 26.8 1.0 SG B:CYS562 3.9 23.6 1.0 CZ3 B:TRP670 4.2 17.4 1.0 CB B:CYS562 4.2 23.6 1.0 CD1 A:ILE721 4.3 20.1 1.0 C B:THR570 4.5 23.4 1.0 SG A:CYS584 4.7 22.5 1.0 SG A:CYS575 4.7 23.0 1.0 N B:THR570 4.9 23.4 1.0 CG2 A:ILE721 4.9 20.1 1.0 C B:CYS571 4.9 21.1 1.0 CE3 B:TRP670 5.0 17.4 1.0

Iron binding site 2 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe845 b:26.8 occ:1.00 FE2 A:SF4845 0.0 26.8 1.0 SG A:CYS584 2.3 22.5 1.0 S4 A:SF4845 2.3 26.8 1.0 S3 A:SF4845 2.3 26.8 1.0 S1 A:SF4845 2.3 26.8 1.0 FE1 A:SF4845 2.7 26.8 1.0 FE4 A:SF4845 2.7 26.8 1.0 FE3 A:SF4845 2.7 26.8 1.0 CB A:CYS584 2.9 22.5 1.0 CE3 B:TRP670 3.2 17.4 1.0 CZ3 B:TRP670 3.2 17.4 1.0 S2 A:SF4845 3.9 26.8 1.0 CA A:CYS584 4.1 22.5 1.0 SG B:CYS571 4.3 21.1 1.0 CD2 B:TRP670 4.4 17.4 1.0 NH2 A:ARG725 4.4 17.5 1.0 CH2 B:TRP670 4.4 17.4 1.0 CB A:CYS575 4.7 23.0 1.0 CB B:CYS571 4.7 21.1 1.0 SG A:CYS575 4.7 23.0 1.0 CD1 B:ILE705 4.9 19.8 1.0 NH2 B:ARG709 4.9 18.6 1.0 N A:CYS584 4.9 22.5 1.0 SG B:CYS562 4.9 23.6 1.0

Iron binding site 3 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe845 b:26.8 occ:1.00 FE3 A:SF4845 0.0 26.8 1.0 S4 A:SF4845 2.3 26.8 1.0 S2 A:SF4845 2.3 26.8 1.0 S1 A:SF4845 2.3 26.8 1.0 SG A:CYS575 2.3 23.0 1.0 FE4 A:SF4845 2.7 26.8 1.0 FE2 A:SF4845 2.7 26.8 1.0 FE1 A:SF4845 2.7 26.8 1.0 CB A:CYS575 3.1 23.0 1.0 SG A:CYS584 3.5 22.5 1.0 S3 A:SF4845 3.9 26.8 1.0 O A:GLY577 4.2 25.7 1.0 SG B:CYS562 4.3 23.6 1.0 CB A:CYS584 4.4 22.5 1.0 C A:GLY577 4.4 25.7 1.0 CA A:CYS575 4.6 23.0 1.0 N A:GLY577 4.7 25.7 1.0 CA A:GLY577 4.7 25.7 1.0 SG B:CYS571 4.7 21.1 1.0 CA A:CYS584 4.8 22.5 1.0 N B:PRO565 4.8 24.4 1.0 CD B:PRO565 4.9 24.4 1.0 CD1 A:ILE721 4.9 20.1 1.0 C B:GLY564 4.9 24.8 1.0

Iron binding site 4 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe845 b:26.8 occ:1.00 FE4 A:SF4845 0.0 26.8 1.0 S1 A:SF4845 2.3 26.8 1.0 S2 A:SF4845 2.3 26.8 1.0 SG B:CYS562 2.3 23.6 1.0 S3 A:SF4845 2.3 26.8 1.0 FE3 A:SF4845 2.7 26.8 1.0 FE2 A:SF4845 2.7 26.8 1.0 FE1 A:SF4845 2.7 26.8 1.0 SG A:CYS584 3.4 22.5 1.0 CB B:CYS562 3.5 23.6 1.0 CD1 B:ILE705 3.9 19.8 1.0 S4 A:SF4845 3.9 26.8 1.0 CB A:PRO578 4.4 26.7 1.0 CA A:PRO578 4.5 26.7 1.0 O A:GLY577 4.5 25.7 1.0 N A:PRO578 4.6 26.7 1.0 C A:GLY577 4.7 25.7 1.0 CG2 B:ILE705 4.7 19.8 1.0 O B:PRO561 4.7 23.4 1.0 CA B:CYS562 4.8 23.6 1.0 C B:PRO561 4.8 23.4 1.0 SG A:CYS575 4.9 23.0 1.0 N B:CYS562 4.9 23.6 1.0 CB A:CYS584 5.0 22.5 1.0 SG B:CYS571 5.0 21.1 1.0 CG1 B:ILE705 5.0 19.8 1.0

Iron binding site 5 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:41.2 occ:1.00 FE1 C:SF4101 0.0 41.2 1.0 S2 C:SF4101 2.3 41.2 1.0 S4 C:SF4101 2.3 41.2 1.0 S3 C:SF4101 2.3 41.2 1.0 SG C:CYS51 2.3 33.7 1.0 FE4 C:SF4101 2.7 41.2 1.0 FE2 C:SF4101 2.7 41.2 1.0 FE3 C:SF4101 2.7 41.2 1.0 N C:LYS52 3.4 32.5 1.0 N C:CYS51 3.5 33.7 1.0 CB C:CYS51 3.7 33.7 1.0 S1 C:SF4101 3.9 41.2 1.0 CA C:CYS51 3.9 33.7 1.0 N C:ARG53 4.0 36.2 1.0 CD C:PRO22 4.1 37.1 1.0 C C:CYS51 4.1 33.7 1.0 CA C:LYS52 4.2 32.5 1.0 C C:GLY50 4.3 34.1 1.0 N C:GLY50 4.4 34.1 1.0 C C:LYS52 4.6 32.5 1.0 CA C:GLY50 4.6 34.1 1.0 CG2 C:VAL49 4.6 35.0 1.0 SG C:CYS48 4.6 39.3 1.0 SG C:CYS21 4.7 40.1 1.0 SG C:CYS54 4.7 40.0 1.0 CG C:PRO22 4.7 37.1 1.0 N C:CYS54 4.7 40.0 1.0 CB C:ARG53 4.8 36.2 1.0 CA C:ARG53 4.9 36.2 1.0

Iron binding site 6 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:41.2 occ:1.00 FE2 C:SF4101 0.0 41.2 1.0 S3 C:SF4101 2.3 41.2 1.0 S1 C:SF4101 2.3 41.2 1.0 S4 C:SF4101 2.3 41.2 1.0 SG C:CYS21 2.3 40.1 1.0 FE4 C:SF4101 2.7 41.2 1.0 FE1 C:SF4101 2.7 41.2 1.0 FE3 C:SF4101 2.7 41.2 1.0 CB C:CYS21 2.9 40.1 1.0 CA C:CYS21 3.5 40.1 1.0 S2 C:SF4101 3.9 41.2 1.0 CD C:PRO22 4.0 37.1 1.0 CB C:VAL25 4.3 42.9 1.0 C C:CYS21 4.4 40.1 1.0 CD1 C:LEU26 4.4 45.9 1.0 N C:PRO22 4.5 37.1 1.0 SG C:CYS51 4.5 33.7 1.0 N C:CYS21 4.5 40.1 1.0 CG2 C:VAL25 4.6 42.9 1.0 CB C:CYS54 4.6 40.0 1.0 CG C:LEU26 4.7 45.9 1.0 SG C:CYS54 4.7 40.0 1.0 OG1 C:THR23 4.8 37.7 1.0 CG1 C:VAL25 4.9 42.9 1.0 SG C:CYS48 5.0 39.3 1.0

Iron binding site 7 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:41.2 occ:1.00 FE3 C:SF4101 0.0 41.2 1.0 S4 C:SF4101 2.3 41.2 1.0 S2 C:SF4101 2.3 41.2 1.0 S1 C:SF4101 2.3 41.2 1.0 SG C:CYS54 2.3 40.0 1.0 FE4 C:SF4101 2.7 41.2 1.0 FE1 C:SF4101 2.7 41.2 1.0 FE2 C:SF4101 2.7 41.2 1.0 CB C:CYS54 3.2 40.0 1.0 CG2 C:VAL67 3.8 39.0 1.0 S3 C:SF4101 3.9 41.2 1.0 N C:CYS54 3.9 40.0 1.0 CA C:CYS54 4.2 40.0 1.0 CA C:LYS52 4.4 32.5 1.0 N C:LYS52 4.5 32.5 1.0 N C:ARG53 4.6 36.2 1.0 CD1 C:LEU26 4.6 45.9 1.0 C C:LYS52 4.7 32.5 1.0 SG C:CYS48 4.7 39.3 1.0 SG C:CYS51 4.7 33.7 1.0

Iron binding site 8 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:41.2 occ:1.00 FE4 C:SF4101 0.0 41.2 1.0 S1 C:SF4101 2.3 41.2 1.0 S2 C:SF4101 2.3 41.2 1.0 S3 C:SF4101 2.3 41.2 1.0 SG C:CYS48 2.3 39.3 1.0 FE1 C:SF4101 2.7 41.2 1.0 FE2 C:SF4101 2.7 41.2 1.0 FE3 C:SF4101 2.7 41.2 1.0 CB C:CYS48 3.5 39.3 1.0 S4 C:SF4101 3.9 41.2 1.0 CA C:CYS48 3.9 39.3 1.0 N C:GLY50 4.1 34.1 1.0 N C:VAL49 4.3 35.0 1.0 CG2 C:VAL5 4.4 43.5 1.0 C C:CYS48 4.5 39.3 1.0 CG2 C:VAL25 4.5 42.9 1.0 CB C:VAL25 4.6 42.9 1.0 SG C:CYS21 4.6 40.1 1.0 CA C:GLY50 4.6 34.1 1.0 CG1 C:VAL25 4.6 42.9 1.0 CG2 C:VAL67 4.8 39.0 1.0 N C:CYS51 4.9 33.7 1.0 SG C:CYS51 4.9 33.7 1.0 SG C:CYS54 5.0 40.0 1.0

Iron binding site 9 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:58.2 occ:1.00 FE1 C:SF4102 0.0 58.2 1.0 S2 C:SF4102 2.3 58.2 1.0 S3 C:SF4102 2.3 58.2 1.0 S4 C:SF4102 2.3 58.2 1.0 SG C:CYS58 2.3 48.3 1.0 FE4 C:SF4102 2.7 58.2 1.0 FE2 C:SF4102 2.7 58.2 1.0 FE3 C:SF4102 2.7 58.2 1.0 CB C:CYS58 3.1 48.3 1.0 CA C:CYS58 3.6 48.3 1.0 S1 C:SF4102 3.9 58.2 1.0 CD C:PRO59 4.1 49.1 1.0 CB C:SER64 4.2 47.4 1.0 CG2 C:ILE65 4.4 42.9 1.0 SG C:CYS17 4.5 48.7 1.0 C C:CYS58 4.6 48.3 1.0 SG C:CYS14 4.6 56.3 1.0 CB C:CYS17 4.7 48.7 1.0 N C:CYS58 4.7 48.3 1.0 N C:PRO59 4.7 49.1 1.0 OG C:SER64 4.8 47.4 1.0 N C:SER64 4.9 47.4 1.0 N C:ILE65 4.9 42.9 1.0 CG2 C:THR60 5.0 49.5 1.0 SG C:CYS11 5.0 57.7 1.0

Iron binding site 10 out of 12 in the Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Wild-Type Psi MONOMER2 From Cyanophora Paradoxa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:58.2 occ:1.00 FE2 C:SF4102 0.0 58.2 1.0 SG C:CYS17 2.3 48.7 1.0 S3 C:SF4102 2.3 58.2 1.0 S1 C:SF4102 2.3 58.2 1.0 S4 C:SF4102 2.3 58.2 1.0 FE4 C:SF4102 2.7 58.2 1.0 FE3 C:SF4102 2.7 58.2 1.0 FE1 C:SF4102 2.7 58.2 1.0 CB C:CYS17 3.4 48.7 1.0 CB C:ALA40 3.8 57.3 1.0 S2 C:SF4102 3.9 58.2 1.0 SG C:CYS11 4.2 57.7 1.0 N C:CYS17 4.2 48.7 1.0 CA C:CYS17 4.4 48.7 1.0 SG C:CYS14 4.7 56.3 1.0 CG2 C:ILE65 4.7 42.9 1.0 N C:THR15 5.0 53.6 1.0

K.Kato, R.Nagao, Y.Ueno, M.Yokono, T.Suzuki, T.Y.Jiang, N.Dohmae, F.Akita, S.Akimoto, N.Miyazaki, J.R.Shen. Structural Insights Into An Evolutionary Turning-Point of Photosystem I From Prokaryotes to Eukaryotes Biorxiv 2022.
DOI: 10.1101/2022.01.03.474851