Iron in PDB 7e06: Trans-3/4-Proline-Hydroxylase H11 with Akg

The structure of Trans-3/4-Proline-Hydroxylase H11 with Akg, PDB code: 7e06 was solved by W.G.Gong, L.Y.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	85.76 / 1.97
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	106.763, 106.763, 144.01, 90, 90, 90
R / Rfree (%)	16.9 / 20.4

The binding sites of Iron atom in the Trans-3/4-Proline-Hydroxylase H11 with Akg (pdb code 7e06). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Trans-3/4-Proline-Hydroxylase H11 with Akg, PDB code: 7e06:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Trans-3/4-Proline-Hydroxylase H11 with Akg


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Trans-3/4-Proline-Hydroxylase H11 with Akg within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:18.8 occ:0.50 O1 A:AKG501 1.8 34.2 1.0 NE2 A:HIS214 2.0 27.9 1.0 O5 A:AKG501 2.1 36.0 1.0 OD1 A:ASP116 2.2 31.2 1.0 NE2 A:HIS114 2.3 36.1 1.0 O A:HOH702 2.4 42.9 1.0 C1 A:AKG501 2.7 47.1 1.0 C2 A:AKG501 2.8 40.0 1.0 CE1 A:HIS214 2.9 32.7 1.0 CD2 A:HIS214 3.1 29.4 1.0 CG A:ASP116 3.1 34.6 1.0 CE1 A:HIS114 3.2 39.7 1.0 CD2 A:HIS114 3.3 35.4 1.0 OD2 A:ASP116 3.4 29.2 1.0 O2 A:AKG501 3.9 42.0 1.0 ND1 A:HIS214 4.0 29.9 1.0 CG A:HIS214 4.2 26.1 1.0 ND1 A:HIS114 4.3 38.9 1.0 C3 A:AKG501 4.3 43.2 1.0 O A:HOH658 4.3 45.4 1.0 CG A:HIS114 4.4 37.1 1.0 CB A:ASP116 4.6 26.5 1.0 O A:HOH735 4.7 42.5 1.0 N A:ASP116 4.9 30.5 1.0 CA A:ASP116 4.9 26.2 1.0

Iron binding site 2 out of 2 in the Trans-3/4-Proline-Hydroxylase H11 with Akg


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Trans-3/4-Proline-Hydroxylase H11 with Akg within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe502 b:34.1 occ:0.50 O2 B:AKG501 1.9 43.2 1.0 NE2 B:HIS214 2.1 30.5 1.0 O5 B:AKG501 2.2 66.1 1.0 OD1 B:ASP116 2.2 34.8 1.0 NE2 B:HIS114 2.3 43.8 1.0 C1 B:AKG501 2.6 66.1 1.0 CE1 B:HIS214 2.7 29.4 1.0 C2 B:AKG501 2.8 59.5 1.0 CG B:ASP116 3.1 34.5 1.0 CE1 B:HIS114 3.1 47.9 1.0 CD2 B:HIS214 3.3 33.4 1.0 OD2 B:ASP116 3.3 33.8 1.0 CD2 B:HIS114 3.3 40.7 1.0 O1 B:AKG501 3.8 60.4 1.0 ND1 B:HIS214 3.9 31.3 1.0 CG B:HIS214 4.2 29.9 1.0 ND1 B:HIS114 4.3 44.1 1.0 O B:HOH644 4.3 35.6 1.0 C3 B:AKG501 4.3 62.4 1.0 CG B:HIS114 4.4 41.2 1.0 CB B:ASP116 4.4 26.8 1.0 O B:HOH725 4.5 51.6 1.0 CG2 B:THR172 4.5 68.8 1.0 CA B:ASP116 4.8 26.8 1.0 CE2 B:PHE208 4.8 22.6 1.0 CB B:THR172 4.8 74.8 1.0 N B:ASP116 4.9 30.9 1.0

W.G.Gong, L.Y.Yang. Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline To Be Published.