Iron in PDB 7jor: Neutron Structure of Ferric Dehaloperoxidase B
Iron Binding Sites:
The binding sites of Iron atom in the Neutron Structure of Ferric Dehaloperoxidase B
(pdb code 7jor). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Neutron Structure of Ferric Dehaloperoxidase B, PDB code: 7jor:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 7jor
Go back to
Iron Binding Sites List in 7jor
Iron binding site 1 out
of 2 in the Neutron Structure of Ferric Dehaloperoxidase B
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Neutron Structure of Ferric Dehaloperoxidase B within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:19.8
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
19.8
|
1.0
|
ND
|
A:HEM201
|
1.9
|
20.7
|
1.0
|
NA
|
A:HEM201
|
2.0
|
21.2
|
1.0
|
NC
|
A:HEM201
|
2.1
|
18.4
|
1.0
|
NB
|
A:HEM201
|
2.1
|
18.7
|
1.0
|
NE2
|
A:HIS89
|
2.4
|
24.5
|
1.0
|
H12
|
A:PG0202
|
2.5
|
21.8
|
0.7
|
C1D
|
A:HEM201
|
2.8
|
19.1
|
1.0
|
C4D
|
A:HEM201
|
2.8
|
23.3
|
1.0
|
C1A
|
A:HEM201
|
2.9
|
21.1
|
1.0
|
C4A
|
A:HEM201
|
3.0
|
21.8
|
1.0
|
C1B
|
A:HEM201
|
3.0
|
19.5
|
1.0
|
C4C
|
A:HEM201
|
3.0
|
19.9
|
1.0
|
OTT
|
A:PG0202
|
3.0
|
19.0
|
0.7
|
C1
|
A:PG0202
|
3.1
|
18.2
|
0.7
|
C4B
|
A:HEM201
|
3.1
|
19.4
|
1.0
|
DD2
|
A:HIS89
|
3.1
|
27.5
|
1.0
|
C1C
|
A:HEM201
|
3.1
|
18.5
|
1.0
|
CD2
|
A:HIS89
|
3.1
|
22.9
|
1.0
|
CHD
|
A:HEM201
|
3.3
|
20.2
|
1.0
|
CHA
|
A:HEM201
|
3.3
|
23.7
|
1.0
|
H11
|
A:PG0202
|
3.3
|
21.8
|
0.7
|
CHB
|
A:HEM201
|
3.4
|
20.8
|
1.0
|
DG21
|
A:VAL59
|
3.5
|
24.5
|
1.0
|
CHC
|
A:HEM201
|
3.5
|
19.0
|
1.0
|
CE1
|
A:HIS89
|
3.5
|
24.5
|
1.0
|
DG11
|
A:VAL59
|
3.6
|
23.7
|
1.0
|
DTT
|
A:PG0202
|
3.8
|
22.8
|
0.3
|
HTT
|
A:PG0202
|
3.8
|
22.8
|
0.7
|
DE1
|
A:MET86
|
3.8
|
33.3
|
1.0
|
DE1
|
A:HIS89
|
3.9
|
29.4
|
1.0
|
C2D
|
A:HEM201
|
4.1
|
22.7
|
1.0
|
C3D
|
A:HEM201
|
4.1
|
23.1
|
1.0
|
C2A
|
A:HEM201
|
4.1
|
23.5
|
1.0
|
C3A
|
A:HEM201
|
4.2
|
22.7
|
1.0
|
HHD
|
A:HEM201
|
4.2
|
24.2
|
1.0
|
HHA
|
A:HEM201
|
4.2
|
28.5
|
1.0
|
C2B
|
A:HEM201
|
4.2
|
20.7
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
19.2
|
1.0
|
C2C
|
A:HEM201
|
4.3
|
16.7
|
1.0
|
HHB
|
A:HEM201
|
4.3
|
24.9
|
1.0
|
C3B
|
A:HEM201
|
4.3
|
18.6
|
1.0
|
CG
|
A:HIS89
|
4.4
|
23.0
|
1.0
|
C2
|
A:PG0202
|
4.4
|
19.2
|
0.7
|
HHC
|
A:HEM201
|
4.4
|
22.8
|
1.0
|
H22
|
A:PG0202
|
4.5
|
23.0
|
0.7
|
ND1
|
A:HIS89
|
4.5
|
22.3
|
1.0
|
DE1
|
A:HIS55
|
4.6
|
24.3
|
1.0
|
CG2
|
A:VAL59
|
4.6
|
20.4
|
1.0
|
CG1
|
A:VAL59
|
4.6
|
19.8
|
1.0
|
DD11
|
A:LEU92
|
4.6
|
28.0
|
1.0
|
DG13
|
A:VAL59
|
4.8
|
23.7
|
1.0
|
CE
|
A:MET86
|
4.8
|
27.8
|
1.0
|
DG22
|
A:VAL59
|
4.9
|
24.5
|
1.0
|
O1
|
A:PG0202
|
4.9
|
18.8
|
0.7
|
DE2
|
A:PHE35
|
5.0
|
22.2
|
1.0
|
|
Iron binding site 2 out
of 2 in 7jor
Go back to
Iron Binding Sites List in 7jor
Iron binding site 2 out
of 2 in the Neutron Structure of Ferric Dehaloperoxidase B
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Neutron Structure of Ferric Dehaloperoxidase B within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:23.6
occ:0.66
|
FE
|
B:HEM201
|
0.0
|
23.6
|
0.7
|
ND
|
B:HEM201
|
1.9
|
23.9
|
0.7
|
NA
|
B:HEM201
|
2.0
|
25.0
|
0.7
|
NC
|
B:HEM201
|
2.1
|
24.8
|
0.7
|
NE2
|
B:HIS55
|
2.1
|
24.2
|
1.0
|
NB
|
B:HEM201
|
2.1
|
24.2
|
0.7
|
C4D
|
B:HEM201
|
2.9
|
24.8
|
0.7
|
C1D
|
B:HEM201
|
2.9
|
24.8
|
0.7
|
NE2
|
B:HIS89
|
2.9
|
26.0
|
1.0
|
CD2
|
B:HIS55
|
2.9
|
24.9
|
1.0
|
C1A
|
B:HEM201
|
2.9
|
28.2
|
0.7
|
C4C
|
B:HEM201
|
3.0
|
26.1
|
0.7
|
DD2
|
B:HIS55
|
3.0
|
29.9
|
1.0
|
C4A
|
B:HEM201
|
3.0
|
23.7
|
0.7
|
C1B
|
B:HEM201
|
3.1
|
23.9
|
0.7
|
C4B
|
B:HEM201
|
3.1
|
22.3
|
0.7
|
C1C
|
B:HEM201
|
3.1
|
23.4
|
0.7
|
CE1
|
B:HIS55
|
3.1
|
22.6
|
1.0
|
CHA
|
B:HEM201
|
3.3
|
26.5
|
0.7
|
DD2
|
B:HIS89
|
3.3
|
33.6
|
1.0
|
CHD
|
B:HEM201
|
3.4
|
25.5
|
0.7
|
DE1
|
B:HIS55
|
3.4
|
27.1
|
1.0
|
CHB
|
B:HEM201
|
3.5
|
21.7
|
0.7
|
CD2
|
B:HIS89
|
3.5
|
28.0
|
1.0
|
CHC
|
B:HEM201
|
3.5
|
23.8
|
0.7
|
DG22
|
B:VAL59
|
4.0
|
22.4
|
1.0
|
CE1
|
B:HIS89
|
4.1
|
27.6
|
1.0
|
CG
|
B:HIS55
|
4.1
|
24.7
|
1.0
|
C3D
|
B:HEM201
|
4.1
|
27.6
|
0.7
|
C2D
|
B:HEM201
|
4.1
|
27.0
|
0.7
|
C2A
|
B:HEM201
|
4.1
|
28.9
|
0.7
|
ND1
|
B:HIS55
|
4.2
|
21.3
|
1.0
|
C3A
|
B:HEM201
|
4.2
|
25.9
|
0.7
|
HHA
|
B:HEM201
|
4.2
|
31.8
|
0.7
|
C3C
|
B:HEM201
|
4.2
|
27.5
|
0.7
|
HHD
|
B:HEM201
|
4.3
|
30.6
|
0.7
|
C2C
|
B:HEM201
|
4.3
|
25.6
|
0.7
|
C2B
|
B:HEM201
|
4.3
|
22.2
|
0.7
|
C3B
|
B:HEM201
|
4.3
|
22.0
|
0.7
|
HHB
|
B:HEM201
|
4.4
|
26.0
|
0.7
|
HHC
|
B:HEM201
|
4.4
|
28.6
|
0.7
|
DE1
|
B:HIS89
|
4.4
|
33.1
|
1.0
|
DD11
|
B:LEU92
|
4.5
|
35.3
|
1.0
|
DB3
|
B:GLN88
|
4.5
|
39.5
|
1.0
|
DE1
|
B:PHE35
|
4.6
|
28.6
|
1.0
|
DE2
|
B:MET86
|
4.6
|
33.7
|
1.0
|
DG23
|
B:VAL59
|
4.7
|
22.4
|
1.0
|
CG2
|
B:VAL59
|
4.7
|
18.7
|
1.0
|
DG21
|
B:VAL59
|
4.7
|
22.4
|
1.0
|
CG
|
B:HIS89
|
4.8
|
30.4
|
1.0
|
DD1
|
B:HIS55
|
5.0
|
25.5
|
0.7
|
HD1
|
B:HIS55
|
5.0
|
25.5
|
0.3
|
|
Reference:
L.M.Carey,
R.A.Ghiladi,
F.Meilleur,
D.A.A.Myles.
Neutron Structure of Ferric Dehaloperoxidase B To Be Published.
Page generated: Thu Aug 8 05:47:46 2024
|