Iron in PDB 7ewk: Barley Photosystem I-Lhci-LHCA6 Supercomplex

All present enzymatic activity of Barley Photosystem I-Lhci-LHCA6 Supercomplex:
1.97.1.12;

The structure of Barley Photosystem I-Lhci-LHCA6 Supercomplex also contains other interesting chemical elements:

Magnesium

(Mg)

149 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Barley Photosystem I-Lhci-LHCA6 Supercomplex (pdb code 7ewk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Barley Photosystem I-Lhci-LHCA6 Supercomplex, PDB code: 7ewk:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe802 b:92.0 occ:1.00 FE1 B:SF4802 0.0 92.0 1.0 S2 B:SF4802 2.1 92.0 1.0 S4 B:SF4802 2.1 92.0 1.0 S3 B:SF4802 2.1 92.0 1.0 CB A:CYS573 2.9 78.0 1.0 SG A:CYS573 2.9 78.0 1.0 FE4 B:SF4802 3.0 92.0 1.0 FE3 B:SF4802 3.0 92.0 1.0 FE2 B:SF4802 3.0 92.0 1.0 SG A:CYS582 3.6 79.1 1.0 S1 B:SF4802 3.6 92.0 1.0 CA A:CYS582 4.1 79.1 1.0 CB A:CYS582 4.1 79.1 1.0 CA A:CYS573 4.4 78.0 1.0 NH2 A:ARG723 4.6 75.2 1.0 N A:CYS573 4.7 78.0 1.0 N A:CYS582 4.8 79.1 1.0 O A:PRO572 4.9 79.9 1.0 O A:THR581 4.9 80.0 1.0 C A:PRO572 5.0 79.9 1.0

Iron binding site 2 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe802 b:92.0 occ:1.00 FE2 B:SF4802 0.0 92.0 1.0 S4 B:SF4802 2.1 92.0 1.0 S3 B:SF4802 2.1 92.0 1.0 S1 B:SF4802 2.1 92.0 1.0 CB B:CYS568 2.9 88.4 1.0 FE1 B:SF4802 3.0 92.0 1.0 FE3 B:SF4802 3.0 92.0 1.0 FE4 B:SF4802 3.0 92.0 1.0 CA B:CYS568 3.6 88.4 1.0 SG B:CYS568 3.6 88.4 1.0 S2 B:SF4802 3.7 92.0 1.0 CD1 A:ILE719 3.7 79.0 1.0 N B:CYS568 3.9 88.4 1.0 CZ3 B:TRP667 4.6 77.2 1.0 CG1 A:ILE719 4.7 79.0 1.0 C B:THR567 4.7 86.0 1.0 CG2 A:ILE719 4.9 79.0 1.0

Iron binding site 3 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe802 b:92.0 occ:1.00 FE3 B:SF4802 0.0 92.0 1.0 S1 B:SF4802 2.1 92.0 1.0 S2 B:SF4802 2.1 92.0 1.0 S4 B:SF4802 2.1 92.0 1.0 SG A:CYS582 3.0 79.1 1.0 FE1 B:SF4802 3.0 92.0 1.0 FE2 B:SF4802 3.0 92.0 1.0 FE4 B:SF4802 3.0 92.0 1.0 S3 B:SF4802 3.7 92.0 1.0 CD1 B:ILE702 4.2 83.9 1.0 SG B:CYS559 4.5 84.2 1.0 CB A:CYS582 4.5 79.1 1.0 CG2 B:ILE702 4.7 83.9 1.0 CB B:CYS559 4.7 84.2 1.0 CB B:CYS568 4.7 88.4 1.0 NH2 B:ARG706 4.7 83.7 1.0 CZ3 B:TRP667 4.9 77.2 1.0 CE3 B:TRP667 4.9 77.2 1.0

Iron binding site 4 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe802 b:92.0 occ:1.00 FE4 B:SF4802 0.0 92.0 1.0 S2 B:SF4802 2.1 92.0 1.0 S1 B:SF4802 2.1 92.0 1.0 S3 B:SF4802 2.1 92.0 1.0 FE1 B:SF4802 3.0 92.0 1.0 SG B:CYS559 3.0 84.2 1.0 FE2 B:SF4802 3.0 92.0 1.0 FE3 B:SF4802 3.0 92.0 1.0 S4 B:SF4802 3.7 92.0 1.0 SG A:CYS573 3.9 78.0 1.0 CB B:CYS559 4.0 84.2 1.0 N B:PRO562 4.2 83.0 1.0 C B:GLY561 4.2 84.2 1.0 CD A:PRO576 4.3 80.5 1.0 O B:GLY561 4.3 84.2 1.0 CA B:PRO562 4.4 83.0 1.0 CB B:PRO562 4.4 83.0 1.0 N A:PRO576 4.5 80.5 1.0 CA A:GLY575 4.6 80.4 1.0 C A:GLY575 4.7 80.4 1.0 CA B:GLY561 4.7 84.2 1.0 CD B:PRO562 4.7 83.0 1.0 N B:GLY561 4.8 84.2 1.0 CB A:PRO576 4.9 80.5 1.0

Iron binding site 5 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:107.4 occ:1.00 FE1 C:SF4101 0.0 107.4 1.0 S2 C:SF4101 2.1 107.4 1.0 S3 C:SF4101 2.1 107.4 1.0 S4 C:SF4101 2.1 107.4 1.0 FE3 C:SF4101 3.0 107.4 1.0 FE4 C:SF4101 3.0 107.4 1.0 FE2 C:SF4101 3.0 107.4 1.0 SG C:CYS51 3.0 82.9 1.0 O C:CYS51 3.2 82.9 1.0 N C:CYS51 3.6 82.9 1.0 S1 C:SF4101 3.7 107.4 1.0 CD C:PRO22 3.7 89.7 1.0 CG C:PRO22 3.7 89.7 1.0 N C:GLY50 3.8 82.8 1.0 C C:CYS51 4.1 82.9 1.0 CA C:CYS51 4.2 82.9 1.0 CB C:CYS51 4.2 82.9 1.0 N C:VAL49 4.3 87.7 1.0 C C:GLY50 4.3 82.8 1.0 CA C:GLY50 4.5 82.8 1.0 CB C:VAL49 4.6 87.7 1.0 CA C:VAL49 4.8 87.7 1.0 C C:VAL49 4.8 87.7 1.0 SG C:CYS48 5.0 92.6 1.0

Iron binding site 6 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:107.4 occ:1.00 FE2 C:SF4101 0.0 107.4 1.0 S4 C:SF4101 2.1 107.4 1.0 S1 C:SF4101 2.1 107.4 1.0 S3 C:SF4101 2.1 107.4 1.0 FE3 C:SF4101 3.0 107.4 1.0 FE1 C:SF4101 3.0 107.4 1.0 SG C:CYS21 3.0 89.6 1.0 FE4 C:SF4101 3.0 107.4 1.0 CD C:PRO22 3.3 89.7 1.0 CA C:CYS21 3.5 89.6 1.0 CB C:CYS21 3.5 89.6 1.0 S2 C:SF4101 3.7 107.4 1.0 CB C:CYS54 3.8 86.0 1.0 N C:PRO22 4.2 89.7 1.0 C C:CYS21 4.3 89.6 1.0 CG C:PRO22 4.4 89.7 1.0 SG C:CYS54 4.6 86.0 1.0 N C:CYS21 4.6 89.6 1.0 CB C:VAL25 4.7 91.4 1.0 CG2 C:VAL25 4.7 91.4 1.0 CA C:CYS54 4.8 86.0 1.0 N C:CYS54 4.9 86.0 1.0 O C:ALA20 4.9 88.5 1.0 O C:CYS51 5.0 82.9 1.0

Iron binding site 7 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:107.4 occ:1.00 FE3 C:SF4101 0.0 107.4 1.0 S1 C:SF4101 2.1 107.4 1.0 S2 C:SF4101 2.1 107.4 1.0 S4 C:SF4101 2.1 107.4 1.0 O C:CYS51 2.9 82.9 1.0 SG C:CYS54 2.9 86.0 1.0 FE1 C:SF4101 3.0 107.4 1.0 FE2 C:SF4101 3.0 107.4 1.0 FE4 C:SF4101 3.0 107.4 1.0 CB C:CYS54 3.2 86.0 1.0 S3 C:SF4101 3.7 107.4 1.0 CG2 C:VAL67 3.9 87.7 1.0 C C:CYS51 4.1 82.9 1.0 N C:CYS54 4.1 86.0 1.0 CA C:CYS54 4.3 86.0 1.0 CG1 C:VAL67 4.7 87.7 1.0 CA C:LYS52 4.7 83.5 1.0 C C:LYS52 4.8 83.5 1.0 N C:LYS52 4.9 83.5 1.0 CB C:VAL67 4.9 87.7 1.0 SG C:CYS51 4.9 82.9 1.0 N C:CYS51 4.9 82.9 1.0 N C:ARG53 5.0 86.8 1.0 N C:GLU55 5.0 87.0 1.0

Iron binding site 8 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:107.4 occ:1.00 FE4 C:SF4101 0.0 107.4 1.0 S1 C:SF4101 2.1 107.4 1.0 S3 C:SF4101 2.1 107.4 1.0 S2 C:SF4101 2.1 107.4 1.0 SG C:CYS48 2.9 92.6 1.0 FE1 C:SF4101 3.0 107.4 1.0 FE3 C:SF4101 3.0 107.4 1.0 FE2 C:SF4101 3.0 107.4 1.0 CB C:CYS48 3.6 92.6 1.0 S4 C:SF4101 3.7 107.4 1.0 CA C:CYS48 3.8 92.6 1.0 CG2 C:VAL25 3.8 91.4 1.0 CB C:VAL25 4.1 91.4 1.0 CG1 C:VAL25 4.2 91.4 1.0 N C:VAL49 4.3 87.7 1.0 C C:CYS48 4.4 92.6 1.0 N C:GLY50 4.7 82.8 1.0 CG2 C:VAL5 4.8 90.4 1.0 SG C:CYS21 4.8 89.6 1.0

Iron binding site 9 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:107.4 occ:1.00 FE1 C:SF4102 0.0 107.4 1.0 S2 C:SF4102 2.1 107.4 1.0 S3 C:SF4102 2.1 107.4 1.0 S4 C:SF4102 2.1 107.4 1.0 FE4 C:SF4102 3.0 107.4 1.0 FE3 C:SF4102 3.0 107.4 1.0 FE2 C:SF4102 3.0 107.4 1.0 CB C:CYS58 3.0 84.9 1.0 CA C:CYS58 3.2 84.9 1.0 SG C:CYS58 3.2 84.9 1.0 S1 C:SF4102 3.7 107.4 1.0 SG C:CYS14 3.8 84.9 1.0 CD C:PRO59 3.9 86.5 1.0 C C:CYS58 4.1 84.9 1.0 N C:CYS58 4.2 84.9 1.0 N C:PRO59 4.3 86.5 1.0 CG2 C:THR60 4.6 87.3 1.0

Iron binding site 10 out of 12 in the Barley Photosystem I-Lhci-LHCA6 Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Barley Photosystem I-Lhci-LHCA6 Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:107.4 occ:1.00 FE2 C:SF4102 0.0 107.4 1.0 S1 C:SF4102 2.1 107.4 1.0 S4 C:SF4102 2.1 107.4 1.0 S3 C:SF4102 2.1 107.4 1.0 FE3 C:SF4102 3.0 107.4 1.0 FE1 C:SF4102 3.0 107.4 1.0 FE4 C:SF4102 3.0 107.4 1.0 SG C:CYS17 3.1 89.5 1.0 CB C:CYS17 3.5 89.5 1.0 S2 C:SF4102 3.7 107.4 1.0 CG1 C:VAL65 4.2 86.1 1.0 N C:CYS17 4.4 89.5 1.0 CA C:CYS17 4.6 89.5 1.0 CB C:VAL65 4.7 86.1 1.0 CE C:MET28 4.7 87.8 1.0 CB C:ALA40 4.7 89.6 1.0 CB C:CYS58 4.8 84.9 1.0

L.Shen, K.Tang, W.Wang, C.Wang, H.Wu, Z.Mao, S.An, S.Chang, T.Kuang, J.R.Shen, G.Han, X.Zhang. Architecture of the Chloroplast Psi-Ndh Supercomplex in Hordeum Vulgare. Nature V. 601 649 2022.
ISSN: ESSN 1476-4687
PubMed: 34879391
DOI: 10.1038/S41586-021-04277-6