Iron in PDB 7enb: Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi with Different Conformation

The structure of Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi with Different Conformation, PDB code: 7enb was solved by T.Mori, I.Abe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.62 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.747, 79.298, 154.524, 90, 90, 90
R / Rfree (%)	17.8 / 23.5

The binding sites of Iron atom in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi with Different Conformation (pdb code 7enb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi with Different Conformation, PDB code: 7enb:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi with Different Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi with Different Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe403 b:17.4 occ:1.00 O2' A:OGA402 2.0 18.5 1.0 OD1 A:ASP137 2.0 20.9 1.0 NE2 A:HIS250 2.0 23.5 1.0 O1 A:OGA402 2.1 21.0 1.0 NE2 A:HIS135 2.1 21.5 1.0 O A:HOH520 2.1 20.4 1.0 C2 A:OGA402 2.7 20.5 1.0 C1 A:OGA402 2.8 22.7 1.0 CD2 A:HIS250 2.9 21.5 1.0 CG A:ASP137 2.9 20.8 1.0 CE1 A:HIS135 3.0 22.4 1.0 CE1 A:HIS250 3.1 20.4 1.0 CD2 A:HIS135 3.1 22.0 1.0 OD2 A:ASP137 3.1 19.6 1.0 O2 A:OGA402 4.0 21.6 1.0 N1 A:OGA402 4.0 24.2 1.0 CG A:HIS250 4.1 22.9 1.0 ND1 A:HIS250 4.2 19.3 1.0 ND1 A:HIS135 4.2 22.1 1.0 OG A:SER167 4.2 21.8 1.0 CG A:HIS135 4.2 22.2 1.0 CAF A:H3X401 4.3 22.4 1.0 CB A:ASP137 4.3 21.9 1.0 NH1 A:ARG271 4.4 21.5 1.0 C4 A:OGA402 4.8 21.8 1.0 CA A:ASP137 4.8 20.7 1.0 CBB A:H3X401 4.8 22.7 1.0 N A:ASP137 4.9 20.5 1.0

Iron binding site 2 out of 2 in the Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi with Different Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi with Different Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:18.9 occ:1.00 O1 B:OGA301 1.9 21.5 1.0 NE2 B:HIS250 2.0 20.3 1.0 NE2 B:HIS135 2.0 20.7 1.0 OD1 B:ASP137 2.1 22.7 1.0 O2' B:OGA301 2.2 21.2 1.0 O B:HOH429 2.2 19.9 1.0 C1 B:OGA301 2.7 21.6 1.0 C2 B:OGA301 2.8 18.6 1.0 CE1 B:HIS135 2.9 19.5 1.0 CD2 B:HIS250 2.9 18.0 1.0 CG B:ASP137 3.0 21.3 1.0 CE1 B:HIS250 3.1 18.1 1.0 CD2 B:HIS135 3.1 19.8 1.0 OD2 B:ASP137 3.2 24.1 1.0 O2 B:OGA301 3.9 17.5 1.0 ND1 B:HIS135 4.0 20.2 1.0 CG B:HIS250 4.1 19.9 1.0 N1 B:OGA301 4.1 19.9 1.0 ND1 B:HIS250 4.1 16.7 1.0 CG B:HIS135 4.2 20.1 1.0 OG B:SER167 4.2 22.6 1.0 CB B:ASP137 4.4 20.6 1.0 NH1 B:ARG271 4.4 24.5 1.0 CA B:ASP137 4.8 18.7 1.0 N B:ASP137 4.8 20.4 1.0 C4 B:OGA301 4.8 23.1 1.0 CB B:SER167 5.0 16.8 1.0

T.Mori, I.Abe. Iron and Alpha-Ketoglutarate-Dependent Endoperoxidase Nvfi with Different Conformation To Be Published.