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Iron in PDB 7eu3: Chloroplast Ndh Complex

Iron Binding Sites:

The binding sites of Iron atom in the Chloroplast Ndh Complex (pdb code 7eu3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Chloroplast Ndh Complex, PDB code: 7eu3:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7eu3

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Iron binding site 1 out of 4 in the Chloroplast Ndh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Chloroplast Ndh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
8:Fe201

b:106.2
occ:1.00
 FE1 8:SF4201 0.0 106.2 1.0
S3 8:SF4201 2.1 106.2 1.0
S2 8:SF4201 2.1 106.2 1.0
S4 8:SF4201 2.1 106.2 1.0
FE3 8:SF4201 3.0 106.2 1.0
FE4 8:SF4201 3.0 106.2 1.0
FE2 8:SF4201 3.0 106.2 1.0
C 8:GLY130 3.2 84.3 1.0
N 8:GLY133 3.3 78.1 1.0
N 8:GLU131 3.3 78.6 1.0
N 8:CYS132 3.4 78.2 1.0
O 8:GLY130 3.5 84.3 1.0
C 8:GLU131 3.6 78.6 1.0
S1 8:SF4201 3.7 106.2 1.0
N 8:GLY130 3.8 84.3 1.0
CA 8:GLY130 3.8 84.3 1.0
SG 8:CYS132 3.9 78.2 1.0
CA 8:GLU131 4.0 78.6 1.0
CA 8:GLY133 4.0 78.1 1.0
O 8:GLU131 4.0 78.6 1.0
SG 8:CYS168 4.2 83.2 1.0
C 8:CYS132 4.2 78.2 1.0
CA 8:CYS132 4.3 78.2 1.0
CB 8:CYS132 4.6 78.2 1.0
CB 8:CYS168 4.9 83.2 1.0
C 8:GLY129 5.0 87.0 1.0
N 8:THR134 5.0 76.0 1.0

Iron binding site 2 out of 4 in 7eu3

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Iron binding site 2 out of 4 in the Chloroplast Ndh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Chloroplast Ndh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
8:Fe201

b:106.2
occ:1.00
 FE2 8:SF4201 0.0 106.2 1.0
S4 8:SF4201 2.1 106.2 1.0
S3 8:SF4201 2.1 106.2 1.0
S1 8:SF4201 2.1 106.2 1.0
N 8:GLY128 2.8 83.6 1.0
C 8:GLY128 3.0 83.6 1.0
FE3 8:SF4201 3.0 106.2 1.0
FE1 8:SF4201 3.0 106.2 1.0
FE4 8:SF4201 3.0 106.2 1.0
CA 8:GLY128 3.1 83.6 1.0
O 8:GLY128 3.2 83.6 1.0
O 8:CYS126 3.3 75.9 1.0
N 8:GLY129 3.5 87.0 1.0
N 8:GLY130 3.5 84.3 1.0
C 8:SER127 3.6 75.4 1.0
S2 8:SF4201 3.7 106.2 1.0
C 8:CYS126 3.8 75.9 1.0
CA 8:GLY130 3.9 84.3 1.0
C 8:GLY129 4.0 87.0 1.0
N 8:SER127 4.2 75.4 1.0
O 8:SER127 4.3 75.4 1.0
CA 8:GLY129 4.3 87.0 1.0
CA 8:SER127 4.3 75.4 1.0
C 8:GLY130 4.5 84.3 1.0
N 8:GLU131 4.7 78.6 1.0
CA 8:CYS126 4.7 75.9 1.0
OH 8:TYR116 4.8 73.9 1.0
CB 8:SER127 4.8 75.4 1.0
O 8:GLY129 4.8 87.0 1.0

Iron binding site 3 out of 4 in 7eu3

Go back to Iron Binding Sites List in 7eu3
Iron binding site 3 out of 4 in the Chloroplast Ndh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Chloroplast Ndh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
8:Fe201

b:106.2
occ:1.00
 FE3 8:SF4201 0.0 106.2 1.0
S1 8:SF4201 2.1 106.2 1.0
S4 8:SF4201 2.1 106.2 1.0
S2 8:SF4201 2.1 106.2 1.0
SG 8:CYS132 2.9 78.2 1.0
FE2 8:SF4201 3.0 106.2 1.0
FE1 8:SF4201 3.0 106.2 1.0
FE4 8:SF4201 3.0 106.2 1.0
N 8:CYS126 3.4 75.9 1.0
O 8:CYS126 3.5 75.9 1.0
CA 8:CYS126 3.5 75.9 1.0
S3 8:SF4201 3.7 106.2 1.0
C 8:CYS126 3.7 75.9 1.0
C 8:ASN125 3.7 73.0 1.0
CG2 8:THR134 3.9 76.0 1.0
CE1 8:TYR116 4.1 73.9 1.0
O 8:ASN125 4.1 73.0 1.0
CA 8:ASN125 4.3 73.0 1.0
CB 8:ASN125 4.4 73.0 1.0
N 8:GLY133 4.5 78.1 1.0
OH 8:TYR116 4.5 73.9 1.0
CB 8:CYS132 4.5 78.2 1.0
N 8:THR134 4.6 76.0 1.0
N 8:SER127 4.6 75.4 1.0
CZ 8:TYR116 4.7 73.9 1.0
N 8:GLY128 4.7 83.6 1.0
N 8:CYS132 4.8 78.2 1.0
CD1 8:TYR116 4.9 73.9 1.0
CB 8:CYS126 5.0 75.9 1.0

Iron binding site 4 out of 4 in 7eu3

Go back to Iron Binding Sites List in 7eu3
Iron binding site 4 out of 4 in the Chloroplast Ndh Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Chloroplast Ndh Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
8:Fe201

b:106.2
occ:1.00
 FE4 8:SF4201 0.0 106.2 1.0
S1 8:SF4201 2.1 106.2 1.0
S2 8:SF4201 2.1 106.2 1.0
S3 8:SF4201 2.1 106.2 1.0
FE1 8:SF4201 3.0 106.2 1.0
CB 8:CYS168 3.0 83.2 1.0
FE3 8:SF4201 3.0 106.2 1.0
FE2 8:SF4201 3.0 106.2 1.0
SG 8:CYS168 3.4 83.2 1.0
SG 8:CYS135 3.5 75.9 1.0
OH 8:TYR116 3.7 73.9 1.0
S4 8:SF4201 3.7 106.2 1.0
CE1 8:TYR116 4.1 73.9 1.0
N 8:GLY129 4.2 87.0 1.0
CA 8:GLY128 4.3 83.6 1.0
CZ 8:TYR116 4.4 73.9 1.0
N 8:GLY128 4.5 83.6 1.0
CA 8:CYS168 4.5 83.2 1.0
C 8:GLY128 4.5 83.6 1.0
N 8:GLY130 4.8 84.3 1.0
CD 8:ARG105 4.9 79.4 1.0
CB 8:CYS135 4.9 75.9 1.0
NE 8:ARG105 5.0 79.4 1.0

Reference:

L.Shen, K.Tang, W.Wang, C.Wang, H.Wu, Z.Mao, S.An, S.Chang, T.Kuang, J.R.Shen, G.Han, X.Zhang. Architecture of the Chloroplast Psi-Ndh Supercomplex in Hordeum Vulgare. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 34879391
DOI: 10.1038/S41586-021-04277-6
Page generated: Thu Aug 8 05:24:20 2024

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