Iron in PDB 7emz: Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi W199F Variant

The structure of Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi W199F Variant, PDB code: 7emz was solved by T.Mori, I.Abe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.69 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.915, 81.112, 151.78, 90, 90, 90
R / Rfree (%)	19.3 / 24.8

The binding sites of Iron atom in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi W199F Variant (pdb code 7emz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi W199F Variant, PDB code: 7emz:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi W199F Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi W199F Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe303 b:16.2 occ:1.00 O2' A:OGA301 2.1 20.4 1.0 OD1 A:ASP137 2.1 21.4 1.0 NE2 A:HIS135 2.1 21.4 1.0 O A:HOH438 2.1 22.7 1.0 O1 A:OGA301 2.1 22.4 1.0 NE2 A:HIS250 2.1 19.9 1.0 C2 A:OGA301 2.8 21.1 1.0 C1 A:OGA301 2.8 22.7 1.0 CD2 A:HIS250 2.9 19.4 1.0 CD2 A:HIS135 2.9 20.5 1.0 CG A:ASP137 3.0 22.0 1.0 CE1 A:HIS135 3.2 25.1 1.0 OD2 A:ASP137 3.2 21.1 1.0 CE1 A:HIS250 3.3 22.7 1.0 O2 A:OGA301 4.0 23.4 1.0 N1 A:OGA301 4.1 24.3 1.0 CG A:HIS250 4.1 24.4 1.0 CG A:HIS135 4.1 21.8 1.0 ND1 A:HIS135 4.2 25.9 1.0 ND1 A:HIS250 4.3 20.9 1.0 OG A:SER167 4.3 22.3 1.0 CAF A:H3X302 4.3 28.6 0.6 CB A:ASP137 4.4 24.3 1.0 NH1 A:ARG271 4.5 17.6 1.0 CAZ A:H3X302 4.7 38.1 0.6 C4 A:OGA301 4.8 24.7 1.0 CBB A:H3X302 4.8 35.8 0.6 OBA A:H3X302 4.9 34.2 0.6 CA A:ASP137 4.9 21.3 1.0 N A:ASP137 5.0 19.9 1.0

Iron binding site 2 out of 2 in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi W199F Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi W199F Variant within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:14.7 occ:1.00 O1 B:OGA301 2.0 16.1 1.0 NE2 B:HIS250 2.0 21.2 1.0 OD1 B:ASP137 2.1 19.8 1.0 O2' B:OGA301 2.1 23.6 1.0 NE2 B:HIS135 2.2 17.6 1.0 O B:HOH487 2.4 18.9 1.0 C1 B:OGA301 2.7 19.6 1.0 C2 B:OGA301 2.7 17.9 1.0 CD2 B:HIS250 2.8 15.7 1.0 CD2 B:HIS135 3.0 15.8 1.0 CG B:ASP137 3.0 16.8 1.0 CE1 B:HIS250 3.2 16.1 1.0 CE1 B:HIS135 3.3 14.8 1.0 OD2 B:ASP137 3.3 15.5 1.0 O2 B:OGA301 3.9 16.9 1.0 O B:HOH536 3.9 39.1 1.0 N1 B:OGA301 4.1 17.8 1.0 CG B:HIS250 4.1 16.1 1.0 ND1 B:HIS250 4.2 15.9 1.0 CG B:HIS135 4.2 16.4 1.0 ND1 B:HIS135 4.3 20.0 1.0 OG B:SER167 4.4 18.1 1.0 CB B:ASP137 4.4 18.1 1.0 NH1 B:ARG271 4.5 17.3 1.0 C4 B:OGA301 4.8 21.0 1.0 CA B:ASP137 4.8 13.6 1.0 NH2 B:ARG118 4.9 24.4 1.0 N B:ASP137 4.9 16.1 1.0

T.Mori, I.Abe. Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi W199F Variant To Be Published.