Iron in PDB 7jxt: Structure of the Ovine Cox-1 Bound to Compound 2A
Enzymatic activity of Structure of the Ovine Cox-1 Bound to Compound 2A
All present enzymatic activity of Structure of the Ovine Cox-1 Bound to Compound 2A:
1.14.99.1;
Protein crystallography data
The structure of Structure of the Ovine Cox-1 Bound to Compound 2A, PDB code: 7jxt
was solved by
Y.Ko,
M.Iaselli,
M.Miciaccia,
L.Friedrich,
G.Schneider,
A.Scilimati,
G.Cingolani,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
14.99 /
3.35
|
Space group
|
P 65
|
Cell size a, b, c (Å), α, β, γ (°)
|
181.6,
181.6,
103.401,
90,
90,
120
|
R / Rfree (%)
|
21 /
25
|
Other elements in 7jxt:
The structure of Structure of the Ovine Cox-1 Bound to Compound 2A also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of the Ovine Cox-1 Bound to Compound 2A
(pdb code 7jxt). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Structure of the Ovine Cox-1 Bound to Compound 2A, PDB code: 7jxt:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 7jxt
Go back to
Iron Binding Sites List in 7jxt
Iron binding site 1 out
of 2 in the Structure of the Ovine Cox-1 Bound to Compound 2A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of the Ovine Cox-1 Bound to Compound 2A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:136.2
occ:1.00
|
FE
|
A:HEM601
|
0.0
|
136.2
|
1.0
|
NB
|
A:HEM601
|
2.1
|
130.9
|
1.0
|
ND
|
A:HEM601
|
2.1
|
144.2
|
1.0
|
NC
|
A:HEM601
|
2.1
|
129.6
|
1.0
|
NA
|
A:HEM601
|
2.1
|
137.7
|
1.0
|
NE2
|
A:HIS388
|
2.9
|
123.1
|
1.0
|
HD2
|
A:HIS388
|
3.0
|
116.8
|
1.0
|
C1D
|
A:HEM601
|
3.0
|
145.1
|
1.0
|
C1C
|
A:HEM601
|
3.1
|
124.9
|
1.0
|
C4D
|
A:HEM601
|
3.1
|
137.5
|
1.0
|
C4A
|
A:HEM601
|
3.1
|
121.7
|
1.0
|
C4B
|
A:HEM601
|
3.1
|
126.1
|
1.0
|
C1B
|
A:HEM601
|
3.1
|
123.9
|
1.0
|
C1A
|
A:HEM601
|
3.1
|
147.2
|
1.0
|
C4C
|
A:HEM601
|
3.1
|
132.5
|
1.0
|
CD2
|
A:HIS388
|
3.2
|
116.1
|
1.0
|
CHD
|
A:HEM601
|
3.4
|
137.4
|
1.0
|
CHC
|
A:HEM601
|
3.4
|
126.5
|
1.0
|
CHB
|
A:HEM601
|
3.4
|
121.7
|
1.0
|
CHA
|
A:HEM601
|
3.4
|
145.6
|
1.0
|
HE21
|
A:GLN203
|
3.7
|
116.0
|
1.0
|
HE1
|
A:HIS207
|
3.9
|
126.3
|
1.0
|
NE2
|
A:GLN203
|
4.0
|
120.1
|
1.0
|
CE1
|
A:HIS388
|
4.0
|
127.2
|
1.0
|
HG3
|
A:GLN203
|
4.1
|
110.2
|
1.0
|
HE22
|
A:GLN203
|
4.2
|
116.0
|
1.0
|
HG11
|
A:VAL447
|
4.3
|
126.1
|
1.0
|
C2D
|
A:HEM601
|
4.3
|
147.3
|
1.0
|
C3D
|
A:HEM601
|
4.3
|
138.3
|
1.0
|
C3A
|
A:HEM601
|
4.3
|
127.8
|
1.0
|
C2C
|
A:HEM601
|
4.3
|
119.7
|
1.0
|
C2A
|
A:HEM601
|
4.3
|
145.8
|
1.0
|
C2B
|
A:HEM601
|
4.3
|
111.0
|
1.0
|
C3B
|
A:HEM601
|
4.3
|
116.0
|
1.0
|
C3C
|
A:HEM601
|
4.3
|
121.4
|
1.0
|
HHD
|
A:HEM601
|
4.4
|
136.9
|
1.0
|
HHC
|
A:HEM601
|
4.4
|
126.1
|
1.0
|
HHA
|
A:HEM601
|
4.4
|
145.2
|
1.0
|
HHB
|
A:HEM601
|
4.4
|
121.3
|
1.0
|
HE1
|
A:HIS388
|
4.4
|
128.3
|
1.0
|
CG
|
A:HIS388
|
4.5
|
122.2
|
1.0
|
HG21
|
A:VAL447
|
4.6
|
121.6
|
1.0
|
CD
|
A:GLN203
|
4.6
|
123.4
|
1.0
|
CE1
|
A:HIS207
|
4.6
|
127.0
|
1.0
|
ND1
|
A:HIS388
|
4.8
|
128.3
|
1.0
|
CG
|
A:GLN203
|
4.9
|
112.5
|
1.0
|
NE2
|
A:HIS207
|
4.9
|
138.5
|
1.0
|
|
Iron binding site 2 out
of 2 in 7jxt
Go back to
Iron Binding Sites List in 7jxt
Iron binding site 2 out
of 2 in the Structure of the Ovine Cox-1 Bound to Compound 2A
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of the Ovine Cox-1 Bound to Compound 2A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:135.3
occ:1.00
|
FE
|
B:HEM601
|
0.0
|
135.3
|
1.0
|
NB
|
B:HEM601
|
2.0
|
129.5
|
1.0
|
NA
|
B:HEM601
|
2.0
|
137.5
|
1.0
|
ND
|
B:HEM601
|
2.1
|
135.8
|
1.0
|
NC
|
B:HEM601
|
2.1
|
120.2
|
1.0
|
NE2
|
B:HIS388
|
2.8
|
118.5
|
1.0
|
C1D
|
B:HEM601
|
3.0
|
134.7
|
1.0
|
C4D
|
B:HEM601
|
3.1
|
133.1
|
1.0
|
C4A
|
B:HEM601
|
3.1
|
124.8
|
1.0
|
C1B
|
B:HEM601
|
3.1
|
127.2
|
1.0
|
C4B
|
B:HEM601
|
3.1
|
130.9
|
1.0
|
C1C
|
B:HEM601
|
3.1
|
117.8
|
1.0
|
C1A
|
B:HEM601
|
3.1
|
148.9
|
1.0
|
C4C
|
B:HEM601
|
3.1
|
120.7
|
1.0
|
HD2
|
B:HIS388
|
3.1
|
116.1
|
1.0
|
CD2
|
B:HIS388
|
3.2
|
116.8
|
1.0
|
CHB
|
B:HEM601
|
3.4
|
121.0
|
1.0
|
CHD
|
B:HEM601
|
3.4
|
126.7
|
1.0
|
CHC
|
B:HEM601
|
3.4
|
126.0
|
1.0
|
CHA
|
B:HEM601
|
3.4
|
144.8
|
1.0
|
HE1
|
B:HIS207
|
3.7
|
125.7
|
1.0
|
HE21
|
B:GLN203
|
3.7
|
115.8
|
1.0
|
CE1
|
B:HIS388
|
3.9
|
119.6
|
1.0
|
NE2
|
B:GLN203
|
3.9
|
118.8
|
1.0
|
HG3
|
B:GLN203
|
4.0
|
121.0
|
1.0
|
HE22
|
B:GLN203
|
4.1
|
115.8
|
1.0
|
C2D
|
B:HEM601
|
4.2
|
139.5
|
1.0
|
C3D
|
B:HEM601
|
4.2
|
136.3
|
1.0
|
HE1
|
B:HIS388
|
4.3
|
119.5
|
1.0
|
C3A
|
B:HEM601
|
4.3
|
131.1
|
1.0
|
C2B
|
B:HEM601
|
4.3
|
121.6
|
1.0
|
C3B
|
B:HEM601
|
4.3
|
127.2
|
1.0
|
C2A
|
B:HEM601
|
4.3
|
146.1
|
1.0
|
C2C
|
B:HEM601
|
4.3
|
118.8
|
1.0
|
C3C
|
B:HEM601
|
4.3
|
117.6
|
1.0
|
HG11
|
B:VAL447
|
4.3
|
123.3
|
1.0
|
HHC
|
B:HEM601
|
4.4
|
127.5
|
1.0
|
HHB
|
B:HEM601
|
4.4
|
122.5
|
1.0
|
HHA
|
B:HEM601
|
4.4
|
146.3
|
1.0
|
HHD
|
B:HEM601
|
4.4
|
128.2
|
1.0
|
CE1
|
B:HIS207
|
4.4
|
123.4
|
1.0
|
CG
|
B:HIS388
|
4.5
|
116.0
|
1.0
|
CD
|
B:GLN203
|
4.5
|
124.3
|
1.0
|
NE2
|
B:HIS207
|
4.7
|
125.2
|
1.0
|
ND1
|
B:HIS388
|
4.7
|
118.1
|
1.0
|
CG
|
B:GLN203
|
4.8
|
122.0
|
1.0
|
HG21
|
B:VAL447
|
4.8
|
125.5
|
1.0
|
|
Reference:
G.Cingolani,
Y.Ko,
M.Iaselli.
Structure of the Ovine Cox-1 Bound to Lf-Mp-1A To Be Published.
Page generated: Thu Aug 8 05:53:21 2024
|