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Iron in PDB 7jrp: Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata

Enzymatic activity of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata

All present enzymatic activity of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata:
7.1.1.8;

Other elements in 7jrp:

The structure of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata also contains other interesting chemical elements:

Zinc (Zn) 3 atoms
Copper (Cu) 3 atoms
Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata (pdb code 7jrp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata, PDB code: 7jrp:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 7jrp

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Iron binding site 1 out of 8 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe402

b:79.1
occ:1.00
FE C:HEM402 0.0 79.1 1.0
NE2 C:HIS189 2.0 27.6 1.0
NA C:HEM402 2.0 79.1 1.0
NC C:HEM402 2.0 79.1 1.0
ND C:HEM402 2.0 79.1 1.0
NB C:HEM402 2.0 79.1 1.0
NE2 C:HIS88 2.1 29.8 1.0
CE1 C:HIS189 2.8 27.6 1.0
CE1 C:HIS88 2.9 29.8 1.0
C4D C:HEM402 3.0 79.1 1.0
C1A C:HEM402 3.0 79.1 1.0
C4C C:HEM402 3.0 79.1 1.0
C1D C:HEM402 3.0 79.1 1.0
C1B C:HEM402 3.0 79.1 1.0
C4B C:HEM402 3.0 79.1 1.0
C4A C:HEM402 3.0 79.1 1.0
C1C C:HEM402 3.0 79.1 1.0
CD2 C:HIS189 3.1 27.6 1.0
CD2 C:HIS88 3.1 29.8 1.0
CHA C:HEM402 3.4 79.1 1.0
CHD C:HEM402 3.4 79.1 1.0
CHB C:HEM402 3.4 79.1 1.0
CHC C:HEM402 3.5 79.1 1.0
ND1 C:HIS189 4.0 27.6 1.0
ND1 C:HIS88 4.1 29.8 1.0
CG C:HIS189 4.2 27.6 1.0
C2A C:HEM402 4.2 79.1 1.0
C3C C:HEM402 4.2 79.1 1.0
C2B C:HEM402 4.2 79.1 1.0
C3A C:HEM402 4.2 79.1 1.0
CG C:HIS88 4.2 29.8 1.0
C2C C:HEM402 4.2 79.1 1.0
C3D C:HEM402 4.2 79.1 1.0
C2D C:HEM402 4.2 79.1 1.0
C3B C:HEM402 4.3 79.1 1.0
CA C:GLY137 5.0 33.2 1.0

Iron binding site 2 out of 8 in 7jrp

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Iron binding site 2 out of 8 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe403

b:79.1
occ:1.00
FE C:HEM403 0.0 79.1 1.0
NA C:HEM403 2.0 79.1 1.0
NC C:HEM403 2.0 79.1 1.0
ND C:HEM403 2.0 79.1 1.0
NE2 C:HIS102 2.0 32.2 1.0
NB C:HEM403 2.0 79.1 1.0
NE2 C:HIS203 2.1 28.6 1.0
CD2 C:HIS102 2.8 32.2 1.0
CD2 C:HIS203 2.9 28.6 1.0
C4D C:HEM403 3.0 79.1 1.0
C1A C:HEM403 3.0 79.1 1.0
C1D C:HEM403 3.0 79.1 1.0
C4C C:HEM403 3.0 79.1 1.0
C1B C:HEM403 3.0 79.1 1.0
C4B C:HEM403 3.0 79.1 1.0
C4A C:HEM403 3.0 79.1 1.0
C1C C:HEM403 3.0 79.1 1.0
CE1 C:HIS102 3.1 32.2 1.0
CE1 C:HIS203 3.2 28.6 1.0
CHA C:HEM403 3.4 79.1 1.0
CHD C:HEM403 3.4 79.1 1.0
CHB C:HEM403 3.4 79.1 1.0
CHC C:HEM403 3.5 79.1 1.0
CG C:HIS102 4.0 32.2 1.0
CG C:HIS203 4.1 28.6 1.0
ND1 C:HIS102 4.1 32.2 1.0
C2A C:HEM403 4.2 79.1 1.0
ND1 C:HIS203 4.2 28.6 1.0
C3C C:HEM403 4.2 79.1 1.0
C3A C:HEM403 4.2 79.1 1.0
C2C C:HEM403 4.2 79.1 1.0
C3D C:HEM403 4.2 79.1 1.0
C2B C:HEM403 4.2 79.1 1.0
C2D C:HEM403 4.2 79.1 1.0
C3B C:HEM403 4.3 79.1 1.0

Iron binding site 3 out of 8 in 7jrp

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Iron binding site 3 out of 8 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe501

b:79.1
occ:1.00
FE D:HEC501 0.0 79.1 1.0
NE2 D:HIS106 1.9 56.2 1.0
NB D:HEC501 2.0 79.1 1.0
ND D:HEC501 2.0 79.1 1.0
NA D:HEC501 2.0 79.1 1.0
NC D:HEC501 2.0 79.1 1.0
SD D:MET225 2.5 74.1 1.0
CE1 D:HIS106 2.7 56.2 1.0
CE D:MET225 3.0 74.1 1.0
C1D D:HEC501 3.0 79.1 1.0
C1B D:HEC501 3.0 79.1 1.0
CD2 D:HIS106 3.0 56.2 1.0
C4B D:HEC501 3.0 79.1 1.0
C4D D:HEC501 3.0 79.1 1.0
C4A D:HEC501 3.0 79.1 1.0
C1A D:HEC501 3.0 79.1 1.0
C4C D:HEC501 3.0 79.1 1.0
C1C D:HEC501 3.1 79.1 1.0
CHD D:HEC501 3.4 79.1 1.0
CHB D:HEC501 3.4 79.1 1.0
CHA D:HEC501 3.4 79.1 1.0
CHC D:HEC501 3.5 79.1 1.0
ND1 D:HIS106 3.8 56.2 1.0
CG D:MET225 3.9 74.1 1.0
CG D:HIS106 4.0 56.2 1.0
CB D:MET225 4.1 74.1 1.0
C3B D:HEC501 4.2 79.1 1.0
C2B D:HEC501 4.2 79.1 1.0
C2D D:HEC501 4.2 79.1 1.0
C3D D:HEC501 4.2 79.1 1.0
C3C D:HEC501 4.3 79.1 1.0
C3A D:HEC501 4.3 79.1 1.0
C2A D:HEC501 4.3 79.1 1.0
C2C D:HEC501 4.3 79.1 1.0

Iron binding site 4 out of 8 in 7jrp

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Iron binding site 4 out of 8 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Fe403

b:79.1
occ:1.00
FE O:HEM403 0.0 79.1 1.0
NA O:HEM403 2.0 79.1 1.0
NC O:HEM403 2.0 79.1 1.0
ND O:HEM403 2.0 79.1 1.0
NB O:HEM403 2.0 79.1 1.0
NE2 O:HIS189 2.0 31.2 1.0
NE2 O:HIS88 2.0 30.1 1.0
CE1 O:HIS189 2.9 31.2 1.0
C4D O:HEM403 3.0 79.1 1.0
CE1 O:HIS88 3.0 30.1 1.0
C1A O:HEM403 3.0 79.1 1.0
C1D O:HEM403 3.0 79.1 1.0
C4C O:HEM403 3.0 79.1 1.0
C1B O:HEM403 3.0 79.1 1.0
C4B O:HEM403 3.0 79.1 1.0
C1C O:HEM403 3.0 79.1 1.0
C4A O:HEM403 3.0 79.1 1.0
CD2 O:HIS88 3.1 30.1 1.0
CD2 O:HIS189 3.1 31.2 1.0
CHA O:HEM403 3.4 79.1 1.0
CHD O:HEM403 3.4 79.1 1.0
CHC O:HEM403 3.4 79.1 1.0
CHB O:HEM403 3.4 79.1 1.0
ND1 O:HIS189 4.0 31.2 1.0
ND1 O:HIS88 4.1 30.1 1.0
C2A O:HEM403 4.2 79.1 1.0
CG O:HIS189 4.2 31.2 1.0
C3C O:HEM403 4.2 79.1 1.0
CG O:HIS88 4.2 30.1 1.0
C2B O:HEM403 4.2 79.1 1.0
C3A O:HEM403 4.2 79.1 1.0
C2C O:HEM403 4.2 79.1 1.0
C3D O:HEM403 4.2 79.1 1.0
C2D O:HEM403 4.2 79.1 1.0
C3B O:HEM403 4.2 79.1 1.0
CA O:GLY137 5.0 34.5 1.0

Iron binding site 5 out of 8 in 7jrp

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Iron binding site 5 out of 8 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Fe404

b:79.1
occ:1.00
FE O:HEM404 0.0 79.1 1.0
NA O:HEM404 2.0 79.1 1.0
NC O:HEM404 2.0 79.1 1.0
ND O:HEM404 2.0 79.1 1.0
NB O:HEM404 2.0 79.1 1.0
NE2 O:HIS203 2.1 28.1 1.0
NE2 O:HIS102 2.1 29.8 1.0
CD2 O:HIS203 2.9 28.1 1.0
CD2 O:HIS102 2.9 29.8 1.0
C1D O:HEM404 3.0 79.1 1.0
C4D O:HEM404 3.0 79.1 1.0
C4C O:HEM404 3.0 79.1 1.0
C1A O:HEM404 3.0 79.1 1.0
C1B O:HEM404 3.0 79.1 1.0
C4B O:HEM404 3.0 79.1 1.0
C4A O:HEM404 3.0 79.1 1.0
C1C O:HEM404 3.0 79.1 1.0
CE1 O:HIS203 3.2 28.1 1.0
CE1 O:HIS102 3.2 29.8 1.0
CHA O:HEM404 3.4 79.1 1.0
CHD O:HEM404 3.4 79.1 1.0
CHB O:HEM404 3.5 79.1 1.0
CHC O:HEM404 3.5 79.1 1.0
CG O:HIS203 4.1 28.1 1.0
CG O:HIS102 4.1 29.8 1.0
ND1 O:HIS203 4.2 28.1 1.0
C2A O:HEM404 4.2 79.1 1.0
C3C O:HEM404 4.2 79.1 1.0
ND1 O:HIS102 4.2 29.8 1.0
C3A O:HEM404 4.2 79.1 1.0
C2C O:HEM404 4.2 79.1 1.0
C2B O:HEM404 4.2 79.1 1.0
C2D O:HEM404 4.2 79.1 1.0
C3D O:HEM404 4.2 79.1 1.0
C3B O:HEM404 4.3 79.1 1.0

Iron binding site 6 out of 8 in 7jrp

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Iron binding site 6 out of 8 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe402

b:79.1
occ:1.00
FE P:HEC402 0.0 79.1 1.0
NE2 P:HIS106 1.9 50.7 1.0
NB P:HEC402 2.0 79.1 1.0
NC P:HEC402 2.0 79.1 1.0
NA P:HEC402 2.0 79.1 1.0
ND P:HEC402 2.0 79.1 1.0
SD P:MET225 2.4 69.5 1.0
CE1 P:HIS106 2.8 50.7 1.0
CD2 P:HIS106 2.9 50.7 1.0
C4B P:HEC402 3.0 79.1 1.0
C1D P:HEC402 3.0 79.1 1.0
C1B P:HEC402 3.0 79.1 1.0
C4D P:HEC402 3.0 79.1 1.0
C4A P:HEC402 3.0 79.1 1.0
C1C P:HEC402 3.0 79.1 1.0
C1A P:HEC402 3.0 79.1 1.0
C4C P:HEC402 3.0 79.1 1.0
CHD P:HEC402 3.4 79.1 1.0
CHB P:HEC402 3.4 79.1 1.0
CHA P:HEC402 3.4 79.1 1.0
CHC P:HEC402 3.4 79.1 1.0
CG P:MET225 3.8 69.5 1.0
CE P:MET225 3.8 69.5 1.0
ND1 P:HIS106 3.9 50.7 1.0
CB P:MET225 4.0 69.5 1.0
CG P:HIS106 4.0 50.7 1.0
C3B P:HEC402 4.2 79.1 1.0
C2B P:HEC402 4.2 79.1 1.0
C2D P:HEC402 4.2 79.1 1.0
C3C P:HEC402 4.2 79.1 1.0
C3D P:HEC402 4.2 79.1 1.0
C3A P:HEC402 4.3 79.1 1.0
C2A P:HEC402 4.3 79.1 1.0
C2C P:HEC402 4.3 79.1 1.0

Iron binding site 7 out of 8 in 7jrp

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Iron binding site 7 out of 8 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe601

b:50.7
occ:1.00
FE a:HEA601 0.0 50.7 1.0
NA a:HEA601 2.0 50.7 1.0
NC a:HEA601 2.0 50.7 1.0
ND a:HEA601 2.0 50.7 1.0
NB a:HEA601 2.0 50.7 1.0
NE2 a:HIS378 2.4 20.9 1.0
C1D a:HEA601 3.0 50.7 1.0
C4A a:HEA601 3.0 50.7 1.0
C4B a:HEA601 3.0 50.7 1.0
C1A a:HEA601 3.0 50.7 1.0
C4D a:HEA601 3.0 50.7 1.0
C1C a:HEA601 3.0 50.7 1.0
C4C a:HEA601 3.0 50.7 1.0
C1B a:HEA601 3.0 50.7 1.0
CHD a:HEA601 3.3 50.7 1.0
CHC a:HEA601 3.3 50.7 1.0
CE1 a:HIS378 3.3 20.9 1.0
CHA a:HEA601 3.4 50.7 1.0
CHB a:HEA601 3.4 50.7 1.0
CD2 a:HIS378 3.5 20.9 1.0
C3A a:HEA601 4.2 50.7 1.0
C2C a:HEA601 4.2 50.7 1.0
C2A a:HEA601 4.2 50.7 1.0
C3C a:HEA601 4.2 50.7 1.0
C2B a:HEA601 4.2 50.7 1.0
C2D a:HEA601 4.2 50.7 1.0
C3B a:HEA601 4.3 50.7 1.0
C3D a:HEA601 4.3 50.7 1.0
ND1 a:HIS378 4.5 20.9 1.0
CE1 a:HIS292 4.6 29.8 1.0
CG a:HIS378 4.6 20.9 1.0
CU a:CU603 4.7 50.7 1.0

Iron binding site 8 out of 8 in 7jrp

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Iron binding site 8 out of 8 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe602

b:50.7
occ:1.00
FE a:HEA602 0.0 50.7 1.0
NA a:HEA602 2.0 50.7 1.0
NC a:HEA602 2.0 50.7 1.0
ND a:HEA602 2.0 50.7 1.0
NB a:HEA602 2.0 50.7 1.0
NE2 a:HIS380 2.1 20.8 1.0
NE2 a:HIS64 2.2 19.5 1.0
CE1 a:HIS380 2.8 20.8 1.0
C1D a:HEA602 3.0 50.7 1.0
C4B a:HEA602 3.0 50.7 1.0
C4A a:HEA602 3.0 50.7 1.0
C1A a:HEA602 3.0 50.7 1.0
C4C a:HEA602 3.0 50.7 1.0
C1C a:HEA602 3.0 50.7 1.0
C4D a:HEA602 3.0 50.7 1.0
C1B a:HEA602 3.1 50.7 1.0
CE1 a:HIS64 3.1 19.5 1.0
CD2 a:HIS64 3.3 19.5 1.0
CD2 a:HIS380 3.3 20.8 1.0
CHC a:HEA602 3.4 50.7 1.0
CHD a:HEA602 3.4 50.7 1.0
CHA a:HEA602 3.4 50.7 1.0
CHB a:HEA602 3.4 50.7 1.0
ND1 a:HIS380 4.0 20.8 1.0
C2C a:HEA602 4.2 50.7 1.0
C3C a:HEA602 4.2 50.7 1.0
C3A a:HEA602 4.2 50.7 1.0
C2A a:HEA602 4.2 50.7 1.0
C2B a:HEA602 4.3 50.7 1.0
C2D a:HEA602 4.3 50.7 1.0
C3B a:HEA602 4.3 50.7 1.0
ND1 a:HIS64 4.3 19.5 1.0
CG a:HIS380 4.3 20.8 1.0
C3D a:HEA602 4.3 50.7 1.0
CG a:HIS64 4.4 19.5 1.0

Reference:

M.Maldonado, F.Guo, J.A.Letts. Atomic Structures of Respiratory Complex III2 , Complex IV and Supercomplex III2-IV From Vascular Plants To Be Published.
Page generated: Thu Aug 8 05:51:08 2024

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