Iron in PDB 7dy3: High Resolution Crystal Structure of Hemoglobin M Iwate.
Protein crystallography data
The structure of High Resolution Crystal Structure of Hemoglobin M Iwate., PDB code: 7dy3
was solved by
M.Ohki,
S.-Y.Park,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
13.08 /
1.40
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.494,
86.275,
121.005,
90,
99.25,
90
|
|
R / Rfree (%)
|
16.8 /
19.3
|
Iron Binding Sites:
The binding sites of Iron atom in the High Resolution Crystal Structure of Hemoglobin M Iwate.
(pdb code 7dy3). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
High Resolution Crystal Structure of Hemoglobin M Iwate., PDB code: 7dy3:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 7dy3
Go back to
Iron Binding Sites List in 7dy3
Iron binding site 1 out
of 8 in the High Resolution Crystal Structure of Hemoglobin M Iwate.
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of High Resolution Crystal Structure of Hemoglobin M Iwate. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:7.1
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
7.1
|
1.0
|
|
OH
|
A:TYR87
|
2.0
|
13.9
|
1.0
|
|
NC
|
A:HEM201
|
2.1
|
5.6
|
1.0
|
|
NB
|
A:HEM201
|
2.1
|
6.4
|
1.0
|
|
ND
|
A:HEM201
|
2.1
|
6.1
|
1.0
|
|
NA
|
A:HEM201
|
2.1
|
8.7
|
1.0
|
|
C4B
|
A:HEM201
|
3.1
|
6.8
|
1.0
|
|
C1C
|
A:HEM201
|
3.1
|
6.5
|
1.0
|
|
C1B
|
A:HEM201
|
3.1
|
7.2
|
1.0
|
|
C4C
|
A:HEM201
|
3.1
|
5.5
|
1.0
|
|
C1A
|
A:HEM201
|
3.1
|
7.6
|
1.0
|
|
C4D
|
A:HEM201
|
3.1
|
7.1
|
1.0
|
|
C1D
|
A:HEM201
|
3.1
|
6.5
|
1.0
|
|
C4A
|
A:HEM201
|
3.1
|
8.7
|
1.0
|
|
CZ
|
A:TYR87
|
3.2
|
7.5
|
1.0
|
|
CHC
|
A:HEM201
|
3.4
|
5.2
|
1.0
|
|
CHA
|
A:HEM201
|
3.5
|
7.7
|
1.0
|
|
CHD
|
A:HEM201
|
3.5
|
6.3
|
1.0
|
|
CHB
|
A:HEM201
|
3.5
|
7.0
|
1.0
|
|
NE2
|
A:HIS58
|
3.9
|
11.4
|
1.0
|
|
CE2
|
A:TYR87
|
4.0
|
7.3
|
1.0
|
|
CE1
|
A:TYR87
|
4.1
|
7.3
|
1.0
|
|
C3B
|
A:HEM201
|
4.3
|
6.8
|
1.0
|
|
C2C
|
A:HEM201
|
4.3
|
5.5
|
1.0
|
|
CE1
|
A:HIS58
|
4.3
|
11.4
|
1.0
|
|
C2B
|
A:HEM201
|
4.3
|
7.2
|
1.0
|
|
C3C
|
A:HEM201
|
4.3
|
6.0
|
1.0
|
|
C2A
|
A:HEM201
|
4.3
|
7.6
|
1.0
|
|
C3A
|
A:HEM201
|
4.3
|
7.8
|
1.0
|
|
C2D
|
A:HEM201
|
4.3
|
7.0
|
1.0
|
|
C3D
|
A:HEM201
|
4.3
|
8.2
|
1.0
|
|
CD1
|
A:LEU91
|
4.8
|
9.4
|
1.0
|
|
CG2
|
A:VAL62
|
4.8
|
6.9
|
1.0
|
|
Iron binding site 2 out
of 8 in 7dy3
Go back to
Iron Binding Sites List in 7dy3
Iron binding site 2 out
of 8 in the High Resolution Crystal Structure of Hemoglobin M Iwate.
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of High Resolution Crystal Structure of Hemoglobin M Iwate. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:8.3
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
8.3
|
1.0
|
|
NC
|
B:HEM201
|
2.0
|
6.7
|
1.0
|
|
NA
|
B:HEM201
|
2.1
|
8.8
|
1.0
|
|
ND
|
B:HEM201
|
2.1
|
6.5
|
1.0
|
|
NB
|
B:HEM201
|
2.1
|
6.5
|
1.0
|
|
NE2
|
B:HIS92
|
2.2
|
6.5
|
1.0
|
|
O
|
B:HOH321
|
2.3
|
17.7
|
1.0
|
|
C1C
|
B:HEM201
|
3.0
|
6.6
|
1.0
|
|
C4D
|
B:HEM201
|
3.1
|
8.4
|
1.0
|
|
C4C
|
B:HEM201
|
3.1
|
5.4
|
1.0
|
|
C1A
|
B:HEM201
|
3.1
|
8.4
|
1.0
|
|
C4B
|
B:HEM201
|
3.1
|
8.2
|
1.0
|
|
C4A
|
B:HEM201
|
3.1
|
7.8
|
1.0
|
|
C1B
|
B:HEM201
|
3.1
|
7.1
|
1.0
|
|
C1D
|
B:HEM201
|
3.1
|
7.4
|
1.0
|
|
CE1
|
B:HIS92
|
3.1
|
7.0
|
1.0
|
|
CD2
|
B:HIS92
|
3.2
|
5.0
|
1.0
|
|
CHA
|
B:HEM201
|
3.4
|
8.9
|
1.0
|
|
CHC
|
B:HEM201
|
3.4
|
8.2
|
1.0
|
|
CHB
|
B:HEM201
|
3.4
|
9.1
|
1.0
|
|
CHD
|
B:HEM201
|
3.5
|
6.5
|
1.0
|
|
ND1
|
B:HIS92
|
4.2
|
6.8
|
1.0
|
|
C2C
|
B:HEM201
|
4.3
|
5.3
|
1.0
|
|
NE2
|
B:HIS63
|
4.3
|
15.5
|
1.0
|
|
C3C
|
B:HEM201
|
4.3
|
7.2
|
1.0
|
|
C3D
|
B:HEM201
|
4.3
|
8.1
|
1.0
|
|
C2D
|
B:HEM201
|
4.3
|
9.4
|
1.0
|
|
C3A
|
B:HEM201
|
4.3
|
8.0
|
1.0
|
|
C2A
|
B:HEM201
|
4.3
|
8.0
|
1.0
|
|
C3B
|
B:HEM201
|
4.3
|
7.2
|
1.0
|
|
C2B
|
B:HEM201
|
4.3
|
8.2
|
1.0
|
|
CG
|
B:HIS92
|
4.3
|
5.7
|
1.0
|
|
CG2
|
B:VAL67
|
4.5
|
15.4
|
1.0
|
|
CE1
|
B:HIS63
|
4.8
|
15.5
|
1.0
|
|
CD1
|
B:LEU96
|
5.0
|
7.6
|
1.0
|
|
Iron binding site 3 out
of 8 in 7dy3
Go back to
Iron Binding Sites List in 7dy3
Iron binding site 3 out
of 8 in the High Resolution Crystal Structure of Hemoglobin M Iwate.
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of High Resolution Crystal Structure of Hemoglobin M Iwate. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:7.8
occ:1.00
|
FE
|
C:HEM201
|
0.0
|
7.8
|
1.0
|
|
OH
|
C:TYR87
|
2.0
|
13.2
|
1.0
|
|
NC
|
C:HEM201
|
2.1
|
6.6
|
1.0
|
|
ND
|
C:HEM201
|
2.1
|
7.6
|
1.0
|
|
NA
|
C:HEM201
|
2.1
|
7.8
|
1.0
|
|
NB
|
C:HEM201
|
2.1
|
7.4
|
1.0
|
|
C4B
|
C:HEM201
|
3.1
|
5.9
|
1.0
|
|
C4C
|
C:HEM201
|
3.1
|
6.6
|
1.0
|
|
C1C
|
C:HEM201
|
3.1
|
6.2
|
1.0
|
|
C1D
|
C:HEM201
|
3.1
|
5.9
|
1.0
|
|
C1A
|
C:HEM201
|
3.1
|
10.4
|
1.0
|
|
C4D
|
C:HEM201
|
3.1
|
8.6
|
1.0
|
|
C1B
|
C:HEM201
|
3.1
|
7.9
|
1.0
|
|
C4A
|
C:HEM201
|
3.1
|
8.7
|
1.0
|
|
CZ
|
C:TYR87
|
3.2
|
8.2
|
1.0
|
|
CHD
|
C:HEM201
|
3.4
|
5.8
|
1.0
|
|
CHC
|
C:HEM201
|
3.4
|
6.9
|
1.0
|
|
CHA
|
C:HEM201
|
3.5
|
8.5
|
1.0
|
|
CHB
|
C:HEM201
|
3.5
|
7.2
|
1.0
|
|
CE2
|
C:TYR87
|
3.9
|
8.3
|
1.0
|
|
NE2
|
C:HIS58
|
4.0
|
13.2
|
1.0
|
|
CE1
|
C:TYR87
|
4.2
|
9.3
|
1.0
|
|
C3B
|
C:HEM201
|
4.3
|
8.1
|
1.0
|
|
C3C
|
C:HEM201
|
4.3
|
6.8
|
1.0
|
|
C2C
|
C:HEM201
|
4.3
|
6.7
|
1.0
|
|
C2B
|
C:HEM201
|
4.3
|
6.1
|
1.0
|
|
C2D
|
C:HEM201
|
4.3
|
10.0
|
1.0
|
|
C3D
|
C:HEM201
|
4.3
|
9.1
|
1.0
|
|
CE1
|
C:HIS58
|
4.3
|
11.1
|
1.0
|
|
C2A
|
C:HEM201
|
4.3
|
8.7
|
1.0
|
|
C3A
|
C:HEM201
|
4.3
|
7.9
|
1.0
|
|
CG2
|
C:VAL62
|
4.8
|
7.7
|
1.0
|
|
CD1
|
C:LEU91
|
4.9
|
10.1
|
1.0
|
|
Iron binding site 4 out
of 8 in 7dy3
Go back to
Iron Binding Sites List in 7dy3
Iron binding site 4 out
of 8 in the High Resolution Crystal Structure of Hemoglobin M Iwate.
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of High Resolution Crystal Structure of Hemoglobin M Iwate. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:8.8
occ:1.00
|
FE
|
D:HEM201
|
0.0
|
8.8
|
1.0
|
|
NC
|
D:HEM201
|
2.0
|
7.5
|
1.0
|
|
ND
|
D:HEM201
|
2.0
|
9.3
|
1.0
|
|
NB
|
D:HEM201
|
2.1
|
6.9
|
1.0
|
|
NA
|
D:HEM201
|
2.1
|
8.3
|
1.0
|
|
NE2
|
D:HIS92
|
2.1
|
7.8
|
1.0
|
|
O
|
D:HOH315
|
2.2
|
11.0
|
1.0
|
|
CE1
|
D:HIS92
|
3.0
|
6.9
|
1.0
|
|
C4C
|
D:HEM201
|
3.0
|
7.8
|
1.0
|
|
C1C
|
D:HEM201
|
3.0
|
5.5
|
1.0
|
|
C1D
|
D:HEM201
|
3.1
|
8.4
|
1.0
|
|
C4D
|
D:HEM201
|
3.1
|
8.7
|
1.0
|
|
C4B
|
D:HEM201
|
3.1
|
8.1
|
1.0
|
|
C4A
|
D:HEM201
|
3.1
|
8.0
|
1.0
|
|
C1A
|
D:HEM201
|
3.1
|
9.1
|
1.0
|
|
C1B
|
D:HEM201
|
3.1
|
8.2
|
1.0
|
|
CD2
|
D:HIS92
|
3.2
|
7.4
|
1.0
|
|
CHD
|
D:HEM201
|
3.4
|
8.9
|
1.0
|
|
CHC
|
D:HEM201
|
3.4
|
7.1
|
1.0
|
|
CHB
|
D:HEM201
|
3.5
|
7.7
|
1.0
|
|
CHA
|
D:HEM201
|
3.5
|
9.4
|
1.0
|
|
ND1
|
D:HIS92
|
4.2
|
6.7
|
1.0
|
|
NE2
|
D:HIS63
|
4.2
|
11.9
|
1.0
|
|
C2C
|
D:HEM201
|
4.3
|
6.7
|
1.0
|
|
C3C
|
D:HEM201
|
4.3
|
6.8
|
1.0
|
|
C3D
|
D:HEM201
|
4.3
|
9.5
|
1.0
|
|
C2D
|
D:HEM201
|
4.3
|
10.9
|
1.0
|
|
CG
|
D:HIS92
|
4.3
|
6.4
|
1.0
|
|
C3B
|
D:HEM201
|
4.3
|
7.8
|
1.0
|
|
C2B
|
D:HEM201
|
4.3
|
8.7
|
1.0
|
|
C3A
|
D:HEM201
|
4.3
|
9.5
|
1.0
|
|
C2A
|
D:HEM201
|
4.3
|
10.7
|
1.0
|
|
CG2
|
D:VAL67
|
4.7
|
10.3
|
1.0
|
|
CE1
|
D:HIS63
|
4.7
|
14.7
|
1.0
|
|
Iron binding site 5 out
of 8 in 7dy3
Go back to
Iron Binding Sites List in 7dy3
Iron binding site 5 out
of 8 in the High Resolution Crystal Structure of Hemoglobin M Iwate.
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of High Resolution Crystal Structure of Hemoglobin M Iwate. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:6.6
occ:1.00
|
FE
|
E:HEM201
|
0.0
|
6.6
|
1.0
|
|
OH
|
E:TYR87
|
2.0
|
10.9
|
1.0
|
|
NC
|
E:HEM201
|
2.1
|
6.1
|
1.0
|
|
NB
|
E:HEM201
|
2.1
|
6.4
|
1.0
|
|
NA
|
E:HEM201
|
2.1
|
9.0
|
1.0
|
|
ND
|
E:HEM201
|
2.1
|
6.4
|
1.0
|
|
C4B
|
E:HEM201
|
3.1
|
6.6
|
1.0
|
|
C1C
|
E:HEM201
|
3.1
|
6.9
|
1.0
|
|
C1B
|
E:HEM201
|
3.1
|
6.7
|
1.0
|
|
C4C
|
E:HEM201
|
3.1
|
5.2
|
1.0
|
|
C1D
|
E:HEM201
|
3.1
|
6.4
|
1.0
|
|
C1A
|
E:HEM201
|
3.1
|
6.8
|
1.0
|
|
C4A
|
E:HEM201
|
3.1
|
8.3
|
1.0
|
|
C4D
|
E:HEM201
|
3.1
|
7.3
|
1.0
|
|
CZ
|
E:TYR87
|
3.2
|
6.5
|
1.0
|
|
CHC
|
E:HEM201
|
3.4
|
5.9
|
1.0
|
|
CHB
|
E:HEM201
|
3.5
|
6.5
|
1.0
|
|
CHD
|
E:HEM201
|
3.5
|
5.8
|
1.0
|
|
CHA
|
E:HEM201
|
3.5
|
6.9
|
1.0
|
|
CE1
|
E:TYR87
|
4.0
|
6.6
|
1.0
|
|
CE2
|
E:TYR87
|
4.1
|
8.3
|
1.0
|
|
NE2
|
E:HIS58
|
4.1
|
12.4
|
1.0
|
|
C3B
|
E:HEM201
|
4.3
|
7.1
|
1.0
|
|
C2C
|
E:HEM201
|
4.3
|
7.2
|
1.0
|
|
C2B
|
E:HEM201
|
4.3
|
6.1
|
1.0
|
|
C3C
|
E:HEM201
|
4.3
|
5.1
|
1.0
|
|
C3A
|
E:HEM201
|
4.3
|
8.0
|
1.0
|
|
C2D
|
E:HEM201
|
4.3
|
6.9
|
1.0
|
|
C3D
|
E:HEM201
|
4.3
|
7.4
|
1.0
|
|
C2A
|
E:HEM201
|
4.3
|
8.8
|
1.0
|
|
CE1
|
E:HIS58
|
4.8
|
14.3
|
1.0
|
|
CD1
|
E:LEU91
|
4.9
|
9.3
|
1.0
|
|
CG2
|
E:VAL62
|
4.9
|
7.4
|
1.0
|
|
Iron binding site 6 out
of 8 in 7dy3
Go back to
Iron Binding Sites List in 7dy3
Iron binding site 6 out
of 8 in the High Resolution Crystal Structure of Hemoglobin M Iwate.
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of High Resolution Crystal Structure of Hemoglobin M Iwate. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe201
b:9.0
occ:1.00
|
FE
|
F:HEM201
|
0.0
|
9.0
|
1.0
|
|
NC
|
F:HEM201
|
2.0
|
7.8
|
1.0
|
|
ND
|
F:HEM201
|
2.0
|
8.3
|
1.0
|
|
NA
|
F:HEM201
|
2.0
|
8.9
|
1.0
|
|
NB
|
F:HEM201
|
2.1
|
7.5
|
1.0
|
|
NE2
|
F:HIS92
|
2.2
|
6.5
|
1.0
|
|
O
|
F:HOH326
|
2.2
|
16.6
|
1.0
|
|
C1C
|
F:HEM201
|
3.0
|
7.2
|
1.0
|
|
C4C
|
F:HEM201
|
3.0
|
8.4
|
1.0
|
|
C1D
|
F:HEM201
|
3.1
|
8.4
|
1.0
|
|
C4A
|
F:HEM201
|
3.1
|
8.1
|
1.0
|
|
C4D
|
F:HEM201
|
3.1
|
10.2
|
1.0
|
|
C1A
|
F:HEM201
|
3.1
|
9.1
|
1.0
|
|
C4B
|
F:HEM201
|
3.1
|
7.8
|
1.0
|
|
C1B
|
F:HEM201
|
3.1
|
7.5
|
1.0
|
|
CE1
|
F:HIS92
|
3.1
|
7.4
|
1.0
|
|
CD2
|
F:HIS92
|
3.2
|
8.9
|
1.0
|
|
CHC
|
F:HEM201
|
3.4
|
6.8
|
1.0
|
|
CHD
|
F:HEM201
|
3.4
|
8.2
|
1.0
|
|
CHA
|
F:HEM201
|
3.4
|
8.1
|
1.0
|
|
CHB
|
F:HEM201
|
3.4
|
7.4
|
1.0
|
|
C2C
|
F:HEM201
|
4.3
|
6.7
|
1.0
|
|
C3C
|
F:HEM201
|
4.3
|
8.1
|
1.0
|
|
ND1
|
F:HIS92
|
4.3
|
8.2
|
1.0
|
|
C2D
|
F:HEM201
|
4.3
|
8.5
|
1.0
|
|
C3D
|
F:HEM201
|
4.3
|
9.1
|
1.0
|
|
C2A
|
F:HEM201
|
4.3
|
9.7
|
1.0
|
|
C3A
|
F:HEM201
|
4.3
|
10.0
|
1.0
|
|
C3B
|
F:HEM201
|
4.3
|
9.7
|
1.0
|
|
C2B
|
F:HEM201
|
4.3
|
8.6
|
1.0
|
|
NE2
|
F:HIS63
|
4.3
|
13.7
|
1.0
|
|
CG
|
F:HIS92
|
4.3
|
9.3
|
1.0
|
|
CG2
|
F:VAL67
|
4.5
|
11.8
|
1.0
|
|
CE1
|
F:HIS63
|
4.8
|
13.7
|
1.0
|
|
CD1
|
F:LEU96
|
4.9
|
8.7
|
1.0
|
|
Iron binding site 7 out
of 8 in 7dy3
Go back to
Iron Binding Sites List in 7dy3
Iron binding site 7 out
of 8 in the High Resolution Crystal Structure of Hemoglobin M Iwate.
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of High Resolution Crystal Structure of Hemoglobin M Iwate. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:10.8
occ:1.00
|
FE
|
G:HEM201
|
0.0
|
10.8
|
1.0
|
|
OH
|
G:TYR87
|
2.1
|
14.2
|
1.0
|
|
NB
|
G:HEM201
|
2.1
|
11.2
|
1.0
|
|
NA
|
G:HEM201
|
2.1
|
10.2
|
1.0
|
|
NC
|
G:HEM201
|
2.1
|
8.6
|
1.0
|
|
ND
|
G:HEM201
|
2.1
|
10.4
|
1.0
|
|
C1B
|
G:HEM201
|
3.1
|
10.7
|
1.0
|
|
C4B
|
G:HEM201
|
3.1
|
9.4
|
1.0
|
|
C4A
|
G:HEM201
|
3.1
|
11.4
|
1.0
|
|
C1D
|
G:HEM201
|
3.1
|
9.1
|
1.0
|
|
C4C
|
G:HEM201
|
3.1
|
8.0
|
1.0
|
|
C1C
|
G:HEM201
|
3.1
|
8.4
|
1.0
|
|
C1A
|
G:HEM201
|
3.1
|
14.1
|
1.0
|
|
C4D
|
G:HEM201
|
3.1
|
10.7
|
1.0
|
|
CZ
|
G:TYR87
|
3.3
|
10.3
|
1.0
|
|
CHB
|
G:HEM201
|
3.4
|
11.6
|
1.0
|
|
CHD
|
G:HEM201
|
3.4
|
10.7
|
1.0
|
|
CHC
|
G:HEM201
|
3.4
|
9.8
|
1.0
|
|
CHA
|
G:HEM201
|
3.5
|
13.2
|
1.0
|
|
CE2
|
G:TYR87
|
3.9
|
11.6
|
1.0
|
|
NE2
|
G:HIS58
|
4.1
|
18.0
|
1.0
|
|
CE1
|
G:HIS58
|
4.2
|
17.0
|
1.0
|
|
CE1
|
G:TYR87
|
4.2
|
10.3
|
1.0
|
|
C2B
|
G:HEM201
|
4.3
|
10.7
|
1.0
|
|
C3B
|
G:HEM201
|
4.3
|
9.5
|
1.0
|
|
C3A
|
G:HEM201
|
4.3
|
12.6
|
1.0
|
|
C3C
|
G:HEM201
|
4.3
|
9.9
|
1.0
|
|
C2C
|
G:HEM201
|
4.3
|
9.2
|
1.0
|
|
C2A
|
G:HEM201
|
4.3
|
14.0
|
1.0
|
|
C2D
|
G:HEM201
|
4.3
|
10.9
|
1.0
|
|
C3D
|
G:HEM201
|
4.3
|
11.5
|
1.0
|
|
CG2
|
G:VAL62
|
4.8
|
10.1
|
1.0
|
|
CD1
|
G:LEU91
|
4.8
|
12.3
|
1.0
|
|
Iron binding site 8 out
of 8 in 7dy3
Go back to
Iron Binding Sites List in 7dy3
Iron binding site 8 out
of 8 in the High Resolution Crystal Structure of Hemoglobin M Iwate.
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of High Resolution Crystal Structure of Hemoglobin M Iwate. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:8.3
occ:1.00
|
FE
|
H:HEM201
|
0.0
|
8.3
|
1.0
|
|
NB
|
H:HEM201
|
2.0
|
5.9
|
1.0
|
|
NC
|
H:HEM201
|
2.0
|
7.6
|
1.0
|
|
ND
|
H:HEM201
|
2.0
|
8.4
|
1.0
|
|
NA
|
H:HEM201
|
2.0
|
6.8
|
1.0
|
|
NE2
|
H:HIS92
|
2.1
|
7.6
|
1.0
|
|
O
|
H:HOH326
|
2.2
|
11.7
|
1.0
|
|
C1C
|
H:HEM201
|
3.0
|
6.7
|
1.0
|
|
C4B
|
H:HEM201
|
3.0
|
6.6
|
1.0
|
|
C4D
|
H:HEM201
|
3.1
|
8.2
|
1.0
|
|
C1A
|
H:HEM201
|
3.1
|
9.4
|
1.0
|
|
C1B
|
H:HEM201
|
3.1
|
7.7
|
1.0
|
|
C4A
|
H:HEM201
|
3.1
|
7.7
|
1.0
|
|
C1D
|
H:HEM201
|
3.1
|
8.5
|
1.0
|
|
C4C
|
H:HEM201
|
3.1
|
6.8
|
1.0
|
|
CE1
|
H:HIS92
|
3.1
|
6.5
|
1.0
|
|
CD2
|
H:HIS92
|
3.2
|
6.0
|
1.0
|
|
CHC
|
H:HEM201
|
3.4
|
6.5
|
1.0
|
|
CHA
|
H:HEM201
|
3.4
|
9.3
|
1.0
|
|
CHB
|
H:HEM201
|
3.5
|
8.0
|
1.0
|
|
CHD
|
H:HEM201
|
3.5
|
7.6
|
1.0
|
|
ND1
|
H:HIS92
|
4.2
|
7.2
|
1.0
|
|
NE2
|
H:HIS63
|
4.2
|
12.8
|
1.0
|
|
C3B
|
H:HEM201
|
4.3
|
7.8
|
1.0
|
|
C2C
|
H:HEM201
|
4.3
|
6.7
|
1.0
|
|
CG
|
H:HIS92
|
4.3
|
6.7
|
1.0
|
|
C3C
|
H:HEM201
|
4.3
|
8.2
|
1.0
|
|
C3D
|
H:HEM201
|
4.3
|
8.5
|
1.0
|
|
C2B
|
H:HEM201
|
4.3
|
8.2
|
1.0
|
|
C2D
|
H:HEM201
|
4.3
|
9.9
|
1.0
|
|
C2A
|
H:HEM201
|
4.3
|
11.1
|
1.0
|
|
C3A
|
H:HEM201
|
4.3
|
9.2
|
1.0
|
|
CG2
|
H:VAL67
|
4.7
|
10.6
|
1.0
|
|
CE1
|
H:HIS63
|
4.7
|
14.9
|
1.0
|
|
Reference:
S.Nagatomo,
S.Naoya,
M.Ohki,
S.Y.Park.
High Resolution Crystal Structure of Hemoglobin M Iwate. To Be Published.
Page generated: Thu Aug 8 04:20:49 2024
|
