Atomistry » Iron » PDB 7fc0-7k5f » 7jy0
Atomistry »
  Iron »
    PDB 7fc0-7k5f »
      7jy0 »

Iron in PDB 7jy0: Structure of Hba with Compound 9

Protein crystallography data

The structure of Structure of Hba with Compound 9, PDB code: 7jy0 was solved by J.Jasti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.75 / 1.63
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.23, 82.52, 63.75, 90, 100.17, 90
R / Rfree (%) 17 / 19.7

Other elements in 7jy0:

The structure of Structure of Hba with Compound 9 also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Hba with Compound 9 (pdb code 7jy0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Hba with Compound 9, PDB code: 7jy0:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7jy0

Go back to Iron Binding Sites List in 7jy0
Iron binding site 1 out of 4 in the Structure of Hba with Compound 9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Hba with Compound 9 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:18.5
occ:1.00
FE A:HEM201 0.0 18.5 1.0
ND A:HEM201 2.0 18.9 1.0
NC A:HEM201 2.0 18.0 1.0
NA A:HEM201 2.0 19.2 1.0
NB A:HEM201 2.0 18.0 1.0
O A:CMO202 2.0 32.4 1.0
NE2 A:HIS87 2.1 18.2 1.0
C A:CMO202 2.9 36.6 1.0
C1D A:HEM201 3.0 19.1 1.0
C1C A:HEM201 3.0 17.7 1.0
C4B A:HEM201 3.0 18.0 1.0
C4D A:HEM201 3.0 19.5 1.0
C4C A:HEM201 3.0 18.4 1.0
C1A A:HEM201 3.1 19.7 1.0
C1B A:HEM201 3.1 18.5 1.0
CE1 A:HIS87 3.1 18.5 1.0
C4A A:HEM201 3.1 19.2 1.0
CD2 A:HIS87 3.2 19.0 1.0
CHC A:HEM201 3.3 18.3 1.0
CHD A:HEM201 3.4 19.4 1.0
CHA A:HEM201 3.4 20.3 1.0
CHB A:HEM201 3.4 19.3 1.0
ND1 A:HIS87 4.2 19.2 1.0
C3D A:HEM201 4.3 20.2 1.0
C3C A:HEM201 4.3 18.5 1.0
C2C A:HEM201 4.3 18.2 1.0
C2D A:HEM201 4.3 19.9 1.0
NE2 A:HIS58 4.3 25.0 1.0
C3A A:HEM201 4.3 20.2 1.0
CG A:HIS87 4.3 17.2 1.0
C2A A:HEM201 4.3 20.6 1.0
C3B A:HEM201 4.3 18.4 1.0
C2B A:HEM201 4.3 18.4 1.0
CG1 A:VAL62 4.6 21.2 0.5
CE1 A:HIS58 4.6 25.2 1.0
CG2 A:VAL62 4.8 15.1 0.5

Iron binding site 2 out of 4 in 7jy0

Go back to Iron Binding Sites List in 7jy0
Iron binding site 2 out of 4 in the Structure of Hba with Compound 9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Hba with Compound 9 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:18.5
occ:1.00
FE B:HEM201 0.0 18.5 1.0
ND B:HEM201 2.0 19.0 1.0
NC B:HEM201 2.0 18.0 1.0
NA B:HEM201 2.0 19.1 1.0
O B:CMO202 2.0 26.1 1.0
NB B:HEM201 2.0 17.8 1.0
NE2 B:HIS92 2.1 19.3 1.0
C B:CMO202 2.9 30.3 1.0
C1D B:HEM201 3.0 19.4 1.0
C4C B:HEM201 3.0 18.4 1.0
C4B B:HEM201 3.0 17.9 1.0
C1B B:HEM201 3.0 18.4 1.0
C4D B:HEM201 3.0 19.8 1.0
C1C B:HEM201 3.0 17.7 1.0
C1A B:HEM201 3.0 19.8 1.0
C4A B:HEM201 3.1 19.2 1.0
CD2 B:HIS92 3.1 20.2 1.0
CE1 B:HIS92 3.1 19.3 1.0
CHD B:HEM201 3.4 19.5 1.0
CHC B:HEM201 3.4 18.2 1.0
CHA B:HEM201 3.4 20.5 1.0
CHB B:HEM201 3.4 19.2 1.0
CG B:HIS92 4.2 19.5 1.0
ND1 B:HIS92 4.2 21.1 1.0
NE2 B:HIS63 4.2 26.2 1.0
C3C B:HEM201 4.2 18.5 1.0
C2C B:HEM201 4.3 18.1 1.0
C2D B:HEM201 4.3 20.3 1.0
C3D B:HEM201 4.3 20.8 1.0
C3A B:HEM201 4.3 20.2 1.0
C2B B:HEM201 4.3 18.4 1.0
C2A B:HEM201 4.3 20.6 1.0
C3B B:HEM201 4.3 18.3 1.0
CG2 B:VAL67 4.8 19.5 1.0
CE1 B:HIS63 4.9 26.5 1.0

Iron binding site 3 out of 4 in 7jy0

Go back to Iron Binding Sites List in 7jy0
Iron binding site 3 out of 4 in the Structure of Hba with Compound 9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Hba with Compound 9 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:18.1
occ:1.00
FE C:HEM202 0.0 18.1 1.0
NC C:HEM202 2.0 17.4 1.0
ND C:HEM202 2.0 18.3 1.0
NA C:HEM202 2.0 19.1 1.0
O C:CMO203 2.0 29.5 1.0
NB C:HEM202 2.0 18.0 1.0
NE2 C:HIS87 2.1 15.7 1.0
C C:CMO203 2.9 32.6 1.0
C1C C:HEM202 3.0 17.1 1.0
C1D C:HEM202 3.0 18.4 1.0
C4B C:HEM202 3.0 17.9 1.0
C4D C:HEM202 3.0 19.1 1.0
CE1 C:HIS87 3.0 16.1 1.0
C1B C:HEM202 3.0 18.8 1.0
C4C C:HEM202 3.0 17.5 1.0
C1A C:HEM202 3.1 19.7 1.0
C4A C:HEM202 3.1 19.6 1.0
CD2 C:HIS87 3.2 16.1 1.0
CHC C:HEM202 3.3 17.9 1.0
CHD C:HEM202 3.4 18.5 1.0
CHB C:HEM202 3.4 19.8 1.0
CHA C:HEM202 3.4 20.0 1.0
ND1 C:HIS87 4.2 17.9 1.0
C3C C:HEM202 4.3 17.5 1.0
C2C C:HEM202 4.3 17.3 1.0
CG C:HIS87 4.3 15.7 1.0
C3D C:HEM202 4.3 19.7 1.0
C2D C:HEM202 4.3 19.2 1.0
C3B C:HEM202 4.3 18.6 1.0
NE2 C:HIS58 4.3 27.2 1.0
C3A C:HEM202 4.3 20.8 1.0
C2B C:HEM202 4.3 18.9 1.0
C2A C:HEM202 4.3 20.9 1.0
CE1 C:HIS58 4.6 27.7 1.0
CG2 C:VAL62 4.8 19.6 1.0

Iron binding site 4 out of 4 in 7jy0

Go back to Iron Binding Sites List in 7jy0
Iron binding site 4 out of 4 in the Structure of Hba with Compound 9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Hba with Compound 9 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:20.7
occ:1.00
FE D:HEM201 0.0 20.7 1.0
NA D:HEM201 2.0 21.5 1.0
ND D:HEM201 2.0 21.3 1.0
NB D:HEM201 2.0 20.1 1.0
NC D:HEM201 2.0 20.2 1.0
O D:CMO202 2.0 28.4 1.0
NE2 D:HIS92 2.1 21.1 1.0
C D:CMO202 2.9 33.3 1.0
C1B D:HEM201 3.0 20.7 1.0
C1D D:HEM201 3.0 21.6 1.0
C4B D:HEM201 3.0 20.1 1.0
C4A D:HEM201 3.0 21.6 1.0
C4D D:HEM201 3.0 22.2 1.0
C4C D:HEM201 3.0 20.6 1.0
C1A D:HEM201 3.0 22.2 1.0
C1C D:HEM201 3.0 19.8 1.0
CE1 D:HIS92 3.0 20.9 1.0
CD2 D:HIS92 3.2 21.9 1.0
CHB D:HEM201 3.4 21.6 1.0
CHD D:HEM201 3.4 21.7 1.0
CHC D:HEM201 3.4 20.4 1.0
CHA D:HEM201 3.4 22.8 1.0
ND1 D:HIS92 4.2 22.3 1.0
C3A D:HEM201 4.2 22.7 1.0
NE2 D:HIS63 4.2 26.2 1.0
C2A D:HEM201 4.3 23.1 1.0
C2B D:HEM201 4.3 20.7 1.0
CG D:HIS92 4.3 21.4 1.0
C3C D:HEM201 4.3 20.6 1.0
C3D D:HEM201 4.3 23.1 1.0
C2D D:HEM201 4.3 22.6 1.0
C2C D:HEM201 4.3 20.3 1.0
C3B D:HEM201 4.3 20.6 1.0
CG2 D:VAL67 4.8 21.8 1.0
CE1 D:HIS63 4.9 26.6 1.0

Reference:

A.Gopalsamy, A.E.Aulabaugh, A.Barakat, K.C.Beaumont, S.Cabral, D.P.Canterbury, A.Casimiro-Garcia, J.S.Chang, M.Z.Chen, C.Choi, R.L.Dow, O.O.Fadeyi, X.Feng, S.P.France, R.M.Howard, J.M.Janz, J.Jasti, R.Jasuja, L.H.Jones, A.King-Ahmad, K.M.Knee, J.T.Kohrt, C.Limberakis, S.Liras, C.A.Martinez, K.F.Mcclure, A.Narayanan, J.Narula, J.J.Novak, T.N.O'connell, M.D.Parikh, D.W.Piotrowski, O.Plotnikova, R.P.Robinson, P.V.Sahasrabudhe, R.Sharma, B.A.Thuma, D.Vasa, L.Wei, A.Z.Wenzel, J.M.Withka, J.Xiao, H.G.Yayla. Pf-07059013: A Noncovalent Modulator of Hemoglobin For Treatment of Sickle Cell Disease. J.Med.Chem. 2020.
ISSN: ISSN 0022-2623
PubMed: 33356244
DOI: 10.1021/ACS.JMEDCHEM.0C01518
Page generated: Thu Aug 8 05:53:56 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy