Iron in PDB 7kif: Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor
Enzymatic activity of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor
All present enzymatic activity of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor:
2.7.7.6;
Other elements in 7kif:
The structure of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor
(pdb code 7kif). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor, PDB code: 7kif:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 7kif
Go back to
Iron Binding Sites List in 7kif
Iron binding site 1 out
of 4 in the Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Z:Fe101
b:129.9
occ:1.00
|
FE1
|
Z:SF4101
|
0.0
|
129.9
|
1.0
|
S2
|
Z:SF4101
|
2.2
|
129.9
|
1.0
|
SG
|
Z:CYS43
|
2.3
|
125.6
|
1.0
|
S3
|
Z:SF4101
|
2.3
|
129.9
|
1.0
|
S4
|
Z:SF4101
|
2.3
|
129.9
|
1.0
|
FE4
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
FE2
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
FE3
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
CB
|
Z:CYS43
|
3.3
|
125.6
|
1.0
|
N
|
Z:GLY68
|
3.3
|
129.8
|
1.0
|
CA
|
Z:GLY67
|
3.3
|
131.3
|
1.0
|
N
|
Z:GLY67
|
3.4
|
131.3
|
1.0
|
C
|
Z:GLY67
|
3.6
|
131.3
|
1.0
|
S1
|
Z:SF4101
|
3.9
|
129.9
|
1.0
|
SG
|
Z:CYS20
|
4.2
|
134.0
|
1.0
|
SG
|
Z:CYS46
|
4.2
|
131.4
|
1.0
|
CA
|
Z:GLY68
|
4.4
|
129.8
|
1.0
|
CB
|
Z:CYS46
|
4.6
|
131.4
|
1.0
|
C
|
Z:TRP66
|
4.6
|
129.1
|
1.0
|
O
|
Z:GLY67
|
4.6
|
131.3
|
1.0
|
SG
|
Z:CYS52
|
4.6
|
128.5
|
1.0
|
CZ3
|
Z:TRP28
|
4.6
|
128.4
|
1.0
|
CA
|
Z:CYS43
|
4.6
|
125.6
|
1.0
|
CH2
|
Z:TRP28
|
4.8
|
128.4
|
1.0
|
CB
|
Z:CYS52
|
4.8
|
128.5
|
1.0
|
O
|
Z:CYS43
|
4.9
|
125.6
|
1.0
|
|
Iron binding site 2 out
of 4 in 7kif
Go back to
Iron Binding Sites List in 7kif
Iron binding site 2 out
of 4 in the Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Z:Fe101
b:129.9
occ:1.00
|
FE2
|
Z:SF4101
|
0.0
|
129.9
|
1.0
|
S1
|
Z:SF4101
|
2.3
|
129.9
|
1.0
|
SG
|
Z:CYS46
|
2.3
|
131.4
|
1.0
|
S3
|
Z:SF4101
|
2.3
|
129.9
|
1.0
|
S4
|
Z:SF4101
|
2.3
|
129.9
|
1.0
|
SG
|
Z:CYS20
|
2.5
|
134.0
|
1.0
|
FE3
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
FE4
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
FE1
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
SG
|
Z:CYS43
|
3.4
|
125.6
|
1.0
|
CB
|
Z:CYS46
|
3.6
|
131.4
|
1.0
|
S2
|
Z:SF4101
|
3.9
|
129.9
|
1.0
|
CG1
|
Z:ILE48
|
4.1
|
128.6
|
1.0
|
CB
|
Z:CYS20
|
4.2
|
134.0
|
1.0
|
CD1
|
Z:LEU18
|
4.3
|
144.1
|
1.0
|
CD1
|
Z:ILE48
|
4.4
|
128.6
|
1.0
|
N
|
Z:CYS20
|
4.6
|
134.0
|
1.0
|
SG
|
Z:CYS52
|
4.6
|
128.5
|
1.0
|
CB
|
Z:CYS43
|
4.7
|
125.6
|
1.0
|
CB
|
Z:CYS52
|
4.8
|
128.5
|
1.0
|
CD
|
Z:PRO19
|
4.8
|
137.0
|
1.0
|
CA
|
Z:CYS20
|
4.8
|
134.0
|
1.0
|
CA
|
Z:CYS46
|
4.9
|
131.4
|
1.0
|
CG
|
Z:LEU18
|
5.0
|
144.1
|
1.0
|
|
Iron binding site 3 out
of 4 in 7kif
Go back to
Iron Binding Sites List in 7kif
Iron binding site 3 out
of 4 in the Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Z:Fe101
b:129.9
occ:1.00
|
FE3
|
Z:SF4101
|
0.0
|
129.9
|
1.0
|
S4
|
Z:SF4101
|
2.2
|
129.9
|
1.0
|
SG
|
Z:CYS52
|
2.3
|
128.5
|
1.0
|
S2
|
Z:SF4101
|
2.3
|
129.9
|
1.0
|
S1
|
Z:SF4101
|
2.3
|
129.9
|
1.0
|
FE2
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
FE1
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
FE4
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
CB
|
Z:CYS52
|
3.1
|
128.5
|
1.0
|
SG
|
Z:CYS20
|
3.4
|
134.0
|
1.0
|
S3
|
Z:SF4101
|
3.9
|
129.9
|
1.0
|
N
|
Z:GLY67
|
4.0
|
131.3
|
1.0
|
CA
|
Z:GLY67
|
4.3
|
131.3
|
1.0
|
SG
|
Z:CYS43
|
4.5
|
125.6
|
1.0
|
CA
|
Z:CYS52
|
4.5
|
128.5
|
1.0
|
CG
|
F:PRO517
|
4.8
|
127.4
|
1.0
|
SG
|
Z:CYS46
|
4.8
|
131.4
|
1.0
|
CB
|
Z:CYS20
|
4.9
|
134.0
|
1.0
|
|
Iron binding site 4 out
of 4 in 7kif
Go back to
Iron Binding Sites List in 7kif
Iron binding site 4 out
of 4 in the Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Z:Fe101
b:129.9
occ:1.00
|
FE4
|
Z:SF4101
|
0.0
|
129.9
|
1.0
|
SG
|
Z:CYS20
|
2.2
|
134.0
|
1.0
|
S3
|
Z:SF4101
|
2.2
|
129.9
|
1.0
|
S1
|
Z:SF4101
|
2.3
|
129.9
|
1.0
|
S2
|
Z:SF4101
|
2.3
|
129.9
|
1.0
|
FE1
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
FE2
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
FE3
|
Z:SF4101
|
2.7
|
129.9
|
1.0
|
SG
|
Z:CYS43
|
2.9
|
125.6
|
1.0
|
CZ3
|
Z:TRP28
|
3.0
|
128.4
|
1.0
|
CB
|
Z:CYS20
|
3.1
|
134.0
|
1.0
|
CH2
|
Z:TRP28
|
3.1
|
128.4
|
1.0
|
CA
|
Z:CYS20
|
3.6
|
134.0
|
1.0
|
S4
|
Z:SF4101
|
3.9
|
129.9
|
1.0
|
N
|
Z:CYS20
|
4.2
|
134.0
|
1.0
|
CE3
|
Z:TRP28
|
4.3
|
128.4
|
1.0
|
CZ2
|
Z:TRP28
|
4.4
|
128.4
|
1.0
|
CB
|
Z:CYS43
|
4.7
|
125.6
|
1.0
|
CE1
|
F:HIS516
|
4.8
|
130.5
|
1.0
|
SG
|
Z:CYS46
|
4.8
|
131.4
|
1.0
|
SG
|
Z:CYS52
|
4.9
|
128.5
|
1.0
|
NE2
|
F:HIS516
|
4.9
|
130.5
|
1.0
|
C
|
Z:PRO19
|
5.0
|
137.0
|
1.0
|
C
|
Z:CYS20
|
5.0
|
134.0
|
1.0
|
|
Reference:
M.Lilic,
S.A.Darst,
E.A.Campbell.
Mycobacterium Tuberculosis Wt Rnap Transcription Open Promoter Complex with WHIB7 Transcription Factor To Be Published.
Page generated: Thu Aug 8 06:32:24 2024
|