Iron in PDB 7e0l: Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis

All present enzymatic activity of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis:
1.7.99.1;

The structure of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis, PDB code: 7e0l was solved by T.Fujishiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.05 / 2.82
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	67.95, 67.95, 469.26, 90, 90, 90
R / Rfree (%)	23.4 / 25.9

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Iron atom in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis (pdb code 7e0l). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 36 binding sites of Iron where determined in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis, PDB code: 7e0l:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:106.8 occ:1.00 FE5 A:FS2601 0.0 106.8 1.0 O1 A:FS2601 1.7 96.1 1.0 S5 A:FS2601 2.3 108.2 1.0 S6 A:FS2601 2.3 96.0 1.0 SG A:CYS375 2.4 82.5 1.0 FE6 A:FS2601 2.7 137.2 1.0 CD1 A:TRP241 3.2 99.2 1.0 FE8 A:FS2601 3.3 125.0 1.0 FE7 A:FS2601 3.5 105.9 1.0 NE1 A:TRP241 3.6 95.8 1.0 O8 A:FS2601 3.6 93.1 1.0 CB A:CYS375 3.7 80.8 1.0 O9 A:FS2601 3.7 92.8 1.0 OE1 A:GLU217 4.0 89.7 1.0 CG A:TRP241 4.1 92.4 1.0 SG A:CYS261 4.1 96.4 1.0 CE2 A:TRP241 4.6 86.6 1.0 CD A:GLU217 4.6 82.0 1.0 CB A:CYS261 4.7 85.7 1.0 CE1 A:HIS193 4.7 80.2 1.0 CB A:TRP241 4.7 86.2 1.0 CB A:CSS347 4.7 76.1 1.0 N A:CYS375 4.8 78.2 1.0 CA A:CYS375 4.8 79.5 1.0 CD2 A:TRP241 4.8 88.8 1.0 NE2 A:HIS193 5.0 80.5 1.0

Iron binding site 2 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:137.2 occ:1.00 FE6 A:FS2601 0.0 137.2 1.0 O8 A:FS2601 2.1 93.1 1.0 SG A:CYS261 2.1 96.4 1.0 S5 A:FS2601 2.2 108.2 1.0 S6 A:FS2601 2.3 96.0 1.0 FE5 A:FS2601 2.7 106.8 1.0 CB A:CYS261 2.9 85.7 1.0 FE8 A:FS2601 3.1 125.0 1.0 O1 A:FS2601 3.2 96.1 1.0 CA A:CYS261 4.0 74.8 1.0 N A:CYS261 4.1 74.5 1.0 O9 A:FS2601 4.1 92.8 1.0 ND2 A:ASN260 4.2 74.6 1.0 CE A:MET433 4.3 72.7 1.0 OE2 A:GLU434 4.3 92.3 1.0 CD1 A:TRP241 4.3 99.2 1.0 CG A:ASN260 4.4 72.0 1.0 C A:ASN260 4.4 72.4 1.0 OD1 A:ASN260 4.5 73.1 1.0 O A:ASN260 4.5 71.6 1.0 NE1 A:TRP241 4.5 95.8 1.0 CG A:TRP241 4.5 92.4 1.0 CE1 A:HIS193 4.6 80.2 1.0 CE2 A:TRP241 4.7 86.6 1.0 CD2 A:TRP241 4.8 88.8 1.0 SG A:CYS375 5.0 82.5 1.0

Iron binding site 3 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:105.9 occ:1.00 FE7 A:FS2601 0.0 105.9 1.0 O9 A:FS2601 2.1 92.8 1.0 O1 A:FS2601 2.2 96.1 1.0 OE2 A:GLU217 2.4 82.2 1.0 NE2 A:HIS193 2.5 80.5 1.0 CD A:GLU217 2.6 82.0 1.0 SG A:CYS400 2.7 74.4 1.0 OE1 A:GLU217 3.1 89.7 1.0 CE1 A:HIS193 3.3 80.2 1.0 CG A:GLU217 3.4 75.7 1.0 FE5 A:FS2601 3.5 106.8 1.0 CD2 A:HIS193 3.5 74.1 1.0 FE8 A:FS2601 3.6 125.0 1.0 CB A:CYS400 3.7 70.2 1.0 SD A:CSS347 3.9 88.8 1.0 SG A:CYS375 4.0 82.5 1.0 CB A:ALA374 4.1 72.9 1.0 O8 A:FS2601 4.2 93.1 1.0 N A:CYS400 4.3 64.5 1.0 CB A:GLU217 4.4 72.3 1.0 CA A:ALA374 4.4 73.1 1.0 ND1 A:HIS193 4.4 76.1 1.0 N A:CYS375 4.5 78.2 1.0 CG A:HIS193 4.6 73.3 1.0 S5 A:FS2601 4.6 108.2 1.0 CA A:CYS400 4.6 65.3 1.0 S6 A:FS2601 4.8 96.0 1.0 C A:ALA374 4.9 77.1 1.0

Iron binding site 4 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:125.0 occ:1.00 FE8 A:FS2601 0.0 125.0 1.0 O9 A:FS2601 1.9 92.8 1.0 O1 A:FS2601 2.3 96.1 1.0 O8 A:FS2601 2.3 93.1 1.0 S6 A:FS2601 2.4 96.0 1.0 OE2 A:GLU434 2.5 92.3 1.0 SD A:CSS347 2.6 88.8 1.0 FE6 A:FS2601 3.1 137.2 1.0 FE5 A:FS2601 3.3 106.8 1.0 CD A:GLU434 3.4 79.5 1.0 CG A:GLU434 3.5 69.6 1.0 FE7 A:FS2601 3.6 105.9 1.0 CB A:CSS347 3.7 76.1 1.0 SG A:CSS347 3.9 76.7 1.0 S5 A:FS2601 4.4 108.2 1.0 NE2 A:HIS193 4.5 80.5 1.0 CE1 A:HIS193 4.5 80.2 1.0 ND2 A:ASN260 4.5 74.6 1.0 CB A:GLU434 4.5 65.8 1.0 SG A:CYS375 4.5 82.5 1.0 OE1 A:GLU434 4.6 83.4 1.0 SG A:CYS400 4.7 74.4 1.0 NZ A:LYS436 4.9 70.9 1.0 CA A:CSS347 4.9 75.0 1.0

Iron binding site 5 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:66.1 occ:1.00 FE1 A:SF4602 0.0 66.1 1.0 SG A:CYS85 2.3 51.7 1.0 S3 A:SF4602 2.3 47.0 1.0 S2 A:SF4602 2.3 54.0 1.0 S4 A:SF4602 2.3 51.6 1.0 FE2 A:SF4602 2.7 64.9 1.0 FE4 A:SF4602 2.7 57.9 1.0 FE3 A:SF4602 2.7 66.9 1.0 CB A:CYS85 3.3 46.6 1.0 S1 A:SF4602 3.9 55.0 1.0 N A:CYS85 3.9 49.3 1.0 CA A:GLY83 4.0 51.6 1.0 CA A:CYS85 4.2 48.3 1.0 N A:VAL84 4.5 47.5 1.0 C A:GLY83 4.5 49.5 1.0 CE A:LYS87 4.6 55.2 1.0 SG A:CYS79 4.7 51.0 1.0 SG A:CYS67 4.7 54.2 1.0 SG A:CYS70 4.7 55.3 1.0 CB A:LYS87 4.8 51.0 1.0 C A:CYS85 5.0 47.7 1.0

Iron binding site 6 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:64.9 occ:1.00 FE2 A:SF4602 0.0 64.9 1.0 S4 A:SF4602 2.3 51.6 1.0 SG A:CYS70 2.3 55.3 1.0 S1 A:SF4602 2.3 55.0 1.0 S3 A:SF4602 2.3 47.0 1.0 FE3 A:SF4602 2.7 66.9 1.0 FE1 A:SF4602 2.7 66.1 1.0 FE4 A:SF4602 2.7 57.9 1.0 CB A:CYS70 3.1 43.5 1.0 S2 A:SF4602 3.9 54.0 1.0 N A:CYS70 3.9 45.5 1.0 OG1 A:THR73 3.9 47.6 1.0 CA A:CYS70 4.0 46.1 1.0 C A:CYS70 4.4 46.8 1.0 O A:CYS70 4.4 46.5 1.0 SG A:CYS85 4.5 51.7 1.0 CG2 A:THR135 4.5 48.4 1.0 N A:THR73 4.5 46.6 1.0 CG A:GLN69 4.6 44.5 1.0 CB A:CYS85 4.7 46.6 1.0 NE2 A:GLN72 4.7 43.6 1.0 CB A:GLN72 4.7 48.0 1.0 SG A:CYS67 4.8 54.2 1.0 OG1 A:THR135 4.9 44.8 1.0 CA A:THR73 4.9 46.4 1.0 C A:GLN69 4.9 45.6 1.0 SG A:CYS79 5.0 51.0 1.0 CB A:THR73 5.0 47.7 1.0 N A:GLN72 5.0 46.3 1.0

Iron binding site 7 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:66.9 occ:1.00 FE3 A:SF4602 0.0 66.9 1.0 SG A:CYS67 2.2 54.2 1.0 S1 A:SF4602 2.3 55.0 1.0 S2 A:SF4602 2.3 54.0 1.0 S4 A:SF4602 2.3 51.6 1.0 FE2 A:SF4602 2.7 64.9 1.0 FE4 A:SF4602 2.7 57.9 1.0 FE1 A:SF4602 2.7 66.1 1.0 CB A:CYS67 3.3 52.8 1.0 CG A:GLN69 3.8 44.5 1.0 S3 A:SF4602 3.9 47.0 1.0 C A:CYS67 4.2 53.3 1.0 O A:CYS67 4.2 53.4 1.0 NZ A:LYS87 4.3 52.1 1.0 CA A:CYS67 4.4 53.3 1.0 CE A:LYS87 4.4 55.2 1.0 N A:GLN69 4.4 48.2 1.0 CD A:GLN69 4.5 47.3 1.0 N A:TYR68 4.6 53.9 1.0 OG1 A:THR73 4.6 47.6 1.0 NE2 A:GLN69 4.7 47.9 1.0 SG A:CYS85 4.8 51.7 1.0 N A:CYS70 4.9 45.5 1.0 SG A:CYS70 4.9 55.3 1.0 CB A:GLN69 4.9 45.6 1.0

Iron binding site 8 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:57.9 occ:1.00 FE4 A:SF4602 0.0 57.9 1.0 S2 A:SF4602 2.3 54.0 1.0 S1 A:SF4602 2.3 55.0 1.0 S3 A:SF4602 2.3 47.0 1.0 SG A:CYS79 2.4 51.0 1.0 FE3 A:SF4602 2.7 66.9 1.0 FE1 A:SF4602 2.7 66.1 1.0 FE2 A:SF4602 2.7 64.9 1.0 CB A:CYS79 3.2 53.0 1.0 OG1 A:THR73 3.3 47.6 1.0 O A:CYS67 3.7 53.4 1.0 S4 A:SF4602 3.9 51.6 1.0 CA A:THR73 4.1 46.4 1.0 CB A:THR73 4.3 47.7 1.0 CA A:GLY83 4.3 51.6 1.0 SG A:CYS67 4.4 54.2 1.0 N A:VAL84 4.5 47.5 1.0 C A:CYS67 4.5 53.3 1.0 CB A:CYS67 4.5 52.8 1.0 CA A:CYS79 4.5 52.7 1.0 N A:THR73 4.6 46.6 1.0 SG A:CYS70 4.6 55.3 1.0 N A:CYS79 4.7 50.7 1.0 SG A:CYS85 4.9 51.7 1.0 C A:GLY83 4.9 49.5 1.0 CG2 A:THR73 5.0 49.6 1.0

Iron binding site 9 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe603 b:157.1 occ:1.00 SG A:CYS8 2.1 70.8 1.0 SG A:CYS38 2.2 72.1 1.0 SG A:CYS41 2.5 67.6 1.0 SG A:CYS5 2.5 68.9 1.0 CB A:CYS38 3.1 72.4 1.0 CB A:CYS8 3.3 73.8 1.0 CB A:CYS5 3.4 73.2 1.0 CB A:CYS41 3.9 66.7 1.0 N A:CYS8 3.9 72.0 1.0 N A:CYS41 4.0 72.7 1.0 CA A:CYS8 4.1 73.6 1.0 CG1 A:VAL43 4.1 70.1 1.0 CB A:TYR10 4.1 76.2 1.0 CA A:CYS41 4.5 70.8 1.0 C A:CYS8 4.5 77.4 1.0 CB A:VAL40 4.5 68.2 1.0 N A:TYR10 4.6 74.4 1.0 CA A:CYS38 4.6 73.5 1.0 CZ A:PHE48 4.8 75.0 1.0 N A:ASP9 4.8 75.6 1.0 CA A:CYS5 4.8 72.8 1.0 CB A:VAL7 4.9 61.3 1.0 C A:VAL40 4.9 73.7 1.0 C A:VAL7 5.0 66.6 1.0

Iron binding site 10 out of 36 in the Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Class III Hybrid Cluster Protein (Hcp) From Methanothermobacter Marburgensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:74.6 occ:1.00 FE5 B:FS2601 0.0 74.6 1.0 O1 B:FS2601 1.7 69.3 1.0 SG B:CYS375 2.1 55.8 1.0 S5 B:FS2601 2.3 57.8 1.0 S6 B:FS2601 2.3 70.0 1.0 FE6 B:FS2601 2.7 83.7 1.0 FE8 B:FS2601 3.3 90.4 1.0 O8 B:FS2601 3.5 66.6 1.0 FE7 B:FS2601 3.6 67.8 1.0 CB B:CYS375 3.6 49.6 1.0 CB B:CSS347 3.7 56.6 1.0 O9 B:FS2601 3.8 68.5 1.0 N B:CYS375 3.9 51.6 1.0 CA B:CSS347 3.9 53.4 1.0 SD B:CSS347 4.0 60.8 1.0 CG B:GLU217 4.3 48.1 1.0 CA B:CYS375 4.4 50.0 1.0 N B:ASP348 4.4 56.0 1.0 CB B:ALA374 4.4 50.9 1.0 CD1 B:TRP241 4.4 48.9 1.0 SG B:CSS347 4.4 66.7 1.0 OE2 B:GLU217 4.5 50.3 1.0 NE2 B:HIS193 4.7 57.3 1.0 C B:CSS347 4.7 54.8 1.0 NE1 B:TRP241 4.8 51.7 1.0 CE1 B:HIS193 4.9 56.0 1.0 CD B:GLU217 4.9 47.0 1.0 SG B:CYS261 4.9 54.9 1.0 N B:CSS347 4.9 53.4 1.0 C B:ALA374 5.0 52.6 1.0

T.Fujishiro, K.Takaoka. The Homodimeric Architecture of Type III Hybrid Cluster Protein To Be Published.