Iron in PDB 7jrg: Plant Mitochondrial Complex III2 From Vigna Radiata
Enzymatic activity of Plant Mitochondrial Complex III2 From Vigna Radiata
All present enzymatic activity of Plant Mitochondrial Complex III2 From Vigna Radiata:
7.1.1.8;
Other elements in 7jrg:
The structure of Plant Mitochondrial Complex III2 From Vigna Radiata also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Plant Mitochondrial Complex III2 From Vigna Radiata
(pdb code 7jrg). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the
Plant Mitochondrial Complex III2 From Vigna Radiata, PDB code: 7jrg:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
Iron binding site 1 out
of 6 in 7jrg
Go back to
Iron Binding Sites List in 7jrg
Iron binding site 1 out
of 6 in the Plant Mitochondrial Complex III2 From Vigna Radiata
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Plant Mitochondrial Complex III2 From Vigna Radiata within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe402
b:79.1
occ:1.00
|
FE
|
C:HEM402
|
0.0
|
79.1
|
1.0
|
|
NE2
|
C:HIS189
|
2.0
|
27.6
|
1.0
|
|
NA
|
C:HEM402
|
2.0
|
79.1
|
1.0
|
|
NC
|
C:HEM402
|
2.0
|
79.1
|
1.0
|
|
ND
|
C:HEM402
|
2.0
|
79.1
|
1.0
|
|
NB
|
C:HEM402
|
2.0
|
79.1
|
1.0
|
|
NE2
|
C:HIS88
|
2.1
|
29.8
|
1.0
|
|
CE1
|
C:HIS189
|
2.8
|
27.6
|
1.0
|
|
CE1
|
C:HIS88
|
2.9
|
29.8
|
1.0
|
|
C4D
|
C:HEM402
|
3.0
|
79.1
|
1.0
|
|
C1A
|
C:HEM402
|
3.0
|
79.1
|
1.0
|
|
C4C
|
C:HEM402
|
3.0
|
79.1
|
1.0
|
|
C1D
|
C:HEM402
|
3.0
|
79.1
|
1.0
|
|
C1B
|
C:HEM402
|
3.0
|
79.1
|
1.0
|
|
C4B
|
C:HEM402
|
3.0
|
79.1
|
1.0
|
|
C4A
|
C:HEM402
|
3.0
|
79.1
|
1.0
|
|
C1C
|
C:HEM402
|
3.1
|
79.1
|
1.0
|
|
CD2
|
C:HIS189
|
3.1
|
27.6
|
1.0
|
|
CD2
|
C:HIS88
|
3.1
|
29.8
|
1.0
|
|
CHA
|
C:HEM402
|
3.4
|
79.1
|
1.0
|
|
CHD
|
C:HEM402
|
3.4
|
79.1
|
1.0
|
|
CHB
|
C:HEM402
|
3.4
|
79.1
|
1.0
|
|
CHC
|
C:HEM402
|
3.5
|
79.1
|
1.0
|
|
ND1
|
C:HIS189
|
4.0
|
27.6
|
1.0
|
|
ND1
|
C:HIS88
|
4.1
|
29.8
|
1.0
|
|
CG
|
C:HIS189
|
4.2
|
27.6
|
1.0
|
|
C2A
|
C:HEM402
|
4.2
|
79.1
|
1.0
|
|
C3C
|
C:HEM402
|
4.2
|
79.1
|
1.0
|
|
C2B
|
C:HEM402
|
4.2
|
79.1
|
1.0
|
|
C3A
|
C:HEM402
|
4.2
|
79.1
|
1.0
|
|
CG
|
C:HIS88
|
4.2
|
29.8
|
1.0
|
|
C2C
|
C:HEM402
|
4.2
|
79.1
|
1.0
|
|
C3D
|
C:HEM402
|
4.2
|
79.1
|
1.0
|
|
C2D
|
C:HEM402
|
4.2
|
79.1
|
1.0
|
|
C3B
|
C:HEM402
|
4.3
|
79.1
|
1.0
|
|
CA
|
C:GLY137
|
5.0
|
33.2
|
1.0
|
|
Iron binding site 2 out
of 6 in 7jrg
Go back to
Iron Binding Sites List in 7jrg
Iron binding site 2 out
of 6 in the Plant Mitochondrial Complex III2 From Vigna Radiata
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Plant Mitochondrial Complex III2 From Vigna Radiata within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe403
b:79.1
occ:1.00
|
FE
|
C:HEM403
|
0.0
|
79.1
|
1.0
|
|
NA
|
C:HEM403
|
2.0
|
79.1
|
1.0
|
|
NC
|
C:HEM403
|
2.0
|
79.1
|
1.0
|
|
ND
|
C:HEM403
|
2.0
|
79.1
|
1.0
|
|
NE2
|
C:HIS102
|
2.0
|
32.2
|
1.0
|
|
NB
|
C:HEM403
|
2.0
|
79.1
|
1.0
|
|
NE2
|
C:HIS203
|
2.1
|
28.6
|
1.0
|
|
CD2
|
C:HIS102
|
2.8
|
32.2
|
1.0
|
|
CD2
|
C:HIS203
|
2.9
|
28.6
|
1.0
|
|
C4D
|
C:HEM403
|
3.0
|
79.1
|
1.0
|
|
C1A
|
C:HEM403
|
3.0
|
79.1
|
1.0
|
|
C1D
|
C:HEM403
|
3.0
|
79.1
|
1.0
|
|
C4C
|
C:HEM403
|
3.0
|
79.1
|
1.0
|
|
C1B
|
C:HEM403
|
3.0
|
79.1
|
1.0
|
|
C4B
|
C:HEM403
|
3.0
|
79.1
|
1.0
|
|
C4A
|
C:HEM403
|
3.0
|
79.1
|
1.0
|
|
C1C
|
C:HEM403
|
3.0
|
79.1
|
1.0
|
|
CE1
|
C:HIS102
|
3.1
|
32.2
|
1.0
|
|
CE1
|
C:HIS203
|
3.2
|
28.6
|
1.0
|
|
CHA
|
C:HEM403
|
3.4
|
79.1
|
1.0
|
|
CHD
|
C:HEM403
|
3.4
|
79.1
|
1.0
|
|
CHB
|
C:HEM403
|
3.4
|
79.1
|
1.0
|
|
CHC
|
C:HEM403
|
3.5
|
79.1
|
1.0
|
|
CG
|
C:HIS102
|
4.0
|
32.2
|
1.0
|
|
CG
|
C:HIS203
|
4.1
|
28.6
|
1.0
|
|
ND1
|
C:HIS102
|
4.1
|
32.2
|
1.0
|
|
C2A
|
C:HEM403
|
4.2
|
79.1
|
1.0
|
|
ND1
|
C:HIS203
|
4.2
|
28.6
|
1.0
|
|
C3C
|
C:HEM403
|
4.2
|
79.1
|
1.0
|
|
C3A
|
C:HEM403
|
4.2
|
79.1
|
1.0
|
|
C2C
|
C:HEM403
|
4.2
|
79.1
|
1.0
|
|
C2B
|
C:HEM403
|
4.2
|
79.1
|
1.0
|
|
C3D
|
C:HEM403
|
4.2
|
79.1
|
1.0
|
|
C2D
|
C:HEM403
|
4.2
|
79.1
|
1.0
|
|
C3B
|
C:HEM403
|
4.3
|
79.1
|
1.0
|
|
Iron binding site 3 out
of 6 in 7jrg
Go back to
Iron Binding Sites List in 7jrg
Iron binding site 3 out
of 6 in the Plant Mitochondrial Complex III2 From Vigna Radiata
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Plant Mitochondrial Complex III2 From Vigna Radiata within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe501
b:79.1
occ:1.00
|
FE
|
D:HEC501
|
0.0
|
79.1
|
1.0
|
|
NE2
|
D:HIS106
|
1.9
|
56.2
|
1.0
|
|
NB
|
D:HEC501
|
2.0
|
79.1
|
1.0
|
|
ND
|
D:HEC501
|
2.0
|
79.1
|
1.0
|
|
NA
|
D:HEC501
|
2.0
|
79.1
|
1.0
|
|
NC
|
D:HEC501
|
2.0
|
79.1
|
1.0
|
|
SD
|
D:MET225
|
2.5
|
74.1
|
1.0
|
|
CE1
|
D:HIS106
|
2.7
|
56.2
|
1.0
|
|
CE
|
D:MET225
|
3.0
|
74.1
|
1.0
|
|
C1D
|
D:HEC501
|
3.0
|
79.1
|
1.0
|
|
C1B
|
D:HEC501
|
3.0
|
79.1
|
1.0
|
|
CD2
|
D:HIS106
|
3.0
|
56.2
|
1.0
|
|
C4B
|
D:HEC501
|
3.0
|
79.1
|
1.0
|
|
C4D
|
D:HEC501
|
3.0
|
79.1
|
1.0
|
|
C4A
|
D:HEC501
|
3.0
|
79.1
|
1.0
|
|
C1A
|
D:HEC501
|
3.0
|
79.1
|
1.0
|
|
C4C
|
D:HEC501
|
3.0
|
79.1
|
1.0
|
|
C1C
|
D:HEC501
|
3.1
|
79.1
|
1.0
|
|
CHD
|
D:HEC501
|
3.4
|
79.1
|
1.0
|
|
CHB
|
D:HEC501
|
3.4
|
79.1
|
1.0
|
|
CHA
|
D:HEC501
|
3.4
|
79.1
|
1.0
|
|
CHC
|
D:HEC501
|
3.5
|
79.1
|
1.0
|
|
ND1
|
D:HIS106
|
3.8
|
56.2
|
1.0
|
|
CG
|
D:MET225
|
3.9
|
74.1
|
1.0
|
|
CG
|
D:HIS106
|
4.0
|
56.2
|
1.0
|
|
CB
|
D:MET225
|
4.1
|
74.1
|
1.0
|
|
C3B
|
D:HEC501
|
4.2
|
79.1
|
1.0
|
|
C2B
|
D:HEC501
|
4.2
|
79.1
|
1.0
|
|
C2D
|
D:HEC501
|
4.2
|
79.1
|
1.0
|
|
C3D
|
D:HEC501
|
4.3
|
79.1
|
1.0
|
|
C3C
|
D:HEC501
|
4.3
|
79.1
|
1.0
|
|
C3A
|
D:HEC501
|
4.3
|
79.1
|
1.0
|
|
C2A
|
D:HEC501
|
4.3
|
79.1
|
1.0
|
|
C2C
|
D:HEC501
|
4.3
|
79.1
|
1.0
|
|
Iron binding site 4 out
of 6 in 7jrg
Go back to
Iron Binding Sites List in 7jrg
Iron binding site 4 out
of 6 in the Plant Mitochondrial Complex III2 From Vigna Radiata
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Plant Mitochondrial Complex III2 From Vigna Radiata within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe403
b:79.1
occ:1.00
|
FE
|
O:HEM403
|
0.0
|
79.1
|
1.0
|
|
NA
|
O:HEM403
|
2.0
|
79.1
|
1.0
|
|
NC
|
O:HEM403
|
2.0
|
79.1
|
1.0
|
|
ND
|
O:HEM403
|
2.0
|
79.1
|
1.0
|
|
NB
|
O:HEM403
|
2.0
|
79.1
|
1.0
|
|
NE2
|
O:HIS189
|
2.0
|
31.2
|
1.0
|
|
NE2
|
O:HIS88
|
2.0
|
30.1
|
1.0
|
|
CE1
|
O:HIS189
|
2.9
|
31.2
|
1.0
|
|
C4D
|
O:HEM403
|
3.0
|
79.1
|
1.0
|
|
CE1
|
O:HIS88
|
3.0
|
30.1
|
1.0
|
|
C1A
|
O:HEM403
|
3.0
|
79.1
|
1.0
|
|
C1D
|
O:HEM403
|
3.0
|
79.1
|
1.0
|
|
C4C
|
O:HEM403
|
3.0
|
79.1
|
1.0
|
|
C1B
|
O:HEM403
|
3.0
|
79.1
|
1.0
|
|
C4B
|
O:HEM403
|
3.0
|
79.1
|
1.0
|
|
C1C
|
O:HEM403
|
3.0
|
79.1
|
1.0
|
|
C4A
|
O:HEM403
|
3.0
|
79.1
|
1.0
|
|
CD2
|
O:HIS88
|
3.1
|
30.1
|
1.0
|
|
CD2
|
O:HIS189
|
3.1
|
31.2
|
1.0
|
|
CHA
|
O:HEM403
|
3.4
|
79.1
|
1.0
|
|
CHD
|
O:HEM403
|
3.4
|
79.1
|
1.0
|
|
CHB
|
O:HEM403
|
3.4
|
79.1
|
1.0
|
|
CHC
|
O:HEM403
|
3.4
|
79.1
|
1.0
|
|
ND1
|
O:HIS189
|
4.0
|
31.2
|
1.0
|
|
ND1
|
O:HIS88
|
4.1
|
30.1
|
1.0
|
|
C2A
|
O:HEM403
|
4.2
|
79.1
|
1.0
|
|
CG
|
O:HIS189
|
4.2
|
31.2
|
1.0
|
|
C3C
|
O:HEM403
|
4.2
|
79.1
|
1.0
|
|
CG
|
O:HIS88
|
4.2
|
30.1
|
1.0
|
|
C2B
|
O:HEM403
|
4.2
|
79.1
|
1.0
|
|
C3A
|
O:HEM403
|
4.2
|
79.1
|
1.0
|
|
C2C
|
O:HEM403
|
4.2
|
79.1
|
1.0
|
|
C3D
|
O:HEM403
|
4.2
|
79.1
|
1.0
|
|
C2D
|
O:HEM403
|
4.2
|
79.1
|
1.0
|
|
C3B
|
O:HEM403
|
4.2
|
79.1
|
1.0
|
|
CA
|
O:GLY137
|
5.0
|
34.5
|
1.0
|
|
Iron binding site 5 out
of 6 in 7jrg
Go back to
Iron Binding Sites List in 7jrg
Iron binding site 5 out
of 6 in the Plant Mitochondrial Complex III2 From Vigna Radiata
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Plant Mitochondrial Complex III2 From Vigna Radiata within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe404
b:79.1
occ:1.00
|
FE
|
O:HEM404
|
0.0
|
79.1
|
1.0
|
|
NA
|
O:HEM404
|
2.0
|
79.1
|
1.0
|
|
NC
|
O:HEM404
|
2.0
|
79.1
|
1.0
|
|
ND
|
O:HEM404
|
2.0
|
79.1
|
1.0
|
|
NB
|
O:HEM404
|
2.0
|
79.1
|
1.0
|
|
NE2
|
O:HIS203
|
2.1
|
28.1
|
1.0
|
|
NE2
|
O:HIS102
|
2.1
|
29.8
|
1.0
|
|
CD2
|
O:HIS203
|
2.9
|
28.1
|
1.0
|
|
CD2
|
O:HIS102
|
2.9
|
29.8
|
1.0
|
|
C4D
|
O:HEM404
|
3.0
|
79.1
|
1.0
|
|
C1D
|
O:HEM404
|
3.0
|
79.1
|
1.0
|
|
C4C
|
O:HEM404
|
3.0
|
79.1
|
1.0
|
|
C1A
|
O:HEM404
|
3.0
|
79.1
|
1.0
|
|
C1B
|
O:HEM404
|
3.0
|
79.1
|
1.0
|
|
C4B
|
O:HEM404
|
3.0
|
79.1
|
1.0
|
|
C4A
|
O:HEM404
|
3.0
|
79.1
|
1.0
|
|
C1C
|
O:HEM404
|
3.0
|
79.1
|
1.0
|
|
CE1
|
O:HIS203
|
3.2
|
28.1
|
1.0
|
|
CE1
|
O:HIS102
|
3.2
|
29.8
|
1.0
|
|
CHA
|
O:HEM404
|
3.4
|
79.1
|
1.0
|
|
CHD
|
O:HEM404
|
3.4
|
79.1
|
1.0
|
|
CHB
|
O:HEM404
|
3.5
|
79.1
|
1.0
|
|
CHC
|
O:HEM404
|
3.5
|
79.1
|
1.0
|
|
CG
|
O:HIS203
|
4.1
|
28.1
|
1.0
|
|
CG
|
O:HIS102
|
4.1
|
29.8
|
1.0
|
|
ND1
|
O:HIS203
|
4.2
|
28.1
|
1.0
|
|
C2A
|
O:HEM404
|
4.2
|
79.1
|
1.0
|
|
C3C
|
O:HEM404
|
4.2
|
79.1
|
1.0
|
|
ND1
|
O:HIS102
|
4.2
|
29.8
|
1.0
|
|
C3A
|
O:HEM404
|
4.2
|
79.1
|
1.0
|
|
C2C
|
O:HEM404
|
4.2
|
79.1
|
1.0
|
|
C2B
|
O:HEM404
|
4.2
|
79.1
|
1.0
|
|
C2D
|
O:HEM404
|
4.2
|
79.1
|
1.0
|
|
C3D
|
O:HEM404
|
4.2
|
79.1
|
1.0
|
|
C3B
|
O:HEM404
|
4.3
|
79.1
|
1.0
|
|
Iron binding site 6 out
of 6 in 7jrg
Go back to
Iron Binding Sites List in 7jrg
Iron binding site 6 out
of 6 in the Plant Mitochondrial Complex III2 From Vigna Radiata
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Plant Mitochondrial Complex III2 From Vigna Radiata within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe501
b:79.1
occ:1.00
|
FE
|
P:HEC501
|
0.0
|
79.1
|
1.0
|
|
NE2
|
P:HIS106
|
1.9
|
50.7
|
1.0
|
|
NB
|
P:HEC501
|
2.0
|
79.1
|
1.0
|
|
NC
|
P:HEC501
|
2.0
|
79.1
|
1.0
|
|
NA
|
P:HEC501
|
2.0
|
79.1
|
1.0
|
|
ND
|
P:HEC501
|
2.0
|
79.1
|
1.0
|
|
SD
|
P:MET225
|
2.4
|
69.5
|
1.0
|
|
CE1
|
P:HIS106
|
2.8
|
50.7
|
1.0
|
|
CD2
|
P:HIS106
|
2.9
|
50.7
|
1.0
|
|
C4B
|
P:HEC501
|
3.0
|
79.1
|
1.0
|
|
C1B
|
P:HEC501
|
3.0
|
79.1
|
1.0
|
|
C1D
|
P:HEC501
|
3.0
|
79.1
|
1.0
|
|
C4D
|
P:HEC501
|
3.0
|
79.1
|
1.0
|
|
C1C
|
P:HEC501
|
3.0
|
79.1
|
1.0
|
|
C4A
|
P:HEC501
|
3.0
|
79.1
|
1.0
|
|
C1A
|
P:HEC501
|
3.0
|
79.1
|
1.0
|
|
C4C
|
P:HEC501
|
3.0
|
79.1
|
1.0
|
|
CHD
|
P:HEC501
|
3.4
|
79.1
|
1.0
|
|
CHB
|
P:HEC501
|
3.4
|
79.1
|
1.0
|
|
CHA
|
P:HEC501
|
3.4
|
79.1
|
1.0
|
|
CHC
|
P:HEC501
|
3.4
|
79.1
|
1.0
|
|
CG
|
P:MET225
|
3.8
|
69.5
|
1.0
|
|
CE
|
P:MET225
|
3.8
|
69.5
|
1.0
|
|
ND1
|
P:HIS106
|
3.9
|
50.7
|
1.0
|
|
CB
|
P:MET225
|
4.0
|
69.5
|
1.0
|
|
CG
|
P:HIS106
|
4.0
|
50.7
|
1.0
|
|
C3B
|
P:HEC501
|
4.2
|
79.1
|
1.0
|
|
C2B
|
P:HEC501
|
4.2
|
79.1
|
1.0
|
|
C2D
|
P:HEC501
|
4.2
|
79.1
|
1.0
|
|
C3C
|
P:HEC501
|
4.2
|
79.1
|
1.0
|
|
C3D
|
P:HEC501
|
4.2
|
79.1
|
1.0
|
|
C3A
|
P:HEC501
|
4.3
|
79.1
|
1.0
|
|
C2A
|
P:HEC501
|
4.3
|
79.1
|
1.0
|
|
C2C
|
P:HEC501
|
4.3
|
79.1
|
1.0
|
|
Reference:
M.Maldonado,
F.Guo,
J.A.Letts.
Atomic Structures of Respiratory Complex III2 , Complex IV and Supercomplex III2-IV From Vascular Plants To Be Published.
Page generated: Sun Jan 24 17:11:51 2021
|
