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Iron in PDB 7dwq: Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina

Enzymatic activity of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina

All present enzymatic activity of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina:
1.97.1.12;

Other elements in 7dwq:

The structure of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina also contains other interesting chemical elements:

Magnesium (Mg) 77 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina (pdb code 7dwq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina, PDB code: 7dwq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 7dwq

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Iron binding site 1 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:101.9
occ:1.00
 FE1 A:SF43001 0.0 101.9 1.0
S4 A:SF43001 2.3 101.9 1.0
SG B:CYS571 2.3 96.3 1.0
S2 A:SF43001 2.3 101.9 1.0
S3 A:SF43001 2.3 101.9 1.0
FE2 A:SF43001 2.7 101.9 1.0
FE3 A:SF43001 2.7 101.9 1.0
FE4 A:SF43001 2.7 101.9 1.0
CB B:CYS571 3.3 96.3 1.0
CA B:CYS571 3.8 96.3 1.0
S1 A:SF43001 3.9 101.9 1.0
N B:CYS571 4.2 96.3 1.0
CD1 A:ILE722 4.4 96.5 1.0
CZ3 B:TRP670 4.4 80.1 1.0
CB B:CYS562 4.7 102.9 1.0
SG B:CYS562 4.7 102.9 1.0
SG A:CYS585 4.8 90.5 1.0
SG A:CYS576 4.8 97.3 1.0
C B:THR570 5.0 100.2 1.0

Iron binding site 2 out of 12 in 7dwq

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Iron binding site 2 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:101.9
occ:1.00
 FE2 A:SF43001 0.0 101.9 1.0
SG B:CYS562 2.3 102.9 1.0
S1 A:SF43001 2.3 101.9 1.0
S3 A:SF43001 2.3 101.9 1.0
S4 A:SF43001 2.3 101.9 1.0
FE1 A:SF43001 2.7 101.9 1.0
FE4 A:SF43001 2.7 101.9 1.0
FE3 A:SF43001 2.7 101.9 1.0
CB B:CYS562 3.0 102.9 1.0
S2 A:SF43001 3.8 101.9 1.0
N B:GLY564 4.4 106.1 1.0
CA B:CYS562 4.4 102.9 1.0
CA B:GLY564 4.5 106.1 1.0
SG B:CYS571 4.6 96.3 1.0
C B:GLY564 4.6 106.1 1.0
SG A:CYS576 4.7 97.3 1.0
SG A:CYS585 4.7 90.5 1.0
O B:GLY564 4.8 106.1 1.0
CB A:PRO579 4.8 96.9 1.0
CD1 B:ILE705 4.8 81.7 1.0
CA B:CYS571 4.9 96.3 1.0
N A:PRO579 4.9 96.9 1.0
N B:CYS562 5.0 102.9 1.0

Iron binding site 3 out of 12 in 7dwq

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Iron binding site 3 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:101.9
occ:1.00
 FE3 A:SF43001 0.0 101.9 1.0
S2 A:SF43001 2.2 101.9 1.0
SG A:CYS585 2.2 90.5 1.0
S1 A:SF43001 2.3 101.9 1.0
S4 A:SF43001 2.3 101.9 1.0
FE4 A:SF43001 2.7 101.9 1.0
FE1 A:SF43001 2.7 101.9 1.0
FE2 A:SF43001 2.7 101.9 1.0
CB A:CYS585 3.5 90.5 1.0
S3 A:SF43001 3.9 101.9 1.0
CA A:CYS585 4.0 90.5 1.0
CD1 B:ILE705 4.1 81.7 1.0
CB A:CYS576 4.4 97.3 1.0
CE3 B:TRP670 4.5 80.1 1.0
CZ3 B:TRP670 4.5 80.1 1.0
N A:CYS585 4.5 90.5 1.0
SG A:CYS576 4.6 97.3 1.0
SG B:CYS562 4.8 102.9 1.0
SG B:CYS571 4.8 96.3 1.0

Iron binding site 4 out of 12 in 7dwq

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Iron binding site 4 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:101.9
occ:1.00
 FE4 A:SF43001 0.0 101.9 1.0
SG A:CYS576 2.3 97.3 1.0
S1 A:SF43001 2.3 101.9 1.0
S2 A:SF43001 2.3 101.9 1.0
S3 A:SF43001 2.3 101.9 1.0
FE3 A:SF43001 2.7 101.9 1.0
FE2 A:SF43001 2.7 101.9 1.0
FE1 A:SF43001 2.7 101.9 1.0
CB A:CYS576 2.8 97.3 1.0
S4 A:SF43001 3.8 101.9 1.0
CA A:CYS576 4.3 97.3 1.0
N B:PRO565 4.6 106.6 1.0
SG A:CYS585 4.6 90.5 1.0
N A:GLY578 4.6 99.5 1.0
SG B:CYS562 4.6 102.9 1.0
O A:GLY578 4.7 99.5 1.0
SG B:CYS571 4.7 96.3 1.0
C A:GLY578 4.7 99.5 1.0
CB B:PRO565 4.7 106.6 1.0
C B:GLY564 4.7 106.1 1.0
CD B:PRO565 4.8 106.6 1.0
CA A:GLY578 4.8 99.5 1.0
N A:CYS576 4.8 97.3 1.0
CA B:PRO565 4.9 106.6 1.0
C A:CYS576 5.0 97.3 1.0

Iron binding site 5 out of 12 in 7dwq

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Iron binding site 5 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3002

b:127.3
occ:1.00
 FE1 C:SF43002 0.0 127.3 1.0
S4 C:SF43002 2.3 127.3 1.0
SG C:CYS51 2.3 115.8 1.0
S2 C:SF43002 2.3 127.3 1.0
S3 C:SF43002 2.3 127.3 1.0
FE2 C:SF43002 2.7 127.3 1.0
FE4 C:SF43002 2.7 127.3 1.0
FE3 C:SF43002 2.7 127.3 1.0
N C:CYS51 3.5 115.8 1.0
CB C:CYS51 3.6 115.8 1.0
N C:LYS52 3.7 111.4 1.0
S1 C:SF43002 3.9 127.3 1.0
CD C:PRO22 3.9 119.2 1.0
CA C:CYS51 3.9 115.8 1.0
N C:ARG53 4.0 114.5 1.0
C C:CYS51 4.1 115.8 1.0
C C:GLY50 4.5 113.0 1.0
CG C:PRO22 4.5 119.2 1.0
CB C:ARG53 4.6 114.5 1.0
CA C:LYS52 4.6 111.4 1.0
N C:GLY50 4.6 113.0 1.0
SG C:CYS21 4.6 125.4 1.0
CG2 C:VAL49 4.6 112.1 1.0
N C:CYS54 4.7 125.1 1.0
SG C:CYS54 4.7 125.1 1.0
SG C:CYS48 4.7 118.5 1.0
CA C:GLY50 4.8 113.0 1.0
C C:LYS52 4.8 111.4 1.0
CA C:ARG53 4.8 114.5 1.0

Iron binding site 6 out of 12 in 7dwq

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Iron binding site 6 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3002

b:127.3
occ:1.00
 FE2 C:SF43002 0.0 127.3 1.0
SG C:CYS21 2.3 125.4 1.0
S1 C:SF43002 2.3 127.3 1.0
S3 C:SF43002 2.3 127.3 1.0
S4 C:SF43002 2.3 127.3 1.0
FE1 C:SF43002 2.7 127.3 1.0
FE4 C:SF43002 2.7 127.3 1.0
FE3 C:SF43002 2.7 127.3 1.0
CB C:CYS21 3.3 125.4 1.0
S2 C:SF43002 3.9 127.3 1.0
CA C:CYS21 3.9 125.4 1.0
CD C:PRO22 3.9 119.2 1.0
CB C:VAL25 4.2 126.2 1.0
OG1 C:THR23 4.3 118.8 1.0
CG2 C:VAL25 4.4 126.2 1.0
N C:PRO22 4.6 119.2 1.0
SG C:CYS51 4.6 115.8 1.0
C C:CYS21 4.6 125.4 1.0
SG C:CYS54 4.7 125.1 1.0
SG C:CYS48 4.8 118.5 1.0
N C:VAL25 4.9 126.2 1.0
CB C:CYS54 4.9 125.1 1.0

Iron binding site 7 out of 12 in 7dwq

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Iron binding site 7 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3002

b:127.3
occ:1.00
 FE3 C:SF43002 0.0 127.3 1.0
S2 C:SF43002 2.2 127.3 1.0
SG C:CYS54 2.3 125.1 1.0
S1 C:SF43002 2.3 127.3 1.0
S4 C:SF43002 2.3 127.3 1.0
FE4 C:SF43002 2.7 127.3 1.0
FE1 C:SF43002 2.7 127.3 1.0
FE2 C:SF43002 2.7 127.3 1.0
CB C:CYS54 3.2 125.1 1.0
N C:CYS54 3.8 125.1 1.0
S3 C:SF43002 3.9 127.3 1.0
CG2 C:VAL67 4.0 120.5 1.0
CA C:CYS54 4.1 125.1 1.0
N C:ARG53 4.5 114.5 1.0
N C:LYS52 4.6 111.4 1.0
SG C:CYS48 4.7 118.5 1.0
CA C:LYS52 4.8 111.4 1.0
SG C:CYS51 4.8 115.8 1.0
SG C:CYS21 4.8 125.4 1.0
C C:ARG53 4.9 114.5 1.0
C C:LYS52 5.0 111.4 1.0

Iron binding site 8 out of 12 in 7dwq

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Iron binding site 8 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3002

b:127.3
occ:1.00
 FE4 C:SF43002 0.0 127.3 1.0
S1 C:SF43002 2.3 127.3 1.0
SG C:CYS48 2.3 118.5 1.0
S2 C:SF43002 2.3 127.3 1.0
S3 C:SF43002 2.3 127.3 1.0
FE3 C:SF43002 2.7 127.3 1.0
FE2 C:SF43002 2.7 127.3 1.0
FE1 C:SF43002 2.7 127.3 1.0
CB C:CYS48 3.4 118.5 1.0
N C:GLY50 3.8 113.0 1.0
S4 C:SF43002 3.9 127.3 1.0
CA C:CYS48 4.0 118.5 1.0
N C:VAL49 4.2 112.1 1.0
CA C:GLY50 4.2 113.0 1.0
C C:CYS48 4.4 118.5 1.0
N C:CYS51 4.5 115.8 1.0
CG2 C:VAL5 4.8 124.8 1.0
CG2 C:VAL25 4.8 126.2 1.0
SG C:CYS54 4.8 125.1 1.0
SG C:CYS21 4.8 125.4 1.0
SG C:CYS51 4.8 115.8 1.0
CG2 C:VAL67 4.8 120.5 1.0
C C:GLY50 4.8 113.0 1.0
C C:VAL49 4.9 112.1 1.0
CB C:VAL25 4.9 126.2 1.0

Iron binding site 9 out of 12 in 7dwq

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Iron binding site 9 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3003

b:160.9
occ:1.00
 FE1 C:SF43003 0.0 160.9 1.0
S4 C:SF43003 2.3 160.9 1.0
SG C:CYS11 2.3 159.7 1.0
S2 C:SF43003 2.3 160.9 1.0
S3 C:SF43003 2.3 160.9 1.0
CB C:CYS11 2.3 159.7 1.0
FE2 C:SF43003 2.7 160.9 1.0
FE4 C:SF43003 2.7 160.9 1.0
FE3 C:SF43003 2.7 160.9 1.0
CA C:CYS11 3.7 159.7 1.0
S1 C:SF43003 3.9 160.9 1.0
N C:GLY13 3.9 161.4 1.0
C C:CYS11 4.1 159.7 1.0
N C:ILE12 4.2 162.4 1.0
CA C:GLY13 4.3 161.4 1.0
N C:CYS14 4.6 154.8 1.0
SG C:CYS58 4.7 137.2 1.0
SG C:CYS14 4.8 154.8 1.0
N C:CYS11 4.8 159.7 1.0
SG C:CYS17 4.8 146.3 1.0
O C:CYS11 4.9 159.7 1.0
C C:GLY13 4.9 161.4 1.0
CB C:ALA40 4.9 154.2 1.0

Iron binding site 10 out of 12 in 7dwq

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Iron binding site 10 out of 12 in the Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Photosystem I From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe3003

b:160.9
occ:1.00
 FE2 C:SF43003 0.0 160.9 1.0
S1 C:SF43003 2.3 160.9 1.0
SG C:CYS17 2.3 146.3 1.0
S3 C:SF43003 2.3 160.9 1.0
S4 C:SF43003 2.3 160.9 1.0
FE1 C:SF43003 2.7 160.9 1.0
FE4 C:SF43003 2.7 160.9 1.0
FE3 C:SF43003 2.7 160.9 1.0
CB C:CYS17 3.0 146.3 1.0
S2 C:SF43003 3.8 160.9 1.0
N C:CYS17 4.1 146.3 1.0
CA C:CYS17 4.2 146.3 1.0
CB C:ALA40 4.2 154.2 1.0
SG C:CYS11 4.7 159.7 1.0
SG C:CYS14 4.8 154.8 1.0
N C:THR15 4.8 149.0 1.0
CE C:MET28 4.8 156.7 1.0
SG C:CYS58 4.9 137.2 1.0
CB C:CYS11 4.9 159.7 1.0

Reference:

C.Xu, Q.Zhu, J.H.Chen, L.Shen, X.Yi, Z.Huang, W.Wang, M.Chen, T.Kuang, J.R.Shen, X.Zhang, G.Han. A Unique Photosystem I Reaction Center From A Chlorophyll D-Containing Cyanobacterium Acaryochloris Marina. J Integr Plant Biol 2021.
ISSN: ISSN 1744-7909
PubMed: 34002536
DOI: 10.1111/JIPB.13113
Page generated: Thu Aug 8 04:20:03 2024

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