Iron in PDB 7e07: Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline

The structure of Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline, PDB code: 7e07 was solved by W.G.Gong, L.Y.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	85.81 / 2.14
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	106.437, 106.437, 145.016, 90, 90, 90
R / Rfree (%)	18.9 / 23.3

The binding sites of Iron atom in the Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline (pdb code 7e07). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline, PDB code: 7e07:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe503 b:32.8 occ:1.00 O1 A:AKG501 1.9 32.4 1.0 O5 A:AKG501 2.1 38.0 1.0 OD1 A:ASP116 2.1 25.8 1.0 NE2 A:HIS214 2.1 23.8 1.0 NE2 A:HIS114 2.3 35.9 1.0 C1 A:AKG501 2.7 40.8 1.0 C2 A:AKG501 2.7 36.9 1.0 CE1 A:HIS214 3.0 26.8 1.0 CE1 A:HIS114 3.1 32.7 1.0 CG A:ASP116 3.1 29.7 1.0 CD2 A:HIS214 3.2 26.2 1.0 CD2 A:HIS114 3.3 33.5 1.0 OD2 A:ASP116 3.5 29.2 1.0 O2 A:AKG501 3.9 37.0 1.0 CG A:PRO502 4.1 35.0 1.0 C3 A:AKG501 4.1 44.5 1.0 ND1 A:HIS214 4.1 26.8 1.0 O A:HOH610 4.2 47.5 1.0 ND1 A:HIS114 4.3 32.6 1.0 CG A:HIS214 4.3 22.8 1.0 CG A:HIS114 4.4 36.8 1.0 CD A:PRO502 4.4 36.8 1.0 CB A:PRO502 4.4 35.1 1.0 CB A:ASP116 4.5 27.0 1.0 CA A:ASP116 4.8 25.1 1.0 N A:ASP116 5.0 28.6 1.0

Iron binding site 2 out of 2 in the Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:32.8 occ:1.00 O2 B:AKG302 1.8 29.9 1.0 OD1 B:ASP116 2.1 30.5 1.0 NE2 B:HIS214 2.1 23.5 1.0 O5 B:AKG302 2.1 40.9 1.0 NE2 B:HIS114 2.3 42.5 1.0 C1 B:AKG302 2.7 40.4 1.0 C2 B:AKG302 2.8 39.0 1.0 CE1 B:HIS214 2.9 26.2 1.0 CG B:ASP116 3.0 34.1 1.0 CE1 B:HIS114 3.2 41.9 1.0 CD2 B:HIS214 3.2 26.0 1.0 OD2 B:ASP116 3.2 28.7 1.0 CD2 B:HIS114 3.3 42.6 1.0 O1 B:AKG302 4.0 32.9 1.0 ND1 B:HIS214 4.1 24.3 1.0 CG B:PRO303 4.2 39.7 1.0 C3 B:AKG302 4.3 40.0 1.0 ND1 B:HIS114 4.3 43.6 1.0 CG B:HIS214 4.3 25.0 1.0 CG B:HIS114 4.4 40.3 1.0 CB B:PRO303 4.4 41.7 1.0 CB B:ASP116 4.4 32.3 1.0 CD B:PRO303 4.7 42.4 1.0 CA B:ASP116 4.8 30.1 1.0 CE2 B:PHE208 4.9 25.1 1.0 C4 B:AKG302 4.9 39.4 1.0 N B:ASP116 4.9 33.0 1.0

W.G.Gong, L.Y.Yang. Trans-3/4-Proline-Hydroxylase H11 with Akg and L-Proline To Be Published.